FFCP PHASE1:Mm9::chr11:101329550..101329563,+: Difference between revisions
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{{FFCP|EntrezGene=11858|HGNC=|UniProt=Q9QYM5|association_with_transcript=61bp_to_ENSMUST00000001347_5end|description=CAGE_peak_2_at_Rnd2_5end|id=chr11:101329550..101329563,+|ontology_enrichment_celltype=CL:0000540!2.06e-17!33;CL:0000047!2.06e-17!33;CL:0000031!2.06e-17!33;CL:0000404!2.06e-17!33;CL:0000221!2.25e-15!44;CL:0000133!2.25e-15!44;CL:0002319!1.16e-14!43;CL:0000117!1.16e-12!23;CL:0000337!1.16e-12!23;CL:0000393!6.92e-12!39;CL:0000211!6.92e-12!39;CL:0000055!6.85e-10!50|ontology_enrichment_celltype_v019_2=CL:0000540,1.02e-23,33;CL:0000047,1.02e-23,33;CL:0000031,1.02e-23,33;CL:0000404,1.02e-23,33;CL:0000221,3.48e-20,44;CL:0000133,3.48e-20,44;CL:0002319,4.93e-19,43;CL:0000393,1.33e-18,39;CL:0000211,1.33e-18,39;CL:0000117,7.12e-17,23;CL:0000337,7.12e-17,23;CL:0002321,4.59e-09,70;CL:0000107,5.83e-07,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.70e-25!73;UBERON:0005743!2.70e-25!73;UBERON:0000073!2.13e-24!75;UBERON:0001016!2.13e-24!75;UBERON:0004121!3.33e-24!102;UBERON:0000924!3.33e-24!102;UBERON:0006601!3.33e-24!102;UBERON:0002346!6.50e-19!71;UBERON:0003075!6.50e-19!71;UBERON:0007284!6.50e-19!71;UBERON:0001049!3.02e-17!52;UBERON:0005068!3.02e-17!52;UBERON:0006241!3.02e-17!52;UBERON:0007135!3.02e-17!52;UBERON:0000033!5.82e-16!63;UBERON:0002616!3.84e-15!49;UBERON:0000955!2.17e-14!50;UBERON:0006238!2.17e-14!50;UBERON:0003056!7.89e-14!49;UBERON:0002020!6.61e-13!34;UBERON:0003080!3.32e-12!40;UBERON:0002780!1.03e-11!39;UBERON:0001890!1.03e-11!39;UBERON:0006240!1.03e-11!39;UBERON:0002791!3.97e-10!29;UBERON:0003528!3.97e-10!29;UBERON:0001893!3.97e-10!29;UBERON:0007811!2.80e-07!86|ontology_enrichment_uberon_v019_2=UBERON:0004121,9.56e-29,95;UBERON:0000924,9.56e-29,95;UBERON:0006601,9.56e-29,95;UBERON:0001017,4.43e-28,73;UBERON:0001016,6.44e-27,75;UBERON:0010371,1.13e-21,73;UBERON:0002346,3.88e-21,64;UBERON:0003075,3.88e-21,64;UBERON:0007284,3.88e-21,64;UBERON:0000073,1.38e-17,54;UBERON:0001049,2.40e-16,52;UBERON:0005068,2.40e-16,52;UBERON:0006241,2.40e-16,52;UBERON:0007135,2.40e-16,52;UBERON:0010314,1.99e-14,92;UBERON:0002020,5.69e-14,34;UBERON:0002616,3.09e-12,46;UBERON:0000955,8.42e-12,47;UBERON:0006238,8.42e-12,47;UBERON:0003056,9.87e-12,49;UBERON:0003528,9.75e-11,29;UBERON:0002791,9.75e-11,29;UBERON:0001893,9.75e-11,29;UBERON:0003080,4.58e-10,40;UBERON:0002780,2.16e-09,39;UBERON:0001890,2.16e-09,39;UBERON:0006240,2.16e-09,39;UBERON:0003076,9.14e-08,12;UBERON:0003057,9.14e-08,12;UBERON:0002410,5.83e-07,9|phase1_expression=2.7225304007815,0,0,0.60492842261366,0.500895729946347,0,0.233612640595526,0,0,0.234064526321993,0,0,0,0,0,0,0,0,0,0,0.850432901510698,0,0,0.159992422793407,0.22940928106717,0,0.430761996159075,0,0,0,0,3.81018404075779,2.46025915033828,0,0,0.166234645358492,0,0,0,0,0,0,0,0,0,0,0,0.436050312760893,0.439372365468944,0,0.55994568650145,0,0.167782606057736,0,0,0,0,0,3.84401275633236,1.5869729378161,1.26766280701236,0.677689064138264,0,0,0,0,2.39680088414724,4.2264013585371,10.9910989046986,6.07526722492608,9.88527318351495,14.2825492201902,10.3808214247258,2.44981598429908,1.53352753629178,0.919218786610021,1.10115880999389,3.70293280447044,2.91852413186863,1.84640802822271,1.37231465403614,0.52091337055676,6.14202597803038,3.93933827022176,3.20876320331301,2.65165726926301,4.41352210477219,0.931997229126503,0,0.302286240427142,0,0,0,0,0,0,0.140444420131752,0.340860645156116,0,0,10.7040999030277,0,0,0,0,0.760079596425296,0,0.22836775943812,0,0.29688427812965,0.520455980298408,0,0.230615497256059,0.150722640552623,0,0.125666591329675,2.22475470960936,0,0,0,0,0,0,1.75668478206928,2.93225389538837,0,0,0,0,2.54644086988199,2.74500361691176,1.38219787324151,1.56441888173049,3.58001640262463,2.49345653471472,3.89379031362618,0.101839363850316,0,0,0.210441855886474,0.390361328888111,1.37941262660084,0.540186389416048,1.9591626318643,1.76894897793452,3.58718416797579,4.31027932974753,0,0.215567992932842,0.189106080167819,0.527853372491847,0.219195732427575,0,0,0,1.59227413454795,0,0,0,1.44988040774851,0.469052119962192,1.08037236876609,0.473489471170421,0,0,0,0,0,0,0,0.0810688095458557,0.146199987425332,0,0,1.05144974282064,2.05809224758569,0.660837565967596,0.264450566663544,0.639864751605702,0,0.38660238396628,0.201683524623343,0.444756087689741,0.760902504450237,0,0.823494773620054,1.00534083520108,0.198956472041151,0.974820435595601,0,0.216138049874694,0.199141273254367,0,0.114248512609729,0,0,0,0.0701358198903186,0,0.147610147979602,0,0,0.592905254174298,0,0,0,0,0.241177159752417,0.25462585178142,0,0,0,0,0,0,0.505157755894224,0.358794827043824,0.482443521363367,0,0.189491411770485,0.325929952884052,0,0,0,0,0.195133647857799,0.157635144106191,0,0,0,0,0,0,0,0,0,3.85321415970701,7.61875962849321,0,0,5.67914794949262,4.29482618726302,6.89354872744957,1.19484398976276,2.22798674082394,1.13230612315533,2.42886421004937,0.876767573733936,1.18586333383957,0,0.709700426041343,0.890328018336276,0.162886959353576,0,0,0,0.302323556964751,0.377210159511796,1.18120757152309,1.22974059177571,0.258428293168221,0.363533729477506,1.06949213515416,0.316036757935816,0,0,0.680879211507576,0.540183282093931,0.258717367565509,0.428674070063185,1.06404140185364,0.178368817602071,0.493647061806363,0.913394847343798,6.10146440965647,4.44847348814022,0,0.98931751764888,0.161464426695906,0.542816324353403,1.07435109602823,1.14898629821543,0.874442509889552,6.30446026835733,0,0.206386867963223,0,0,0,0,0,0,0,0,0.316335993581135,0.406638934253697,0,0.627264888043406,0.655087691238533,0.269728692769641,0.247960367176008,0,0.129614973291793,0,2.25477175473676,3.58839710505549,3.30916980914195,1.55560950675238,3.87479470433193,3.71703476079712,2.58185925020659,5.33837977860195,4.50895181030557,0.966336483304024,0.576060012515731,0,0.202725215290164,0.102710957164827,0.389762468933385,0,0.198681354781265,0.120195449519969,0,0,0,0,0,0,0,0,1.10992976687032,0.179427713218951,2.3503846290971,0,0,0,0,0,0.564751842617067,0.920650473014354,2.86447756719698,3.26521046453006,1.37016503954128,0,0.675022500231806,1.80128481289688,0.906284817968409,2.07104124700728,2.49089634202024,0.798049746802062,0.341467211508268,0.729320151204882,0.628839487883947,0.183843508450014,0,0.412070114477788,0.320919209591815,0.252697211763798,0.25347929989024,0.377252682772152,0.280924522409647,0.128050304809739,0.459483751644906,0,0.463537303779422,0.38581844092741,0,0.735994600671987,0.342869252385415,0.177475806159338,0.238436189947321,0.290692833264657,0.188218760830661,0.507687647350059,0,0.263069711437843,0.135804113845862,1.12228454331548,0.355905054372522,0.394017929502254,0.409231043169689,0.619747364743864,0.385813221962283,0.499621155875892,0.233931608445408,0.429742108096597,0.191288332068843,0.882365676478062,0|short_description=p2@Rnd2}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:11858 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q9QYM5 | |||
|association_with_transcript=61bp_to_ENSMUST00000001347_5end | |||
|cluster_id=chr11:101329550..101329563,+ | |||
|description=CAGE_peak_2_at_Rnd2_5end | |||
|id=chr11:101329550..101329563,+ | |||
|ontology_enrichment_celltype=CL:0000540!2.06e-17!33;CL:0000047!2.06e-17!33;CL:0000031!2.06e-17!33;CL:0000404!2.06e-17!33;CL:0000221!2.25e-15!44;CL:0000133!2.25e-15!44;CL:0002319!1.16e-14!43;CL:0000117!1.16e-12!23;CL:0000337!1.16e-12!23;CL:0000393!6.92e-12!39;CL:0000211!6.92e-12!39;CL:0000055!6.85e-10!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.02e-23,33;CL:0000047,1.02e-23,33;CL:0000031,1.02e-23,33;CL:0000404,1.02e-23,33;CL:0000221,3.48e-20,44;CL:0000133,3.48e-20,44;CL:0002319,4.93e-19,43;CL:0000393,1.33e-18,39;CL:0000211,1.33e-18,39;CL:0000117,7.12e-17,23;CL:0000337,7.12e-17,23;CL:0002321,4.59e-09,70;CL:0000107,5.83e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.70e-25!73;UBERON:0005743!2.70e-25!73;UBERON:0000073!2.13e-24!75;UBERON:0001016!2.13e-24!75;UBERON:0004121!3.33e-24!102;UBERON:0000924!3.33e-24!102;UBERON:0006601!3.33e-24!102;UBERON:0002346!6.50e-19!71;UBERON:0003075!6.50e-19!71;UBERON:0007284!6.50e-19!71;UBERON:0001049!3.02e-17!52;UBERON:0005068!3.02e-17!52;UBERON:0006241!3.02e-17!52;UBERON:0007135!3.02e-17!52;UBERON:0000033!5.82e-16!63;UBERON:0002616!3.84e-15!49;UBERON:0000955!2.17e-14!50;UBERON:0006238!2.17e-14!50;UBERON:0003056!7.89e-14!49;UBERON:0002020!6.61e-13!34;UBERON:0003080!3.32e-12!40;UBERON:0002780!1.03e-11!39;UBERON:0001890!1.03e-11!39;UBERON:0006240!1.03e-11!39;UBERON:0002791!3.97e-10!29;UBERON:0003528!3.97e-10!29;UBERON:0001893!3.97e-10!29;UBERON:0007811!2.80e-07!86 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,9.56e-29,95;UBERON:0000924,9.56e-29,95;UBERON:0006601,9.56e-29,95;UBERON:0001017,4.43e-28,73;UBERON:0001016,6.44e-27,75;UBERON:0010371,1.13e-21,73;UBERON:0002346,3.88e-21,64;UBERON:0003075,3.88e-21,64;UBERON:0007284,3.88e-21,64;UBERON:0000073,1.38e-17,54;UBERON:0001049,2.40e-16,52;UBERON:0005068,2.40e-16,52;UBERON:0006241,2.40e-16,52;UBERON:0007135,2.40e-16,52;UBERON:0010314,1.99e-14,92;UBERON:0002020,5.69e-14,34;UBERON:0002616,3.09e-12,46;UBERON:0000955,8.42e-12,47;UBERON:0006238,8.42e-12,47;UBERON:0003056,9.87e-12,49;UBERON:0003528,9.75e-11,29;UBERON:0002791,9.75e-11,29;UBERON:0001893,9.75e-11,29;UBERON:0003080,4.58e-10,40;UBERON:0002780,2.16e-09,39;UBERON:0001890,2.16e-09,39;UBERON:0006240,2.16e-09,39;UBERON:0003076,9.14e-08,12;UBERON:0003057,9.14e-08,12;UBERON:0002410,5.83e-07,9 | |||
|phase1_expression=2.7225304007815,0,0,0.60492842261366,0.500895729946347,0,0.233612640595526,0,0,0.234064526321993,0,0,0,0,0,0,0,0,0,0,0.850432901510698,0,0,0.159992422793407,0.22940928106717,0,0.430761996159075,0,0,0,0,3.81018404075779,2.46025915033828,0,0,0.166234645358492,0,0,0,0,0,0,0,0,0,0,0,0.436050312760893,0.439372365468944,0,0.55994568650145,0,0.167782606057736,0,0,0,0,0,3.84401275633236,1.5869729378161,1.26766280701236,0.677689064138264,0,0,0,0,2.39680088414724,4.2264013585371,10.9910989046986,6.07526722492608,9.88527318351495,14.2825492201902,10.3808214247258,2.44981598429908,1.53352753629178,0.919218786610021,1.10115880999389,3.70293280447044,2.91852413186863,1.84640802822271,1.37231465403614,0.52091337055676,6.14202597803038,3.93933827022176,3.20876320331301,2.65165726926301,4.41352210477219,0.931997229126503,0,0.302286240427142,0,0,0,0,0,0,0.140444420131752,0.340860645156116,0,0,10.7040999030277,0,0,0,0,0.760079596425296,0,0.22836775943812,0,0.29688427812965,0.520455980298408,0,0.230615497256059,0.150722640552623,0,0.125666591329675,2.22475470960936,0,0,0,0,0,0,1.75668478206928,2.93225389538837,0,0,0,0,2.54644086988199,2.74500361691176,1.38219787324151,1.56441888173049,3.58001640262463,2.49345653471472,3.89379031362618,0.101839363850316,0,0,0.210441855886474,0.390361328888111,1.37941262660084,0.540186389416048,1.9591626318643,1.76894897793452,3.58718416797579,4.31027932974753,0,0.215567992932842,0.189106080167819,0.527853372491847,0.219195732427575,0,0,0,1.59227413454795,0,0,0,1.44988040774851,0.469052119962192,1.08037236876609,0.473489471170421,0,0,0,0,0,0,0,0.0810688095458557,0.146199987425332,0,0,1.05144974282064,2.05809224758569,0.660837565967596,0.264450566663544,0.639864751605702,0,0.38660238396628,0.201683524623343,0.444756087689741,0.760902504450237,0,0.823494773620054,1.00534083520108,0.198956472041151,0.974820435595601,0,0.216138049874694,0.199141273254367,0,0.114248512609729,0,0,0,0.0701358198903186,0,0.147610147979602,0,0,0.592905254174298,0,0,0,0,0.241177159752417,0.25462585178142,0,0,0,0,0,0,0.505157755894224,0.358794827043824,0.482443521363367,0,0.189491411770485,0.325929952884052,0,0,0,0,0.195133647857799,0.157635144106191,0,0,0,0,0,0,0,0,0,3.85321415970701,7.61875962849321,0,0,5.67914794949262,4.29482618726302,6.89354872744957,1.19484398976276,2.22798674082394,1.13230612315533,2.42886421004937,0.876767573733936,1.18586333383957,0,0.709700426041343,0.890328018336276,0.162886959353576,0,0,0,0.302323556964751,0.377210159511796,1.18120757152309,1.22974059177571,0.258428293168221,0.363533729477506,1.06949213515416,0.316036757935816,0,0,0.680879211507576,0.540183282093931,0.258717367565509,0.428674070063185,1.06404140185364,0.178368817602071,0.493647061806363,0.913394847343798,6.10146440965647,4.44847348814022,0,0.98931751764888,0.161464426695906,0.542816324353403,1.07435109602823,1.14898629821543,0.874442509889552,6.30446026835733,0,0.206386867963223,0,0,0,0,0,0,0,0,0.316335993581135,0.406638934253697,0,0.627264888043406,0.655087691238533,0.269728692769641,0.247960367176008,0,0.129614973291793,0,2.25477175473676,3.58839710505549,3.30916980914195,1.55560950675238,3.87479470433193,3.71703476079712,2.58185925020659,5.33837977860195,4.50895181030557,0.966336483304024,0.576060012515731,0,0.202725215290164,0.102710957164827,0.389762468933385,0,0.198681354781265,0.120195449519969,0,0,0,0,0,0,0,0,1.10992976687032,0.179427713218951,2.3503846290971,0,0,0,0,0,0.564751842617067,0.920650473014354,2.86447756719698,3.26521046453006,1.37016503954128,0,0.675022500231806,1.80128481289688,0.906284817968409,2.07104124700728,2.49089634202024,0.798049746802062,0.341467211508268,0.729320151204882,0.628839487883947,0.183843508450014,0,0.412070114477788,0.320919209591815,0.252697211763798,0.25347929989024,0.377252682772152,0.280924522409647,0.128050304809739,0.459483751644906,0,0.463537303779422,0.38581844092741,0,0.735994600671987,0.342869252385415,0.177475806159338,0.238436189947321,0.290692833264657,0.188218760830661,0.507687647350059,0,0.263069711437843,0.135804113845862,1.12228454331548,0.355905054372522,0.394017929502254,0.409231043169689,0.619747364743864,0.385813221962283,0.499621155875892,0.233931608445408,0.429742108096597,0.191288332068843,0.882365676478062,0 | |||
|short_description=p2@Rnd2 | |||
}} |
Revision as of 04:37, 5 August 2015
Short description: | p2@Rnd2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Rnd2_5end |
Coexpression cluster: | NA |
Association with transcript: | 61bp_to_ENSMUST00000001347_5end |
EntrezGene: | 11858 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.02e-23 | 33 |
neuronal stem cell | 1.02e-23 | 33 |
neuroblast | 1.02e-23 | 33 |
electrically signaling cell | 1.02e-23 | 33 |
ectodermal cell | 3.48e-20 | 44 |
neurectodermal cell | 3.48e-20 | 44 |
neural cell | 4.93e-19 | 43 |
electrically responsive cell | 1.33e-18 | 39 |
electrically active cell | 1.33e-18 | 39 |
CNS neuron (sensu Vertebrata) | 7.12e-17 | 23 |
neuroblast (sensu Vertebrata) | 7.12e-17 | 23 |
embryonic cell | 4.59e-09 | 70 |
autonomic neuron | 5.83e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 9.56e-29 | 95 |
ectoderm | 9.56e-29 | 95 |
presumptive ectoderm | 9.56e-29 | 95 |
central nervous system | 4.43e-28 | 73 |
nervous system | 6.44e-27 | 75 |
ecto-epithelium | 1.13e-21 | 73 |
neurectoderm | 3.88e-21 | 64 |
neural plate | 3.88e-21 | 64 |
presumptive neural plate | 3.88e-21 | 64 |
regional part of nervous system | 1.38e-17 | 54 |
neural tube | 2.40e-16 | 52 |
neural rod | 2.40e-16 | 52 |
future spinal cord | 2.40e-16 | 52 |
neural keel | 2.40e-16 | 52 |
structure with developmental contribution from neural crest | 1.99e-14 | 92 |
gray matter | 5.69e-14 | 34 |
regional part of brain | 3.09e-12 | 46 |
brain | 8.42e-12 | 47 |
future brain | 8.42e-12 | 47 |
pre-chordal neural plate | 9.87e-12 | 49 |
brain grey matter | 9.75e-11 | 29 |
regional part of telencephalon | 9.75e-11 | 29 |
telencephalon | 9.75e-11 | 29 |
anterior neural tube | 4.58e-10 | 40 |
regional part of forebrain | 2.16e-09 | 39 |
forebrain | 2.16e-09 | 39 |
future forebrain | 2.16e-09 | 39 |
posterior neural tube | 9.14e-08 | 12 |
chordal neural plate | 9.14e-08 | 12 |
autonomic nervous system | 5.83e-07 | 9 |