FFCP PHASE1:Mm9::chr1:168931588..168931602,+: Difference between revisions
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{{FFCP|EntrezGene=226610|HGNC=|MCL_coexpression_id=150|UniProt=Q8BQN5|association_with_transcript=0bp_to_ENSMUST00000126198_5end|description=CAGE_peak_3_at_Fam78b_5end|id=chr1:168931588..168931602,+|ontology_enrichment_celltype=CL:0000540!1.75e-17!33;CL:0000047!1.75e-17!33;CL:0000031!1.75e-17!33;CL:0000404!1.75e-17!33;CL:0000393!3.36e-17!39;CL:0000211!3.36e-17!39;CL:0000221!1.72e-13!44;CL:0000133!1.72e-13!44;CL:0002319!1.95e-13!43;CL:0000055!3.96e-13!50;CL:0000117!3.89e-10!23;CL:0000337!3.89e-10!23;CL:0000107!2.03e-08!9|ontology_enrichment_celltype_v019_2=CL:0000540,1.60e-32,33;CL:0000047,1.60e-32,33;CL:0000031,1.60e-32,33;CL:0000404,1.60e-32,33;CL:0000393,1.83e-29,39;CL:0000211,1.83e-29,39;CL:0002319,1.49e-26,43;CL:0000221,7.67e-26,44;CL:0000133,7.67e-26,44;CL:0000107,8.41e-24,9;CL:0002321,6.02e-16,70;CL:0000117,9.63e-15,23;CL:0000337,9.63e-15,23;CL:0000034,1.06e-12,97;CL:0000723,6.73e-10,91;CL:0000048,6.73e-10,91;CL:0000349,1.46e-09,3;CL:0000351,1.46e-09,3;CL:0000120,2.96e-09,3;CL:0002613,3.37e-09,3;CL:0002612,1.10e-08,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!7.06e-12!102;UBERON:0000924!7.06e-12!102;UBERON:0006601!7.06e-12!102;UBERON:0000010!2.05e-09!11;UBERON:0000073!3.00e-09!75;UBERON:0001016!3.00e-09!75;UBERON:0001017!1.97e-08!73;UBERON:0005743!1.97e-08!73;UBERON:0002410!2.03e-08!9|ontology_enrichment_uberon_v019_2=UBERON:0000010,8.26e-24,11;UBERON:0002410,8.41e-24,9;UBERON:0001016,3.57e-13,75;UBERON:0001017,3.55e-12,73;UBERON:0004121,1.43e-10,95;UBERON:0000924,1.43e-10,95;UBERON:0006601,1.43e-10,95;UBERON:0005631,6.21e-10,3;UBERON:0000478,6.21e-10,3;UBERON:0000158,6.21e-10,3;UBERON:0000358,1.46e-09,3;UBERON:0000307,1.46e-09,3;UBERON:0007010,1.46e-09,3;UBERON:0000013,1.66e-09,3;UBERON:0000011,7.16e-09,3;UBERON:0002257,1.10e-08,3;UBERON:0010313,1.25e-08,3;UBERON:0002342,1.25e-08,3;UBERON:0002005,1.25e-08,3;UBERON:0005428,1.25e-08,3;UBERON:0005062,1.25e-08,3;UBERON:0001987,2.29e-07,2;UBERON:0003124,2.29e-07,2;UBERON:0004340,2.29e-07,2;UBERON:0005795,2.55e-07,4;UBERON:0000995,2.55e-07,4|phase1_expression=0.640595388419176,0,0,0,0,0,0,0,0,0,0.171217968225505,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22940928106717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.377690453926732,0.101376931219515,0.734187008646726,0,0,0,0,0,0,0,0,0,0,0,1.03134418455488,4.45096213891115,1.5869729378161,3.80298842103708,0,0,0.449949858640699,0,0,0.299600110518405,0,0.622137673850866,0.810035629990144,0.841299845405528,0.856952953211411,0.441737081903227,1.22490799214954,0.383381884072945,1.83843757322004,1.10115880999389,0.127687338085188,0.153606533256243,4.08847491963601,2.37867873366265,2.08365348222704,0,0,0,2.06240009831567,1.85083185038834,2.23679334990361,0.37863096666592,2.72057616384428,0,0,0,0,0,0,0.421333260395256,0,0,0,0.14084341977668,0,0,0,0,0,0,0,0.517875767294343,0.148442139064825,0.173485326766136,0.608930956624282,0,0.150722640552623,0,0.376999773989026,2.96633961281249,0,0,0,0.220841518460394,0.484875253135222,0,0.878342391034642,0.83778682725382,0,0,0,0,0,0,0.879580464790051,0.173824320192276,0,0,0,0.101839363850316,0.497627882440372,0,0,0.260240885925407,0.229902104433473,0.900310649026746,0.30140963567143,0.680364991513279,0.640568601424249,0.468508622798644,0.517406741478031,0.215567992932842,0,0.175951124163949,0,0,0,0,0.199034266818493,0,0,0,0.207125772535502,0,0,0,0,0,0,0,0,0.329119699826961,0.164167464079095,0.243206428637567,0.146199987425332,0.219550115291051,0.134206418760372,0,0.92614151141356,0,0,0.213288250535234,0.232236671860439,0.128867461322093,0.201683524623343,0.22237804384487,0,0,0.164698954724011,0,0,0,0,0,0,0,0,0,0,0,0,0.0632365371242573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586058432961016,0.163934945376675,0.252470927204373,2.52406575533005,2.34263246577983,1.07711698866399,1.19484398976276,2.22798674082394,4.52922449262132,3.23848561339915,3.21481443702443,3.16230222357219,0.321321316421807,0.141940085208269,0.178065603667255,0,0,0,0.485561272309963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164549020602121,0,24.8752010547533,23.7251919367479,0,0,0.322928853391811,0.0603129249281559,0.119372344003136,0,0,0.556275906031529,0,0,0.370389054739423,0,0,0.228778173206523,0,0,0,0,0.632671987162271,0.203319467126849,0.108005340821801,0,0,0,0.0826534557253359,0.26175594198403,0,0,0,0,0,0.194451188344048,0,0.168956125490778,0,0,0,0,0,0,0,0,0,0.179026695667481,0,0.120195449519969,0,0,0,0,0.194915761479505,0,0,0.226730383615211,4.66170502085536,1.88399098879899,5.70807695637867,0.772758376128762,1.87682475451182,0,0.428736758158132,0,0,0.920650473014354,0,0.68741272937475,0,0,0,0,0.453142408984205,0,1.55681021376265,1.19707462020309,0.341467211508268,0.486213434136588,1.25767897576789,0.551530525350042,0.888986911206461,0.206035057238894,0.64183841918363,0,0.50695859978048,0.565879024158229,0.280924522409647,0.384150914429216,0.34461281373368,0.476293691283074,0.347652977834566,0.578727661391115,0,0.147198920134397,0,0.532427418478012,0,0,0.470546902076653,0.25384382367503,0.73171189149109,0.263069711437843,0.135804113845862,0.561142271657738,0.830445126869219,0.394017929502254,0.409231043169689,0.77468420592983,0,0.749431733813838,0.233931608445408,0.214871054048298,0.382576664137687,0,0|short_description=p3@Fam78b}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:226610 | |||
|HGNC= | |||
|MCL_coexpression_id=150 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q8BQN5 | |||
|association_with_transcript=0bp_to_ENSMUST00000126198_5end | |||
|cluster_id=chr1:168931588..168931602,+ | |||
|description=CAGE_peak_3_at_Fam78b_5end | |||
|id=chr1:168931588..168931602,+ | |||
|ontology_enrichment_celltype=CL:0000540!1.75e-17!33;CL:0000047!1.75e-17!33;CL:0000031!1.75e-17!33;CL:0000404!1.75e-17!33;CL:0000393!3.36e-17!39;CL:0000211!3.36e-17!39;CL:0000221!1.72e-13!44;CL:0000133!1.72e-13!44;CL:0002319!1.95e-13!43;CL:0000055!3.96e-13!50;CL:0000117!3.89e-10!23;CL:0000337!3.89e-10!23;CL:0000107!2.03e-08!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.60e-32,33;CL:0000047,1.60e-32,33;CL:0000031,1.60e-32,33;CL:0000404,1.60e-32,33;CL:0000393,1.83e-29,39;CL:0000211,1.83e-29,39;CL:0002319,1.49e-26,43;CL:0000221,7.67e-26,44;CL:0000133,7.67e-26,44;CL:0000107,8.41e-24,9;CL:0002321,6.02e-16,70;CL:0000117,9.63e-15,23;CL:0000337,9.63e-15,23;CL:0000034,1.06e-12,97;CL:0000723,6.73e-10,91;CL:0000048,6.73e-10,91;CL:0000349,1.46e-09,3;CL:0000351,1.46e-09,3;CL:0000120,2.96e-09,3;CL:0002613,3.37e-09,3;CL:0002612,1.10e-08,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!7.06e-12!102;UBERON:0000924!7.06e-12!102;UBERON:0006601!7.06e-12!102;UBERON:0000010!2.05e-09!11;UBERON:0000073!3.00e-09!75;UBERON:0001016!3.00e-09!75;UBERON:0001017!1.97e-08!73;UBERON:0005743!1.97e-08!73;UBERON:0002410!2.03e-08!9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000010,8.26e-24,11;UBERON:0002410,8.41e-24,9;UBERON:0001016,3.57e-13,75;UBERON:0001017,3.55e-12,73;UBERON:0004121,1.43e-10,95;UBERON:0000924,1.43e-10,95;UBERON:0006601,1.43e-10,95;UBERON:0005631,6.21e-10,3;UBERON:0000478,6.21e-10,3;UBERON:0000158,6.21e-10,3;UBERON:0000358,1.46e-09,3;UBERON:0000307,1.46e-09,3;UBERON:0007010,1.46e-09,3;UBERON:0000013,1.66e-09,3;UBERON:0000011,7.16e-09,3;UBERON:0002257,1.10e-08,3;UBERON:0010313,1.25e-08,3;UBERON:0002342,1.25e-08,3;UBERON:0002005,1.25e-08,3;UBERON:0005428,1.25e-08,3;UBERON:0005062,1.25e-08,3;UBERON:0001987,2.29e-07,2;UBERON:0003124,2.29e-07,2;UBERON:0004340,2.29e-07,2;UBERON:0005795,2.55e-07,4;UBERON:0000995,2.55e-07,4 | |||
|phase1_expression=0.640595388419176,0,0,0,0,0,0,0,0,0,0.171217968225505,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22940928106717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.377690453926732,0.101376931219515,0.734187008646726,0,0,0,0,0,0,0,0,0,0,0,1.03134418455488,4.45096213891115,1.5869729378161,3.80298842103708,0,0,0.449949858640699,0,0,0.299600110518405,0,0.622137673850866,0.810035629990144,0.841299845405528,0.856952953211411,0.441737081903227,1.22490799214954,0.383381884072945,1.83843757322004,1.10115880999389,0.127687338085188,0.153606533256243,4.08847491963601,2.37867873366265,2.08365348222704,0,0,0,2.06240009831567,1.85083185038834,2.23679334990361,0.37863096666592,2.72057616384428,0,0,0,0,0,0,0.421333260395256,0,0,0,0.14084341977668,0,0,0,0,0,0,0,0.517875767294343,0.148442139064825,0.173485326766136,0.608930956624282,0,0.150722640552623,0,0.376999773989026,2.96633961281249,0,0,0,0.220841518460394,0.484875253135222,0,0.878342391034642,0.83778682725382,0,0,0,0,0,0,0.879580464790051,0.173824320192276,0,0,0,0.101839363850316,0.497627882440372,0,0,0.260240885925407,0.229902104433473,0.900310649026746,0.30140963567143,0.680364991513279,0.640568601424249,0.468508622798644,0.517406741478031,0.215567992932842,0,0.175951124163949,0,0,0,0,0.199034266818493,0,0,0,0.207125772535502,0,0,0,0,0,0,0,0,0.329119699826961,0.164167464079095,0.243206428637567,0.146199987425332,0.219550115291051,0.134206418760372,0,0.92614151141356,0,0,0.213288250535234,0.232236671860439,0.128867461322093,0.201683524623343,0.22237804384487,0,0,0.164698954724011,0,0,0,0,0,0,0,0,0,0,0,0,0.0632365371242573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586058432961016,0.163934945376675,0.252470927204373,2.52406575533005,2.34263246577983,1.07711698866399,1.19484398976276,2.22798674082394,4.52922449262132,3.23848561339915,3.21481443702443,3.16230222357219,0.321321316421807,0.141940085208269,0.178065603667255,0,0,0,0.485561272309963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164549020602121,0,24.8752010547533,23.7251919367479,0,0,0.322928853391811,0.0603129249281559,0.119372344003136,0,0,0.556275906031529,0,0,0.370389054739423,0,0,0.228778173206523,0,0,0,0,0.632671987162271,0.203319467126849,0.108005340821801,0,0,0,0.0826534557253359,0.26175594198403,0,0,0,0,0,0.194451188344048,0,0.168956125490778,0,0,0,0,0,0,0,0,0,0.179026695667481,0,0.120195449519969,0,0,0,0,0.194915761479505,0,0,0.226730383615211,4.66170502085536,1.88399098879899,5.70807695637867,0.772758376128762,1.87682475451182,0,0.428736758158132,0,0,0.920650473014354,0,0.68741272937475,0,0,0,0,0.453142408984205,0,1.55681021376265,1.19707462020309,0.341467211508268,0.486213434136588,1.25767897576789,0.551530525350042,0.888986911206461,0.206035057238894,0.64183841918363,0,0.50695859978048,0.565879024158229,0.280924522409647,0.384150914429216,0.34461281373368,0.476293691283074,0.347652977834566,0.578727661391115,0,0.147198920134397,0,0.532427418478012,0,0,0.470546902076653,0.25384382367503,0.73171189149109,0.263069711437843,0.135804113845862,0.561142271657738,0.830445126869219,0.394017929502254,0.409231043169689,0.77468420592983,0,0.749431733813838,0.233931608445408,0.214871054048298,0.382576664137687,0,0 | |||
|short_description=p3@Fam78b | |||
}} |
Revision as of 04:43, 5 August 2015
Short description: | p3@Fam78b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Fam78b_5end |
Coexpression cluster: | MCL_coexpression_mm9:150 |
Association with transcript: | 0bp_to_ENSMUST00000126198_5end |
EntrezGene: | 226610 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.60e-32 | 33 |
neuronal stem cell | 1.60e-32 | 33 |
neuroblast | 1.60e-32 | 33 |
electrically signaling cell | 1.60e-32 | 33 |
electrically responsive cell | 1.83e-29 | 39 |
electrically active cell | 1.83e-29 | 39 |
neural cell | 1.49e-26 | 43 |
ectodermal cell | 7.67e-26 | 44 |
neurectodermal cell | 7.67e-26 | 44 |
autonomic neuron | 8.41e-24 | 9 |
embryonic cell | 6.02e-16 | 70 |
CNS neuron (sensu Vertebrata) | 9.63e-15 | 23 |
neuroblast (sensu Vertebrata) | 9.63e-15 | 23 |
stem cell | 1.06e-12 | 97 |
somatic stem cell | 6.73e-10 | 91 |
multi fate stem cell | 6.73e-10 | 91 |
extraembryonic cell | 1.46e-09 | 3 |
trophoblast cell | 1.46e-09 | 3 |
granule cell | 2.96e-09 | 3 |
striatum neuron | 3.37e-09 | 3 |
neuron of the ventral spinal cord | 1.10e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
peripheral nervous system | 8.26e-24 | 11 |
autonomic nervous system | 8.41e-24 | 9 |
nervous system | 3.57e-13 | 75 |
central nervous system | 3.55e-12 | 73 |
ectoderm-derived structure | 1.43e-10 | 95 |
ectoderm | 1.43e-10 | 95 |
presumptive ectoderm | 1.43e-10 | 95 |
extraembryonic membrane | 6.21e-10 | 3 |
extraembryonic structure | 6.21e-10 | 3 |
membranous layer | 6.21e-10 | 3 |
blastocyst | 1.46e-09 | 3 |
blastula | 1.46e-09 | 3 |
cleaving embryo | 1.46e-09 | 3 |
sympathetic nervous system | 1.66e-09 | 3 |
parasympathetic nervous system | 7.16e-09 | 3 |
ventral horn of spinal cord | 1.10e-08 | 3 |
neural crest-derived structure | 1.25e-08 | 3 |
neural crest | 1.25e-08 | 3 |
enteric nervous system | 1.25e-08 | 3 |
vagal neural crest | 1.25e-08 | 3 |
neural fold | 1.25e-08 | 3 |
placenta | 2.29e-07 | 2 |
chorion | 2.29e-07 | 2 |
allantois | 2.29e-07 | 2 |
embryonic uterus | 2.55e-07 | 4 |
uterus | 2.55e-07 | 4 |