FFCP PHASE1:Mm9::chr12:88784750..88784800,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=211064|HGNC=|MCL_coexpression_id=155|UniProt=E0CY72,E0CX46,E0CYA7,P0CB42,E0CZH7|association_with_transcript=0bp_to_ENSMUST00000159079,ENSMUST00000160113,ENSMUST00000160850,ENSMUST00000161712,ENSMUST00000162247,ENSMUST00000162961,ENSMUST00000162986,NM_001102565,uc007oix.1,uc007oiy.1,uc007oiz.1,uc007oja.1,uc007ojb.1_5end|description=CAGE_peak_1_at_Alkbh1_5end|id=chr12:88784750..88784800,-|ontology_enrichment_celltype=CL:0000988!1.34e-09!32;CL:0002032!1.34e-09!32;CL:0000037!1.34e-09!32;CL:0000566!1.34e-09!32;CL:0000837!1.34e-09!32;CL:0000542!1.82e-09!13;CL:0000051!1.82e-09!13;CL:0000838!4.70e-09!12;CL:0000084!1.97e-08!11;CL:0000827!1.97e-08!11;CL:0000791!2.84e-07!9;CL:0000789!2.84e-07!9;CL:0002420!2.84e-07!9;CL:0002419!2.84e-07!9;CL:0000790!2.84e-07!9|ontology_enrichment_celltype_v019_2=CL:0000988,1.34e-09,32;CL:0002032,1.34e-09,32;CL:0000037,1.34e-09,32;CL:0000837,1.34e-09,32;CL:0000542,1.82e-09,13;CL:0000051,1.82e-09,13;CL:0000838,4.70e-09,12;CL:0000084,1.97e-08,11;CL:0000827,1.97e-08,11;CL:0000791,2.84e-07,9;CL:0000789,2.84e-07,9;CL:0002420,2.84e-07,9;CL:0002419,2.84e-07,9;CL:0000790,2.84e-07,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004177!4.19e-07!29;UBERON:0002370!6.07e-07!23;UBERON:0000974!6.07e-07!23;UBERON:0004807!6.07e-07!23;UBERON:0005058!6.07e-07!23;UBERON:0003351!6.07e-07!23;UBERON:0009113!6.07e-07!23;UBERON:0003295!6.07e-07!23;UBERON:0009722!6.07e-07!23;UBERON:0005562!6.07e-07!23;UBERON:0007690!6.07e-07!23|ontology_enrichment_uberon_v019_2=UBERON:0000153,5.19e-09,43;UBERON:0004177,4.19e-07,29;UBERON:0005057,4.19e-07,29;UBERON:0002370,6.07e-07,23;UBERON:0000974,6.07e-07,23;UBERON:0004807,6.07e-07,23;UBERON:0005058,6.07e-07,23;UBERON:0003351,6.07e-07,23;UBERON:0009113,6.07e-07,23;UBERON:0003295,6.07e-07,23;UBERON:0009722,6.07e-07,23;UBERON:0005562,6.07e-07,23;UBERON:0007690,6.07e-07,23|phase1_expression=26.424559772291,16.40184415905,12.2849794635175,15.7281389879552,15.0268718983904,22.831580980017,18.4553986070465,47.1300130561753,101.931034837807,114.457553371455,78.2466114790558,86.4730203509447,47.0802007310816,57.6100451941193,21.9852442798337,20.2475267389826,17.4890469532037,41.7987369099665,39.4889568784528,33.5267824920444,19.559956734746,45.6738375524072,41.5307664730907,10.0795226359846,13.0763290208287,9.18771142584032,9.47676391549965,12.9282739611533,8.93110071444957,11.5933859689568,15.7428662565266,69.8533740805594,68.2721914218873,47.5445043046316,44.194297821945,36.0729180427928,43.692242240147,6.69650609179052,4.6880120671428,7.85285615960697,4.70585190424811,6.14740936462601,7.76816564849846,12.3378881616066,12.6721164024393,13.0318194034794,12.5182615095686,10.247182349881,7.46933021297204,7.58276606389705,7.13930750289349,4.31257693094915,48.4891731506858,39.1695556686126,50.0779760722271,14.1492689819771,13.1805382371828,13.9231464914909,17.1968991730658,13.7537654610729,21.5502677192101,10.165335962074,8.00365316500025,16.1981949110652,19.7773272513395,13.4991221839759,12.583204641773,8.4528027170742,17.5235444801327,16.3357185381346,16.1950220240564,15.4251531578054,13.4729809980484,20.5784542681123,23.1946039864132,20.2228133054205,13.2139057199266,10.4703617229854,9.67721159514334,16.8814448294648,18.6634792948916,17.1901412283731,11.1673199600552,9.00420176050688,12.835052813252,13.258286346315,14.5219114415085,18.8263440283554,22.5664056132888,12.0158780569789,20.8702431865208,14.6272059086836,25.1589393471868,11.3337670243942,20.1430689408777,25.9855594516455,8.70755404816862,12.7822741933543,8.83272415649754,5.65343319216544,26.3377194982393,20.5322363862909,7.64415719119937,7.11066703153331,13.2059535016841,13.6814327356553,13.1436355703844,17.0133980781399,62.9219057262627,18.7037095221679,24.287945747259,20.3991870469135,19.1410862722529,22.3069508017881,24.5760397913623,14.325991411583,12.8541383221874,15.3275318335106,18.5768215909474,23.6179600923217,22.5258348829601,25.6983884161668,1.86391761218122,15.2246014446005,18.0124167859571,14.0501380364725,49.0043859229214,40.7933857075517,51.3363717375181,14.6794826616726,16.0125210986519,22.8690920845413,16.339486098074,12.7857728665165,11.0127663616567,16.061885043708,23.7285717771237,17.9146037678534,20.975988949995,15.3622554797126,32.3999902977132,25.0593293832485,25.3887603025542,29.2367346601287,32.3853735960321,27.1601087003882,20.9891863013793,18.1092359517311,29.1016790459337,35.55194307155,35.8940293294456,31.7833812019983,40.5948983869373,35.1734688187388,30.8673204611915,35.0300309600548,24.5774615559632,33.7125758320277,52.286083888789,27.1334762021507,21.8109235782419,23.0479438670099,24.1479630296914,23.8084720414359,22.3687313686698,20.2304531932855,17.9743178937745,18.9159854634815,14.8103864922132,18.5509234409378,13.2142159559745,12.2807989437279,8.56245449635098,11.0049263383505,14.7202963994889,18.9344486777883,9.25172592354634,13.4869788998408,33.699543584567,27.6361639513922,31.9591304078791,21.3784536100743,19.3468898145037,17.5007576023554,16.6085171540579,9.88193728344065,18.8501406600202,14.9217354030863,20.0813009732694,17.0775687644302,17.7233200897249,16.5287256801125,37.7439122896632,32.5608260937727,31.5581659884625,26.0673699642002,26.1835857676295,26.3009324588695,18.4650688402831,16.679946721695,16.327867695503,13.3268937035545,16.6013471168803,34.2032466717993,28.8941722816408,22.9359354632551,27.3861163874479,24.8412474544989,25.462585178142,24.1664755458681,30.9678283140318,17.2973690308491,20.1275489138296,23.0727387554472,19.0342980599882,16.9227848224565,12.5578189465339,13.9908621195376,14.4107488329952,30.1291344715071,31.289275476869,27.8381940671309,26.2853078083122,27.303519963016,18.5674039891091,19.3182311379221,14.817703545982,20.1532867580385,19.6129365448709,16.877921415721,17.4411831684555,11.4272756279394,10.5553898757491,12.5098307278303,23.1129208318947,30.0771053472158,10.2752377592187,12.6588621519579,11.1475762856139,14.1383719234449,28.7112479668794,22.645447169205,27.1433481143327,27.720380562496,25.8446461935577,37.6491785949147,25.0982635038434,26.3030272120181,28.4607200121497,16.3873871375122,26.5427959339462,22.7923972694087,31.4371831552402,23.2607873391275,15.9294166007955,30.1047988832177,22.9765903293211,28.1021568836288,22.7382457518195,24.5948118355142,30.4945385938501,27.2650297108129,31.7282666762402,37.2923374364263,31.6255825724996,30.9406629744561,30.2991249120871,27.5493473867905,22.8964870295475,19.5046701878749,27.1330557472679,30.5010678099541,26.6569413375436,27.7063103694285,13.1416156515678,12.2862601101016,11.688005096913,31.6581605647642,29.5479900853507,23.4617277970526,20.7707878565457,28.2322347561505,14.8655226681224,11.3109434226411,23.7510524309015,26.004745363366,24.6308721401717,24.8646363246192,29.1158705045784,24.7080427063044,39.2650173285806,40.3060182692135,37.3139929271944,9.54670618015114,29.1029114094645,33.54771207593,28.4054046361337,24.4633306336928,19.2159056096636,18.6112798011053,18.7623344496513,11.7790173892813,14.2576470620972,18.0188400795208,16.3470952218415,28.7071768404439,26.1424414922214,21.7785330945333,19.5031333451374,22.3022085647827,26.7574504112319,24.0878111961308,22.2301810182507,29.4732627407727,22.1783104818556,27.8089786152797,23.9215754042394,30.1970214064592,38.5864844244051,34.5521522638239,30.7956099910961,29.4478851323924,32.7870750327561,31.2995994839258,34.1406493814399,34.4825553167995,33.9153424974338,33.289297207554,28.2842103279397,15.6443964694496,21.0886655705361,26.3758738431859,22.1607693600584,12.9437028001568,23.4603094313977,30.9526245011678,24.0092584568554,20.5644562654499,15.8130515932779,13.8097570952153,13.7494923225455,14.9512268639008,10.9613203163303,12.0863023582352,10.8003600037089,12.158672487054,14.0474146785103,16.5683299760582,20.9650442120037,34.7151639858897,27.4881105264156,33.062513521288,18.8651846365184,19.8550989126015,24.8916335137809,26.5785223838174,24.0689407193861,27.7966932940177,26.6153264884752,25.4645560871203,28.3733767633744,29.0033940394058,32.5084754288771,23.3383908728706,26.0739733375925,27.2002000853824,32.1427002626579,26.7902034644603,20.2292858907395,32.1231209148401,25.7511085143107,29.3599761597304,28.7974704070912,28.8535812910617,30.3660434968802,27.3592499895357,25.3953692891762,19.0788372363631,24.557448751704,26.399201276651,26.1907867628601,29.7478735077055,27.7785519812844,22.4829520144151,18.9484602840781,23.6358159453128,21.6155815237793,17.4267221104417,19.0131625208746|short_description=p1@Alkbh1}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:211064 | |||
|HGNC= | |||
|MCL_coexpression_id=155 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:E0CY72,uniprot:E0CX46,uniprot:E0CYA7,uniprot:P0CB42,uniprot:E0CZH7 | |||
|association_with_transcript=0bp_to_ENSMUST00000159079,ENSMUST00000160113,ENSMUST00000160850,ENSMUST00000161712,ENSMUST00000162247,ENSMUST00000162961,ENSMUST00000162986,NM_001102565,uc007oix.1,uc007oiy.1,uc007oiz.1,uc007oja.1,uc007ojb.1_5end | |||
|cluster_id=chr12:88784750..88784800,- | |||
|description=CAGE_peak_1_at_Alkbh1_5end | |||
|id=chr12:88784750..88784800,- | |||
|ontology_enrichment_celltype=CL:0000988!1.34e-09!32;CL:0002032!1.34e-09!32;CL:0000037!1.34e-09!32;CL:0000566!1.34e-09!32;CL:0000837!1.34e-09!32;CL:0000542!1.82e-09!13;CL:0000051!1.82e-09!13;CL:0000838!4.70e-09!12;CL:0000084!1.97e-08!11;CL:0000827!1.97e-08!11;CL:0000791!2.84e-07!9;CL:0000789!2.84e-07!9;CL:0002420!2.84e-07!9;CL:0002419!2.84e-07!9;CL:0000790!2.84e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,1.34e-09,32;CL:0002032,1.34e-09,32;CL:0000037,1.34e-09,32;CL:0000837,1.34e-09,32;CL:0000542,1.82e-09,13;CL:0000051,1.82e-09,13;CL:0000838,4.70e-09,12;CL:0000084,1.97e-08,11;CL:0000827,1.97e-08,11;CL:0000791,2.84e-07,9;CL:0000789,2.84e-07,9;CL:0002420,2.84e-07,9;CL:0002419,2.84e-07,9;CL:0000790,2.84e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!4.19e-07!29;UBERON:0002370!6.07e-07!23;UBERON:0000974!6.07e-07!23;UBERON:0004807!6.07e-07!23;UBERON:0005058!6.07e-07!23;UBERON:0003351!6.07e-07!23;UBERON:0009113!6.07e-07!23;UBERON:0003295!6.07e-07!23;UBERON:0009722!6.07e-07!23;UBERON:0005562!6.07e-07!23;UBERON:0007690!6.07e-07!23 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000153,5.19e-09,43;UBERON:0004177,4.19e-07,29;UBERON:0005057,4.19e-07,29;UBERON:0002370,6.07e-07,23;UBERON:0000974,6.07e-07,23;UBERON:0004807,6.07e-07,23;UBERON:0005058,6.07e-07,23;UBERON:0003351,6.07e-07,23;UBERON:0009113,6.07e-07,23;UBERON:0003295,6.07e-07,23;UBERON:0009722,6.07e-07,23;UBERON:0005562,6.07e-07,23;UBERON:0007690,6.07e-07,23 | |||
|phase1_expression=26.424559772291,16.40184415905,12.2849794635175,15.7281389879552,15.0268718983904,22.831580980017,18.4553986070465,47.1300130561753,101.931034837807,114.457553371455,78.2466114790558,86.4730203509447,47.0802007310816,57.6100451941193,21.9852442798337,20.2475267389826,17.4890469532037,41.7987369099665,39.4889568784528,33.5267824920444,19.559956734746,45.6738375524072,41.5307664730907,10.0795226359846,13.0763290208287,9.18771142584032,9.47676391549965,12.9282739611533,8.93110071444957,11.5933859689568,15.7428662565266,69.8533740805594,68.2721914218873,47.5445043046316,44.194297821945,36.0729180427928,43.692242240147,6.69650609179052,4.6880120671428,7.85285615960697,4.70585190424811,6.14740936462601,7.76816564849846,12.3378881616066,12.6721164024393,13.0318194034794,12.5182615095686,10.247182349881,7.46933021297204,7.58276606389705,7.13930750289349,4.31257693094915,48.4891731506858,39.1695556686126,50.0779760722271,14.1492689819771,13.1805382371828,13.9231464914909,17.1968991730658,13.7537654610729,21.5502677192101,10.165335962074,8.00365316500025,16.1981949110652,19.7773272513395,13.4991221839759,12.583204641773,8.4528027170742,17.5235444801327,16.3357185381346,16.1950220240564,15.4251531578054,13.4729809980484,20.5784542681123,23.1946039864132,20.2228133054205,13.2139057199266,10.4703617229854,9.67721159514334,16.8814448294648,18.6634792948916,17.1901412283731,11.1673199600552,9.00420176050688,12.835052813252,13.258286346315,14.5219114415085,18.8263440283554,22.5664056132888,12.0158780569789,20.8702431865208,14.6272059086836,25.1589393471868,11.3337670243942,20.1430689408777,25.9855594516455,8.70755404816862,12.7822741933543,8.83272415649754,5.65343319216544,26.3377194982393,20.5322363862909,7.64415719119937,7.11066703153331,13.2059535016841,13.6814327356553,13.1436355703844,17.0133980781399,62.9219057262627,18.7037095221679,24.287945747259,20.3991870469135,19.1410862722529,22.3069508017881,24.5760397913623,14.325991411583,12.8541383221874,15.3275318335106,18.5768215909474,23.6179600923217,22.5258348829601,25.6983884161668,1.86391761218122,15.2246014446005,18.0124167859571,14.0501380364725,49.0043859229214,40.7933857075517,51.3363717375181,14.6794826616726,16.0125210986519,22.8690920845413,16.339486098074,12.7857728665165,11.0127663616567,16.061885043708,23.7285717771237,17.9146037678534,20.975988949995,15.3622554797126,32.3999902977132,25.0593293832485,25.3887603025542,29.2367346601287,32.3853735960321,27.1601087003882,20.9891863013793,18.1092359517311,29.1016790459337,35.55194307155,35.8940293294456,31.7833812019983,40.5948983869373,35.1734688187388,30.8673204611915,35.0300309600548,24.5774615559632,33.7125758320277,52.286083888789,27.1334762021507,21.8109235782419,23.0479438670099,24.1479630296914,23.8084720414359,22.3687313686698,20.2304531932855,17.9743178937745,18.9159854634815,14.8103864922132,18.5509234409378,13.2142159559745,12.2807989437279,8.56245449635098,11.0049263383505,14.7202963994889,18.9344486777883,9.25172592354634,13.4869788998408,33.699543584567,27.6361639513922,31.9591304078791,21.3784536100743,19.3468898145037,17.5007576023554,16.6085171540579,9.88193728344065,18.8501406600202,14.9217354030863,20.0813009732694,17.0775687644302,17.7233200897249,16.5287256801125,37.7439122896632,32.5608260937727,31.5581659884625,26.0673699642002,26.1835857676295,26.3009324588695,18.4650688402831,16.679946721695,16.327867695503,13.3268937035545,16.6013471168803,34.2032466717993,28.8941722816408,22.9359354632551,27.3861163874479,24.8412474544989,25.462585178142,24.1664755458681,30.9678283140318,17.2973690308491,20.1275489138296,23.0727387554472,19.0342980599882,16.9227848224565,12.5578189465339,13.9908621195376,14.4107488329952,30.1291344715071,31.289275476869,27.8381940671309,26.2853078083122,27.303519963016,18.5674039891091,19.3182311379221,14.817703545982,20.1532867580385,19.6129365448709,16.877921415721,17.4411831684555,11.4272756279394,10.5553898757491,12.5098307278303,23.1129208318947,30.0771053472158,10.2752377592187,12.6588621519579,11.1475762856139,14.1383719234449,28.7112479668794,22.645447169205,27.1433481143327,27.720380562496,25.8446461935577,37.6491785949147,25.0982635038434,26.3030272120181,28.4607200121497,16.3873871375122,26.5427959339462,22.7923972694087,31.4371831552402,23.2607873391275,15.9294166007955,30.1047988832177,22.9765903293211,28.1021568836288,22.7382457518195,24.5948118355142,30.4945385938501,27.2650297108129,31.7282666762402,37.2923374364263,31.6255825724996,30.9406629744561,30.2991249120871,27.5493473867905,22.8964870295475,19.5046701878749,27.1330557472679,30.5010678099541,26.6569413375436,27.7063103694285,13.1416156515678,12.2862601101016,11.688005096913,31.6581605647642,29.5479900853507,23.4617277970526,20.7707878565457,28.2322347561505,14.8655226681224,11.3109434226411,23.7510524309015,26.004745363366,24.6308721401717,24.8646363246192,29.1158705045784,24.7080427063044,39.2650173285806,40.3060182692135,37.3139929271944,9.54670618015114,29.1029114094645,33.54771207593,28.4054046361337,24.4633306336928,19.2159056096636,18.6112798011053,18.7623344496513,11.7790173892813,14.2576470620972,18.0188400795208,16.3470952218415,28.7071768404439,26.1424414922214,21.7785330945333,19.5031333451374,22.3022085647827,26.7574504112319,24.0878111961308,22.2301810182507,29.4732627407727,22.1783104818556,27.8089786152797,23.9215754042394,30.1970214064592,38.5864844244051,34.5521522638239,30.7956099910961,29.4478851323924,32.7870750327561,31.2995994839258,34.1406493814399,34.4825553167995,33.9153424974338,33.289297207554,28.2842103279397,15.6443964694496,21.0886655705361,26.3758738431859,22.1607693600584,12.9437028001568,23.4603094313977,30.9526245011678,24.0092584568554,20.5644562654499,15.8130515932779,13.8097570952153,13.7494923225455,14.9512268639008,10.9613203163303,12.0863023582352,10.8003600037089,12.158672487054,14.0474146785103,16.5683299760582,20.9650442120037,34.7151639858897,27.4881105264156,33.062513521288,18.8651846365184,19.8550989126015,24.8916335137809,26.5785223838174,24.0689407193861,27.7966932940177,26.6153264884752,25.4645560871203,28.3733767633744,29.0033940394058,32.5084754288771,23.3383908728706,26.0739733375925,27.2002000853824,32.1427002626579,26.7902034644603,20.2292858907395,32.1231209148401,25.7511085143107,29.3599761597304,28.7974704070912,28.8535812910617,30.3660434968802,27.3592499895357,25.3953692891762,19.0788372363631,24.557448751704,26.399201276651,26.1907867628601,29.7478735077055,27.7785519812844,22.4829520144151,18.9484602840781,23.6358159453128,21.6155815237793,17.4267221104417,19.0131625208746 | |||
|short_description=p1@Alkbh1 | |||
}} |
Revision as of 11:07, 5 August 2015
Short description: | p1@Alkbh1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Alkbh1_5end |
Coexpression cluster: | MCL_coexpression_mm9:155 |
Association with transcript: | 0bp_to_ENSMUST00000159079, ENSMUST00000160113, ENSMUST00000160850, ENSMUST00000161712, ENSMUST00000162247, ENSMUST00000162961, ENSMUST00000162986, NM_001102565, uc007oix.1, uc007oiy.1, uc007oiz.1, uc007oja.1, uc007ojb.1_5end |
EntrezGene: | 211064 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 1.34e-09 | 32 |
hematopoietic oligopotent progenitor cell | 1.34e-09 | 32 |
hematopoietic stem cell | 1.34e-09 | 32 |
hematopoietic multipotent progenitor cell | 1.34e-09 | 32 |
lymphocyte | 1.82e-09 | 13 |
common lymphoid progenitor | 1.82e-09 | 13 |
lymphoid lineage restricted progenitor cell | 4.70e-09 | 12 |
T cell | 1.97e-08 | 11 |
pro-T cell | 1.97e-08 | 11 |
mature alpha-beta T cell | 2.84e-07 | 9 |
alpha-beta T cell | 2.84e-07 | 9 |
immature T cell | 2.84e-07 | 9 |
mature T cell | 2.84e-07 | 9 |
immature alpha-beta T cell | 2.84e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
anterior region of body | 5.19e-09 | 43 |
hemopoietic organ | 4.19e-07 | 29 |
immune organ | 4.19e-07 | 29 |
thymus | 6.07e-07 | 23 |
neck | 6.07e-07 | 23 |
respiratory system epithelium | 6.07e-07 | 23 |
hemolymphoid system gland | 6.07e-07 | 23 |
pharyngeal epithelium | 6.07e-07 | 23 |
thymic region | 6.07e-07 | 23 |
pharyngeal gland | 6.07e-07 | 23 |
entire pharyngeal arch endoderm | 6.07e-07 | 23 |
thymus primordium | 6.07e-07 | 23 |
early pharyngeal endoderm | 6.07e-07 | 23 |