FFCP PHASE1:Mm9::chr11:101329514..101329549,+: Difference between revisions
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{{FFCP|EntrezGene=11858|HGNC=|UniProt=Q9QYM5|association_with_transcript=25bp_to_ENSMUST00000001347_5end|description=CAGE_peak_1_at_Rnd2_5end|id=chr11:101329514..101329549,+|ontology_enrichment_celltype=CL:0000221!5.02e-17!44;CL:0000133!5.02e-17!44;CL:0000540!1.50e-16!33;CL:0000047!1.50e-16!33;CL:0000031!1.50e-16!33;CL:0000404!1.50e-16!33;CL:0002319!2.55e-16!43;CL:0000055!3.64e-13!50;CL:0000393!1.11e-12!39;CL:0000211!1.11e-12!39;CL:0000117!1.36e-11!23;CL:0000337!1.36e-11!23;CL:0002321!2.15e-07!70;CL:0000220!2.15e-07!70|ontology_enrichment_celltype_v019_2=CL:0000221,4.08e-17,44;CL:0000133,4.08e-17,44;CL:0000540,9.91e-17,33;CL:0000047,9.91e-17,33;CL:0000031,9.91e-17,33;CL:0000404,9.91e-17,33;CL:0002319,2.11e-16,43;CL:0000393,8.20e-13,39;CL:0000211,8.20e-13,39;CL:0000117,1.03e-11,23;CL:0000337,1.03e-11,23;CL:0002321,2.97e-07,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!4.95e-29!73;UBERON:0005743!4.95e-29!73;UBERON:0000073!1.41e-27!75;UBERON:0001016!1.41e-27!75;UBERON:0004121!2.29e-25!102;UBERON:0000924!2.29e-25!102;UBERON:0006601!2.29e-25!102;UBERON:0002346!3.25e-20!71;UBERON:0003075!3.25e-20!71;UBERON:0007284!3.25e-20!71;UBERON:0000033!1.34e-19!63;UBERON:0001049!1.71e-18!52;UBERON:0005068!1.71e-18!52;UBERON:0006241!1.71e-18!52;UBERON:0007135!1.71e-18!52;UBERON:0000955!2.55e-17!50;UBERON:0006238!2.55e-17!50;UBERON:0002616!6.58e-17!49;UBERON:0003056!8.70e-15!49;UBERON:0002020!4.76e-13!34;UBERON:0003080!2.14e-12!40;UBERON:0002780!8.16e-12!39;UBERON:0001890!8.16e-12!39;UBERON:0006240!8.16e-12!39;UBERON:0002791!1.37e-10!29;UBERON:0003528!1.37e-10!29;UBERON:0001893!1.37e-10!29;UBERON:0000956!1.15e-07!21;UBERON:0001869!1.15e-07!21;UBERON:0000203!1.15e-07!21;UBERON:0003076!3.80e-07!12;UBERON:0003057!3.80e-07!12|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.32e-29,73;UBERON:0004121,7.42e-28,95;UBERON:0000924,7.42e-28,95;UBERON:0006601,7.42e-28,95;UBERON:0001016,8.65e-28,75;UBERON:0002346,2.21e-23,64;UBERON:0003075,2.21e-23,64;UBERON:0007284,2.21e-23,64;UBERON:0010371,5.26e-22,73;UBERON:0000073,8.78e-20,54;UBERON:0001049,1.07e-18,52;UBERON:0005068,1.07e-18,52;UBERON:0006241,1.07e-18,52;UBERON:0007135,1.07e-18,52;UBERON:0010314,6.22e-16,92;UBERON:0000955,8.59e-16,47;UBERON:0006238,8.59e-16,47;UBERON:0002616,2.19e-15,46;UBERON:0003056,6.05e-15,49;UBERON:0002020,3.47e-13,34;UBERON:0003080,1.59e-12,40;UBERON:0002780,6.16e-12,39;UBERON:0001890,6.16e-12,39;UBERON:0006240,6.16e-12,39;UBERON:0003528,1.07e-10,29;UBERON:0002791,1.07e-10,29;UBERON:0001893,1.07e-10,29;UBERON:0000956,9.73e-08,21;UBERON:0001869,9.73e-08,21;UBERON:0000203,9.73e-08,21;UBERON:0003076,3.26e-07,12;UBERON:0003057,3.26e-07,12|phase1_expression=24.6629224541383,5.93258192986914,7.27998783023258,19.9626379462508,13.023288978605,0.503637815735669,0.934450562382103,0,0,0,0,0,0,0,0,0,0,0,0,0,8.58937230525805,0.198581902401771,0,2.07990149631429,2.52350209173887,3.44539178469012,5.59990595006797,2.80112602491656,4.3705386474966,4.03248207615889,0.886922042621219,37.4668097341182,31.9833689543976,15.8481681015439,0.288851619751275,0.166234645358492,0.204169356262369,0,0,0,0,0,0,1.38486499773135,1.52065396829272,1.83546752161682,29.7308710852255,9.15705656797875,4.39372365468944,3.30530828426282,6.85933465964276,7.18762821824858,0.167782606057736,0,0,2.57259436035947,2.0057340795713,1.03134418455488,20.636279007679,15.869729378161,17.747279298173,3.38844532069132,7.11435836888911,0.449949858640699,0,1.4209602298922,16.4780060785123,28.0479362884735,69.5757298589885,58.4575712976221,79.5028353908224,74.5549069293927,58.9719004340808,15.5563315002992,20.5109307979026,11.0306254393203,29.731287869835,35.2417053115118,32.8717981168361,10.8146755938759,10.9785172322892,9.37644067002168,55.2782338022734,28.7008931116157,31.9348337853533,24.1595440088408,21.0710087582672,13.047961207771,0.530083353332288,2.34271836331035,0.289864488701678,5.16254326188832,3.39985666853875,2.69851595818909,4.54843492213368,3.13618820968135,3.37066608316204,1.53387290320252,1.55871602761721,1.41335829804136,89.1538847186388,0,2.54805239706646,0,0.865964164044856,0.506719730950197,0.505524445014783,3.65388415100992,0,1.03909497345377,5.03107447621794,1.21786191324856,3.22861696158482,2.26083960828934,2.11659672844269,1.88499886994513,10.6293836125781,0.86759614151947,0,0.647067399789637,0.662524555381181,1.45462575940567,0,14.9318206475889,27.8564120061895,3.83185582812887,0,1.19980546198682,0.127070227073065,43.1397041485889,28.8225379775735,9.80103946480342,18.251553620189,32.7315785382823,36.362907797923,42.0204871345492,1.52759045775474,0.373220911830279,1.76905930903572,3.36706969418358,4.42409506073193,17.012755728077,13.8647839950119,17.4817588689429,16.9410882886806,27.8006773018124,35.9814622309359,6.46758426847539,1.29340795759705,0.945530400839096,2.28736461413134,2.41115305670332,2.50242524303038,1.39300866608867,1.85203922767149,12.7381930763836,0,0.257347907114715,0,14.9130556225561,9.61556845922494,6.842358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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:11858 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q9QYM5 | |||
|association_with_transcript=25bp_to_ENSMUST00000001347_5end | |||
|cluster_id=chr11:101329514..101329549,+ | |||
|description=CAGE_peak_1_at_Rnd2_5end | |||
|id=chr11:101329514..101329549,+ | |||
|ontology_enrichment_celltype=CL:0000221!5.02e-17!44;CL:0000133!5.02e-17!44;CL:0000540!1.50e-16!33;CL:0000047!1.50e-16!33;CL:0000031!1.50e-16!33;CL:0000404!1.50e-16!33;CL:0002319!2.55e-16!43;CL:0000055!3.64e-13!50;CL:0000393!1.11e-12!39;CL:0000211!1.11e-12!39;CL:0000117!1.36e-11!23;CL:0000337!1.36e-11!23;CL:0002321!2.15e-07!70;CL:0000220!2.15e-07!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,4.08e-17,44;CL:0000133,4.08e-17,44;CL:0000540,9.91e-17,33;CL:0000047,9.91e-17,33;CL:0000031,9.91e-17,33;CL:0000404,9.91e-17,33;CL:0002319,2.11e-16,43;CL:0000393,8.20e-13,39;CL:0000211,8.20e-13,39;CL:0000117,1.03e-11,23;CL:0000337,1.03e-11,23;CL:0002321,2.97e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!4.95e-29!73;UBERON:0005743!4.95e-29!73;UBERON:0000073!1.41e-27!75;UBERON:0001016!1.41e-27!75;UBERON:0004121!2.29e-25!102;UBERON:0000924!2.29e-25!102;UBERON:0006601!2.29e-25!102;UBERON:0002346!3.25e-20!71;UBERON:0003075!3.25e-20!71;UBERON:0007284!3.25e-20!71;UBERON:0000033!1.34e-19!63;UBERON:0001049!1.71e-18!52;UBERON:0005068!1.71e-18!52;UBERON:0006241!1.71e-18!52;UBERON:0007135!1.71e-18!52;UBERON:0000955!2.55e-17!50;UBERON:0006238!2.55e-17!50;UBERON:0002616!6.58e-17!49;UBERON:0003056!8.70e-15!49;UBERON:0002020!4.76e-13!34;UBERON:0003080!2.14e-12!40;UBERON:0002780!8.16e-12!39;UBERON:0001890!8.16e-12!39;UBERON:0006240!8.16e-12!39;UBERON:0002791!1.37e-10!29;UBERON:0003528!1.37e-10!29;UBERON:0001893!1.37e-10!29;UBERON:0000956!1.15e-07!21;UBERON:0001869!1.15e-07!21;UBERON:0000203!1.15e-07!21;UBERON:0003076!3.80e-07!12;UBERON:0003057!3.80e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.32e-29,73;UBERON:0004121,7.42e-28,95;UBERON:0000924,7.42e-28,95;UBERON:0006601,7.42e-28,95;UBERON:0001016,8.65e-28,75;UBERON:0002346,2.21e-23,64;UBERON:0003075,2.21e-23,64;UBERON:0007284,2.21e-23,64;UBERON:0010371,5.26e-22,73;UBERON:0000073,8.78e-20,54;UBERON:0001049,1.07e-18,52;UBERON:0005068,1.07e-18,52;UBERON:0006241,1.07e-18,52;UBERON:0007135,1.07e-18,52;UBERON:0010314,6.22e-16,92;UBERON:0000955,8.59e-16,47;UBERON:0006238,8.59e-16,47;UBERON:0002616,2.19e-15,46;UBERON:0003056,6.05e-15,49;UBERON:0002020,3.47e-13,34;UBERON:0003080,1.59e-12,40;UBERON:0002780,6.16e-12,39;UBERON:0001890,6.16e-12,39;UBERON:0006240,6.16e-12,39;UBERON:0003528,1.07e-10,29;UBERON:0002791,1.07e-10,29;UBERON:0001893,1.07e-10,29;UBERON:0000956,9.73e-08,21;UBERON:0001869,9.73e-08,21;UBERON:0000203,9.73e-08,21;UBERON:0003076,3.26e-07,12;UBERON:0003057,3.26e-07,12 | |||
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| |||
|short_description=p1@Rnd2 | |||
}} |
Revision as of 04:36, 5 August 2015
Short description: | p1@Rnd2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Rnd2_5end |
Coexpression cluster: | NA |
Association with transcript: | 25bp_to_ENSMUST00000001347_5end |
EntrezGene: | 11858 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 4.08e-17 | 44 |
neurectodermal cell | 4.08e-17 | 44 |
neuron | 9.91e-17 | 33 |
neuronal stem cell | 9.91e-17 | 33 |
neuroblast | 9.91e-17 | 33 |
electrically signaling cell | 9.91e-17 | 33 |
neural cell | 2.11e-16 | 43 |
electrically responsive cell | 8.20e-13 | 39 |
electrically active cell | 8.20e-13 | 39 |
CNS neuron (sensu Vertebrata) | 1.03e-11 | 23 |
neuroblast (sensu Vertebrata) | 1.03e-11 | 23 |
embryonic cell | 2.97e-07 | 70 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.32e-29 | 73 |
ectoderm-derived structure | 7.42e-28 | 95 |
ectoderm | 7.42e-28 | 95 |
presumptive ectoderm | 7.42e-28 | 95 |
nervous system | 8.65e-28 | 75 |
neurectoderm | 2.21e-23 | 64 |
neural plate | 2.21e-23 | 64 |
presumptive neural plate | 2.21e-23 | 64 |
ecto-epithelium | 5.26e-22 | 73 |
regional part of nervous system | 8.78e-20 | 54 |
neural tube | 1.07e-18 | 52 |
neural rod | 1.07e-18 | 52 |
future spinal cord | 1.07e-18 | 52 |
neural keel | 1.07e-18 | 52 |
structure with developmental contribution from neural crest | 6.22e-16 | 92 |
brain | 8.59e-16 | 47 |
future brain | 8.59e-16 | 47 |
regional part of brain | 2.19e-15 | 46 |
pre-chordal neural plate | 6.05e-15 | 49 |
gray matter | 3.47e-13 | 34 |
anterior neural tube | 1.59e-12 | 40 |
regional part of forebrain | 6.16e-12 | 39 |
forebrain | 6.16e-12 | 39 |
future forebrain | 6.16e-12 | 39 |
brain grey matter | 1.07e-10 | 29 |
regional part of telencephalon | 1.07e-10 | 29 |
telencephalon | 1.07e-10 | 29 |
cerebral cortex | 9.73e-08 | 21 |
cerebral hemisphere | 9.73e-08 | 21 |
pallium | 9.73e-08 | 21 |
posterior neural tube | 3.26e-07 | 12 |
chordal neural plate | 3.26e-07 | 12 |