FFCP PHASE1:Mm9::chr4:137772539..137772565,+: Difference between revisions
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{{FFCP|EntrezGene=15441|HGNC=|MCL_coexpression_id=321|UniProt=Q3TEA8,A2AM62,A2AM70|association_with_transcript=0bp_to_ENSMUST00000030541,ENSMUST00000097836,ENSMUST00000105825,ENSMUST00000105826,ENSMUST00000124305,ENSMUST00000137865,NM_001122896,NM_010470,uc008vkg.2,uc008vkh.2,uc008vki.2,uc008vkj.2,uc008vkk.2_5end|description=CAGE_peak_1_at_Hp1bp3_5end|id=chr4:137772539..137772565,+|ontology_enrichment_celltype=CL:0000540!6.92e-11!33;CL:0000047!6.92e-11!33;CL:0000031!6.92e-11!33;CL:0000404!6.92e-11!33;CL:0000117!6.54e-09!23;CL:0000337!6.54e-09!23;CL:0000393!1.12e-07!39;CL:0000211!1.12e-07!39|ontology_enrichment_celltype_v019_2=CL:0000540,6.92e-11,33;CL:0000047,6.92e-11,33;CL:0000031,6.92e-11,33;CL:0000404,6.92e-11,33;CL:0000117,6.54e-09,23;CL:0000337,6.54e-09,23;CL:0000393,1.12e-07,39;CL:0000211,1.12e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!5.84e-17!102;UBERON:0000924!5.84e-17!102;UBERON:0006601!5.84e-17!102;UBERON:0002346!1.47e-15!71;UBERON:0003075!1.47e-15!71;UBERON:0007284!1.47e-15!71;UBERON:0000033!6.51e-15!63;UBERON:0003056!5.76e-14!49;UBERON:0001017!6.80e-14!73;UBERON:0005743!6.80e-14!73;UBERON:0000073!1.62e-13!75;UBERON:0001016!1.62e-13!75;UBERON:0000955!9.62e-12!50;UBERON:0006238!9.62e-12!50;UBERON:0002616!2.70e-11!49;UBERON:0001049!4.16e-11!52;UBERON:0005068!4.16e-11!52;UBERON:0006241!4.16e-11!52;UBERON:0007135!4.16e-11!52;UBERON:0003080!7.21e-11!40;UBERON:0000153!2.09e-10!94;UBERON:0002780!2.14e-10!39;UBERON:0001890!2.14e-10!39;UBERON:0006240!2.14e-10!39;UBERON:0007811!3.85e-09!86;UBERON:0002791!3.43e-08!29;UBERON:0003528!3.43e-08!29;UBERON:0001893!3.43e-08!29;UBERON:0002020!4.65e-08!34|ontology_enrichment_uberon_v019_2=UBERON:0004121,5.45e-16,95;UBERON:0000924,5.45e-16,95;UBERON:0006601,5.45e-16,95;UBERON:0002346,7.80e-15,64;UBERON:0003075,7.80e-15,64;UBERON:0007284,7.80e-15,64;UBERON:0010371,4.17e-14,73;UBERON:0003056,5.76e-14,49;UBERON:0001017,6.80e-14,73;UBERON:0010314,1.15e-13,92;UBERON:0001016,1.62e-13,75;UBERON:0000073,2.73e-11,54;UBERON:0000955,3.52e-11,47;UBERON:0006238,3.52e-11,47;UBERON:0001049,4.16e-11,52;UBERON:0005068,4.16e-11,52;UBERON:0006241,4.16e-11,52;UBERON:0007135,4.16e-11,52;UBERON:0003080,7.21e-11,40;UBERON:0002616,9.80e-11,46;UBERON:0002780,2.14e-10,39;UBERON:0001890,2.14e-10,39;UBERON:0006240,2.14e-10,39;UBERON:0003528,3.43e-08,29;UBERON:0002791,3.43e-08,29;UBERON:0001893,3.43e-08,29;UBERON:0002020,4.65e-08,34|phase1_expression=81.9962097176545,31.0588112799031,35.9449399117733,52.3263085560816,41.5743455855468,33.7437336542898,32.004931761587,53.327932581371,18.7249000461717,18.9592266320815,6.33506482434368,2.39316476986009,54.2706313881922,38.4649770643589,30.3129883252253,33.8133696541009,53.1667027377391,42.429661240683,46.3446785587397,39.8926272690148,45.4131169406713,80.2270885703153,85.4123310484319,37.5982193564506,25.9232487605902,31.0085260622111,38.7685796543167,33.6135122989987,45.6056206695297,59.2270804935837,26.8293917892919,5.08024538767705,4.92051830067656,0,42.4611881034374,36.9040912695853,42.058887390048,93.3325536543304,60.9441568728564,72.2462766683842,81.764176836311,98.3585498340162,79.138187544078,60.0527821743504,54.9462967209769,42.9499400058335,32.8604364626176,40.552679086763,55.3609180490869,48.8019046676451,52.6348945311363,48.8758718840903,32.8853907873163,54.4021606508508,65.8743846319229,41.4187692017875,59.5989555072614,50.0201929509119,142.026155523438,140.182609507089,115.357315438125,38.6282766558811,40.0182658250013,28.7967909530048,31.6437236021432,34.8135256323589,42.5432156936135,36.8849573108692,116.650813847037,126.365558278462,131.663425805965,63.1288675532406,66.7022993673873,139.762001904263,153.831980984269,135.125161631673,74.8787990795843,75.9739661606867,84.1763802244214,129.907993414241,127.259312250952,129.707429268633,71.1916647453521,77.6612401843718,82.8166502950311,65.1129173896806,64.9214864443909,96.5549129375057,35.2126798999306,83.8088601584251,73.0458511528228,47.3233132339763,31.9586526842643,44.7953649059388,39.6363614643078,64.9638986291137,41.290659518735,41.7554290316241,39.7472587042389,33.213920003972,66.3372507148165,55.1803852881567,96.8259910885254,49.7746692207332,44.8136454893213,48.1383744402687,41.4530044912122,38.4799674653232,54.1180176822589,98.268696060914,60.3728937146153,68.5047326202318,64.8029547289524,65.7150712809434,90.6608932016284,81.8089509556187,70.9449557397653,63.3345183309213,55.7304647728421,61.1478692801207,49.0268170982074,50.4270263260631,57.7814459776179,98.9599093899029,98.6493989091373,54.6678098146386,74.5250074426824,50.3918294034462,57.3086724099522,97.0643343343251,83.26510971299,105.047038366355,86.9121600961382,78.5046454004115,84.3619460911814,77.2268412202526,105.607420312778,62.9499271287071,63.1806896084187,84.3871842104761,80.804795079839,71.2696523743766,82.2883933210446,80.7777823599433,116.002231053014,111.458936647819,98.7616176859542,85.1134089731362,96.1433248480476,90.2036002400498,9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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:15441 | |||
|HGNC= | |||
|MCL_coexpression_id=321 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q3TEA8,uniprot:A2AM62,uniprot:A2AM70 | |||
|association_with_transcript=0bp_to_ENSMUST00000030541,ENSMUST00000097836,ENSMUST00000105825,ENSMUST00000105826,ENSMUST00000124305,ENSMUST00000137865,NM_001122896,NM_010470,uc008vkg.2,uc008vkh.2,uc008vki.2,uc008vkj.2,uc008vkk.2_5end | |||
|cluster_id=chr4:137772539..137772565,+ | |||
|description=CAGE_peak_1_at_Hp1bp3_5end | |||
|id=chr4:137772539..137772565,+ | |||
|ontology_enrichment_celltype=CL:0000540!6.92e-11!33;CL:0000047!6.92e-11!33;CL:0000031!6.92e-11!33;CL:0000404!6.92e-11!33;CL:0000117!6.54e-09!23;CL:0000337!6.54e-09!23;CL:0000393!1.12e-07!39;CL:0000211!1.12e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,6.92e-11,33;CL:0000047,6.92e-11,33;CL:0000031,6.92e-11,33;CL:0000404,6.92e-11,33;CL:0000117,6.54e-09,23;CL:0000337,6.54e-09,23;CL:0000393,1.12e-07,39;CL:0000211,1.12e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!5.84e-17!102;UBERON:0000924!5.84e-17!102;UBERON:0006601!5.84e-17!102;UBERON:0002346!1.47e-15!71;UBERON:0003075!1.47e-15!71;UBERON:0007284!1.47e-15!71;UBERON:0000033!6.51e-15!63;UBERON:0003056!5.76e-14!49;UBERON:0001017!6.80e-14!73;UBERON:0005743!6.80e-14!73;UBERON:0000073!1.62e-13!75;UBERON:0001016!1.62e-13!75;UBERON:0000955!9.62e-12!50;UBERON:0006238!9.62e-12!50;UBERON:0002616!2.70e-11!49;UBERON:0001049!4.16e-11!52;UBERON:0005068!4.16e-11!52;UBERON:0006241!4.16e-11!52;UBERON:0007135!4.16e-11!52;UBERON:0003080!7.21e-11!40;UBERON:0000153!2.09e-10!94;UBERON:0002780!2.14e-10!39;UBERON:0001890!2.14e-10!39;UBERON:0006240!2.14e-10!39;UBERON:0007811!3.85e-09!86;UBERON:0002791!3.43e-08!29;UBERON:0003528!3.43e-08!29;UBERON:0001893!3.43e-08!29;UBERON:0002020!4.65e-08!34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,5.45e-16,95;UBERON:0000924,5.45e-16,95;UBERON:0006601,5.45e-16,95;UBERON:0002346,7.80e-15,64;UBERON:0003075,7.80e-15,64;UBERON:0007284,7.80e-15,64;UBERON:0010371,4.17e-14,73;UBERON:0003056,5.76e-14,49;UBERON:0001017,6.80e-14,73;UBERON:0010314,1.15e-13,92;UBERON:0001016,1.62e-13,75;UBERON:0000073,2.73e-11,54;UBERON:0000955,3.52e-11,47;UBERON:0006238,3.52e-11,47;UBERON:0001049,4.16e-11,52;UBERON:0005068,4.16e-11,52;UBERON:0006241,4.16e-11,52;UBERON:0007135,4.16e-11,52;UBERON:0003080,7.21e-11,40;UBERON:0002616,9.80e-11,46;UBERON:0002780,2.14e-10,39;UBERON:0001890,2.14e-10,39;UBERON:0006240,2.14e-10,39;UBERON:0003528,3.43e-08,29;UBERON:0002791,3.43e-08,29;UBERON:0001893,3.43e-08,29;UBERON:0002020,4.65e-08,34 | |||
|phase1_expression=81.9962097176545,31.0588112799031,35.9449399117733,52.3263085560816,41.5743455855468,33.7437336542898,32.004931761587,53.327932581371,18.7249000461717,18.9592266320815,6.33506482434368,2.39316476986009,54.2706313881922,38.4649770643589,30.3129883252253,33.8133696541009,53.1667027377391,42.429661240683,46.3446785587397,39.8926272690148,45.4131169406713,80.2270885703153,85.4123310484319,37.5982193564506,25.9232487605902,31.0085260622111,38.7685796543167,33.6135122989987,45.6056206695297,59.2270804935837,26.8293917892919,5.08024538767705,4.92051830067656,0,42.4611881034374,36.9040912695853,42.058887390048,93.3325536543304,60.9441568728564,72.2462766683842,81.764176836311,98.3585498340162,79.138187544078,60.0527821743504,54.9462967209769,42.9499400058335,32.8604364626176,40.552679086763,55.3609180490869,48.8019046676451,52.6348945311363,48.8758718840903,32.8853907873163,54.4021606508508,65.8743846319229,41.4187692017875,59.5989555072614,50.0201929509119,142.026155523438,140.182609507089,115.357315438125,38.6282766558811,40.0182658250013,28.7967909530048,31.6437236021432,34.8135256323589,42.5432156936135,36.8849573108692,116.650813847037,126.365558278462,131.663425805965,63.1288675532406,66.7022993673873,139.762001904263,153.831980984269,135.125161631673,74.8787990795843,75.9739661606867,84.1763802244214,129.907993414241,127.259312250952,129.707429268633,71.1916647453521,77.6612401843718,82.8166502950311,65.1129173896806,64.9214864443909,96.5549129375057,35.2126798999306,83.8088601584251,73.0458511528228,47.3233132339763,31.9586526842643,44.7953649059388,39.6363614643078,64.9638986291137,41.290659518735,41.7554290316241,39.7472587042389,33.213920003972,66.3372507148165,55.1803852881567,96.8259910885254,49.7746692207332,44.8136454893213,48.1383744402687,41.4530044912122,38.4799674653232,54.1180176822589,98.268696060914,60.3728937146153,68.5047326202318,64.8029547289524,65.7150712809434,90.6608932016284,81.8089509556187,70.9449557397653,63.3345183309213,55.7304647728421,61.1478692801207,49.0268170982074,50.4270263260631,57.7814459776179,98.9599093899029,98.6493989091373,54.6678098146386,74.5250074426824,50.3918294034462,57.3086724099522,97.0643343343251,83.26510971299,105.047038366355,86.9121600961382,78.5046454004115,84.3619460911814,77.2268412202526,105.607420312778,62.9499271287071,63.1806896084187,84.3871842104761,80.804795079839,71.2696523743766,82.2883933210446,80.7777823599433,116.002231053014,111.458936647819,98.7616176859542,85.1134089731362,96.1433248480476,90.2036002400498,93.7819491793847,84.8287484494715,83.1361275184538,60.595876974857,66.8791943325816,82.4001864628562,49.8571362992397,51.9842772371725,55.6960458815362,56.131084357121,64.4946664948015,62.8416594498942,62.2638654589103,72.2124730512972,72.0427417184057,61.6214953588581,63.3125227303101,85.7057612975024,65.0011407158248,68.4578325209827,72.6376533530867,64.3279944671462,64.5477338955689,80.6580576749834,81.5925000428814,103.419135441181,55.5103555412781,25.6517049663638,77.8502114453604,80.3538884637117,62.2429838185711,63.9336773055996,58.7078035750458,50.7902421720533,52.6727258314408,63.2443986140202,79.4219259808852,80.7763276487072,81.105060241554,45.8397898413653,59.2218256656662,70.6951520053004,80.4191900041066,76.5465034485183,71.0058734740407,70.667010762324,78.5507573028884,104.291964176904,82.081025187286,80.7427509448424,55.7345483836881,66.7578656816941,60.4763359257784,26.8620620202911,29.090731276754,24.9596944747188,36.717681971319,29.4236134897949,34.1198641387103,45.1682935797773,61.9356566280635,36.2421065408268,54.6319184803947,69.5903572140101,58.0390071993083,63.9024561206193,49.8724809590916,48.7267956577001,89.4205440406367,68.406399649145,71.3786596816073,74.857582826858,74.6314989557437,74.8752970764916,87.6000598460531,109.469976448225,108.925884577378,111.618203582983,97.1079541124096,86.1921035404782,67.6925128914311,100.531095714151,42.2215595029962,42.9685490216781,33.4399705652945,57.3948432313844,87.0184197733832,77.1252897776697,48.0329389953659,49.7367726592615,75.0909562210691,70.6694127176916,96.2942587865611,75.5141401530064,80.8759186919091,101.624474553191,78.9380868266044,73.6484761936506,83.0104333687699,95.7537522936985,95.3837372599565,87.2521457969551,107.179619254653,74.0715852146684,38.4960901185892,57.0534494964206,53.2089460257962,47.3398750187304,46.6576990751621,45.1929667477573,67.1913562237375,76.7056169197537,64.8825228660193,53.0941753332171,55.8718625447493,54.661837921539,85.109901438447,87.5096916992168,89.3868504938834,84.663128837479,73.0641762606167,70.2773141352158,68.7814906116866,85.859115650317,48.1077001530606,42.366414172764,59.1016106787298,79.9698326766178,112.540705407046,56.513210657682,67.8034913937815,63.3583873015936,71.4128049743134,87.7061678509711,40.4963987490911,62.12244725693,51.2988840814101,47.0921142511728,34.3102511579773,35.003060500598,92.1283090566696,100.205239863739,92.7321824227684,45.8241896647254,80.9820143567706,72.788369231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| |||
|short_description=p1@Hp1bp3 | |||
}} |
Revision as of 00:49, 5 August 2015
Short description: | p1@Hp1bp3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Hp1bp3_5end |
Coexpression cluster: | MCL_coexpression_mm9:321 |
Association with transcript: | 0bp_to_ENSMUST00000030541, ENSMUST00000097836, ENSMUST00000105825, ENSMUST00000105826, ENSMUST00000124305, ENSMUST00000137865, NM_001122896, NM_010470, uc008vkg.2, uc008vkh.2, uc008vki.2, uc008vkj.2, uc008vkk.2_5end |
EntrezGene: | 15441 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 6.92e-11 | 33 |
neuronal stem cell | 6.92e-11 | 33 |
neuroblast | 6.92e-11 | 33 |
electrically signaling cell | 6.92e-11 | 33 |
CNS neuron (sensu Vertebrata) | 6.54e-09 | 23 |
neuroblast (sensu Vertebrata) | 6.54e-09 | 23 |
electrically responsive cell | 1.12e-07 | 39 |
electrically active cell | 1.12e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 5.45e-16 | 95 |
ectoderm | 5.45e-16 | 95 |
presumptive ectoderm | 5.45e-16 | 95 |
neurectoderm | 7.80e-15 | 64 |
neural plate | 7.80e-15 | 64 |
presumptive neural plate | 7.80e-15 | 64 |
ecto-epithelium | 4.17e-14 | 73 |
pre-chordal neural plate | 5.76e-14 | 49 |
central nervous system | 6.80e-14 | 73 |
structure with developmental contribution from neural crest | 1.15e-13 | 92 |
nervous system | 1.62e-13 | 75 |
regional part of nervous system | 2.73e-11 | 54 |
brain | 3.52e-11 | 47 |
future brain | 3.52e-11 | 47 |
neural tube | 4.16e-11 | 52 |
neural rod | 4.16e-11 | 52 |
future spinal cord | 4.16e-11 | 52 |
neural keel | 4.16e-11 | 52 |
anterior neural tube | 7.21e-11 | 40 |
regional part of brain | 9.80e-11 | 46 |
regional part of forebrain | 2.14e-10 | 39 |
forebrain | 2.14e-10 | 39 |
future forebrain | 2.14e-10 | 39 |
brain grey matter | 3.43e-08 | 29 |
regional part of telencephalon | 3.43e-08 | 29 |
telencephalon | 3.43e-08 | 29 |
gray matter | 4.65e-08 | 34 |