FFCP PHASE1:Mm9::chr11:120459934..120459954,+: Difference between revisions
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{{FFCP|EntrezGene=66156|HGNC=|MCL_coexpression_id=1280|UniProt=Q9CPX9,A2ABX9|association_with_transcript=88bp_to_ENSMUST00000093140,NM_001038230,uc007mtn.2_5end|description=CAGE_peak_4_at_Anapc11_5end|id=chr11:120459934..120459954,+|ontology_enrichment_celltype=CL:0000221!1.37e-11!44;CL:0000133!1.37e-11!44;CL:0002319!3.63e-11!43;CL:0000055!3.83e-11!50;CL:0002321!1.49e-07!70;CL:0000220!1.49e-07!70;CL:0000393!2.50e-07!39;CL:0000211!2.50e-07!39;CL:0000540!9.73e-07!33;CL:0000047!9.73e-07!33;CL:0000031!9.73e-07!33;CL:0000404!9.73e-07!33|ontology_enrichment_celltype_v019_2=CL:0000221,1.43e-11,44;CL:0000133,1.43e-11,44;CL:0002319,3.82e-11,43;CL:0002321,1.23e-07,70;CL:0000393,2.86e-07,39;CL:0000211,2.86e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!8.48e-21!75;UBERON:0001016!8.48e-21!75;UBERON:0001017!2.30e-20!73;UBERON:0005743!2.30e-20!73;UBERON:0001049!7.62e-17!52;UBERON:0005068!7.62e-17!52;UBERON:0006241!7.62e-17!52;UBERON:0007135!7.62e-17!52;UBERON:0002616!4.99e-16!49;UBERON:0000955!5.48e-15!50;UBERON:0006238!5.48e-15!50;UBERON:0003080!7.91e-15!40;UBERON:0002346!2.10e-14!71;UBERON:0003075!2.10e-14!71;UBERON:0007284!2.10e-14!71;UBERON:0002780!2.65e-14!39;UBERON:0001890!2.65e-14!39;UBERON:0006240!2.65e-14!39;UBERON:0004121!3.04e-14!102;UBERON:0000924!3.04e-14!102;UBERON:0006601!3.04e-14!102;UBERON:0002020!5.02e-13!34;UBERON:0003056!5.65e-12!49;UBERON:0002791!1.09e-11!29;UBERON:0003528!1.09e-11!29;UBERON:0001893!1.09e-11!29;UBERON:0000033!1.18e-11!63;UBERON:0000956!3.76e-10!21;UBERON:0001869!3.76e-10!21;UBERON:0000203!3.76e-10!21;UBERON:0002619!6.52e-09!17;UBERON:0002021!2.41e-07!10;UBERON:0000411!2.41e-07!10;UBERON:0001950!2.41e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.41e-21,75;UBERON:0001017,1.22e-20,73;UBERON:0000073,7.43e-18,54;UBERON:0001049,3.77e-17,52;UBERON:0005068,3.77e-17,52;UBERON:0006241,3.77e-17,52;UBERON:0007135,3.77e-17,52;UBERON:0002616,1.06e-15,46;UBERON:0002346,1.19e-15,64;UBERON:0003075,1.19e-15,64;UBERON:0007284,1.19e-15,64;UBERON:0003080,4.34e-15,40;UBERON:0000955,9.12e-15,47;UBERON:0006238,9.12e-15,47;UBERON:0002780,1.49e-14,39;UBERON:0001890,1.49e-14,39;UBERON:0006240,1.49e-14,39;UBERON:0004121,1.74e-14,95;UBERON:0000924,1.74e-14,95;UBERON:0006601,1.74e-14,95;UBERON:0002020,2.99e-13,34;UBERON:0010314,4.65e-13,92;UBERON:0003056,3.26e-12,49;UBERON:0010371,3.91e-12,73;UBERON:0003528,6.92e-12,29;UBERON:0002791,6.92e-12,29;UBERON:0001893,6.92e-12,29;UBERON:0000956,2.55e-10,21;UBERON:0001869,2.55e-10,21;UBERON:0000203,2.55e-10,21;UBERON:0002619,4.67e-09,17;UBERON:0002021,1.85e-07,10;UBERON:0000411,1.85e-07,10;UBERON:0001950,1.85e-07,10|phase1_expression=0.960893082628764,1.04692622291808,1.81999695755814,0.90739263392049,1.00179145989269,0.671517087647559,1.16806320297763,0.129123323441576,0.140788722151667,0,0.68487187290202,0.0797721589953364,0.684802919724823,0.699363219351979,0.666219523631325,0.607425802169478,1.39912375625629,0.473193248037357,0.822686601634433,0.42438965179803,6.4632900514813,1.88652807281682,1.56719873483361,0.47997726838022,1.37645568640302,0.57423196411502,2.15380998079537,0.861884930743556,1.14014051673824,1.00812051903972,1.10865255327652,1.27006134691926,2.46025915033828,0,1.73310971850765,2.32728503501889,1.63335485009895,1.67412652294763,1.5626706890476,0.523523743973798,1.76469446409304,0.683045484958446,2.42755176515577,1.38486499773135,1.01376931219515,2.38610777810186,14.8654355426127,5.88667922227206,5.71184075109627,5.63846707315422,6.15940255151595,5.75010257459886,0.671130424230945,0.725362142011344,0.672187598284928,4.11615097657515,2.86533439938757,4.12537673821954,2.83243045203437,2.11596391708813,5.70448263155561,8.4711133017283,6.22506357277798,7.64914759689189,15.8218618010716,7.104801149461,11.9840044207362,9.98967593836042,2.59224030771194,2.70011876663381,2.52389953621658,2.85650984403804,2.87129103237098,2.81728838194394,2.39613677545591,3.67687514644008,2.20231761998777,1.91531007127782,4.14737639791857,1.31886287730194,1.64677758484337,2.6045668527838,4.74611098302348,3.37657566019008,3.97275444219706,2.35702868378934,3.27454865837937,2.42319279572891,2.04460721999597,2.72057616384428,0.869593466105033,0.860423876981386,2.03991400112325,1.07940638327563,0.649776417447669,0,1.68533304158102,3.2381761289831,5.97507810586598,5.65343319216544,3.80277233397037,1.28326477414318,0,0,3.89683873820185,4.30711771307668,4.54972000513305,1.37020655662872,1.03575153458869,1.92974780784272,2.08182392119363,1.82679286987285,1.38369298353635,1.80867168663147,0.940709657085638,1.38233250462643,0.988779870937496,0.578397427679647,0.884610551949874,1.61766849947409,1.10420759230197,0.484875253135222,1.86391761218122,0.585561594023094,1.46612694769419,1.02182822083437,1.43778149407104,2.39961092397363,1.14363204365758,4.79330046095433,4.57500602818627,3.01570445070875,7.82209440865244,4.60287823194595,3.53239675751252,3.40706652442291,1.83310854930569,1.49288364732112,2.274504825903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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:66156 | |||
|HGNC= | |||
|MCL_coexpression_id=1280 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q9CPX9,uniprot:A2ABX9 | |||
|association_with_transcript=88bp_to_ENSMUST00000093140,NM_001038230,uc007mtn.2_5end | |||
|cluster_id=chr11:120459934..120459954,+ | |||
|description=CAGE_peak_4_at_Anapc11_5end | |||
|id=chr11:120459934..120459954,+ | |||
|ontology_enrichment_celltype=CL:0000221!1.37e-11!44;CL:0000133!1.37e-11!44;CL:0002319!3.63e-11!43;CL:0000055!3.83e-11!50;CL:0002321!1.49e-07!70;CL:0000220!1.49e-07!70;CL:0000393!2.50e-07!39;CL:0000211!2.50e-07!39;CL:0000540!9.73e-07!33;CL:0000047!9.73e-07!33;CL:0000031!9.73e-07!33;CL:0000404!9.73e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,1.43e-11,44;CL:0000133,1.43e-11,44;CL:0002319,3.82e-11,43;CL:0002321,1.23e-07,70;CL:0000393,2.86e-07,39;CL:0000211,2.86e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!8.48e-21!75;UBERON:0001016!8.48e-21!75;UBERON:0001017!2.30e-20!73;UBERON:0005743!2.30e-20!73;UBERON:0001049!7.62e-17!52;UBERON:0005068!7.62e-17!52;UBERON:0006241!7.62e-17!52;UBERON:0007135!7.62e-17!52;UBERON:0002616!4.99e-16!49;UBERON:0000955!5.48e-15!50;UBERON:0006238!5.48e-15!50;UBERON:0003080!7.91e-15!40;UBERON:0002346!2.10e-14!71;UBERON:0003075!2.10e-14!71;UBERON:0007284!2.10e-14!71;UBERON:0002780!2.65e-14!39;UBERON:0001890!2.65e-14!39;UBERON:0006240!2.65e-14!39;UBERON:0004121!3.04e-14!102;UBERON:0000924!3.04e-14!102;UBERON:0006601!3.04e-14!102;UBERON:0002020!5.02e-13!34;UBERON:0003056!5.65e-12!49;UBERON:0002791!1.09e-11!29;UBERON:0003528!1.09e-11!29;UBERON:0001893!1.09e-11!29;UBERON:0000033!1.18e-11!63;UBERON:0000956!3.76e-10!21;UBERON:0001869!3.76e-10!21;UBERON:0000203!3.76e-10!21;UBERON:0002619!6.52e-09!17;UBERON:0002021!2.41e-07!10;UBERON:0000411!2.41e-07!10;UBERON:0001950!2.41e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.41e-21,75;UBERON:0001017,1.22e-20,73;UBERON:0000073,7.43e-18,54;UBERON:0001049,3.77e-17,52;UBERON:0005068,3.77e-17,52;UBERON:0006241,3.77e-17,52;UBERON:0007135,3.77e-17,52;UBERON:0002616,1.06e-15,46;UBERON:0002346,1.19e-15,64;UBERON:0003075,1.19e-15,64;UBERON:0007284,1.19e-15,64;UBERON:0003080,4.34e-15,40;UBERON:0000955,9.12e-15,47;UBERON:0006238,9.12e-15,47;UBERON:0002780,1.49e-14,39;UBERON:0001890,1.49e-14,39;UBERON:0006240,1.49e-14,39;UBERON:0004121,1.74e-14,95;UBERON:0000924,1.74e-14,95;UBERON:0006601,1.74e-14,95;UBERON:0002020,2.99e-13,34;UBERON:0010314,4.65e-13,92;UBERON:0003056,3.26e-12,49;UBERON:0010371,3.91e-12,73;UBERON:0003528,6.92e-12,29;UBERON:0002791,6.92e-12,29;UBERON:0001893,6.92e-12,29;UBERON:0000956,2.55e-10,21;UBERON:0001869,2.55e-10,21;UBERON:0000203,2.55e-10,21;UBERON:0002619,4.67e-09,17;UBERON:0002021,1.85e-07,10;UBERON:0000411,1.85e-07,10;UBERON:0001950,1.85e-07,10 | |||
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| |||
|short_description=p4@Anapc11 | |||
}} |
Revision as of 15:13, 5 August 2015
Short description: | p4@Anapc11 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Anapc11_5end |
Coexpression cluster: | MCL_coexpression_mm9:1280 |
Association with transcript: | 88bp_to_ENSMUST00000093140, NM_001038230, uc007mtn.2_5end |
EntrezGene: | 66156 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 1.43e-11 | 44 |
neurectodermal cell | 1.43e-11 | 44 |
neural cell | 3.82e-11 | 43 |
embryonic cell | 1.23e-07 | 70 |
electrically responsive cell | 2.86e-07 | 39 |
electrically active cell | 2.86e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
nervous system | 4.41e-21 | 75 |
central nervous system | 1.22e-20 | 73 |
regional part of nervous system | 7.43e-18 | 54 |
neural tube | 3.77e-17 | 52 |
neural rod | 3.77e-17 | 52 |
future spinal cord | 3.77e-17 | 52 |
neural keel | 3.77e-17 | 52 |
regional part of brain | 1.06e-15 | 46 |
neurectoderm | 1.19e-15 | 64 |
neural plate | 1.19e-15 | 64 |
presumptive neural plate | 1.19e-15 | 64 |
anterior neural tube | 4.34e-15 | 40 |
brain | 9.12e-15 | 47 |
future brain | 9.12e-15 | 47 |
regional part of forebrain | 1.49e-14 | 39 |
forebrain | 1.49e-14 | 39 |
future forebrain | 1.49e-14 | 39 |
ectoderm-derived structure | 1.74e-14 | 95 |
ectoderm | 1.74e-14 | 95 |
presumptive ectoderm | 1.74e-14 | 95 |
gray matter | 2.99e-13 | 34 |
structure with developmental contribution from neural crest | 4.65e-13 | 92 |
pre-chordal neural plate | 3.26e-12 | 49 |
ecto-epithelium | 3.91e-12 | 73 |
brain grey matter | 6.92e-12 | 29 |
regional part of telencephalon | 6.92e-12 | 29 |
telencephalon | 6.92e-12 | 29 |
cerebral cortex | 2.55e-10 | 21 |
cerebral hemisphere | 2.55e-10 | 21 |
pallium | 2.55e-10 | 21 |
regional part of cerebral cortex | 4.67e-09 | 17 |
occipital lobe | 1.85e-07 | 10 |
visual cortex | 1.85e-07 | 10 |
neocortex | 1.85e-07 | 10 |