FFCP PHASE1:Mm9::chrX:162676958..162676986,+: Difference between revisions
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{{FFCP|EntrezGene=14758|HGNC=|MCL_coexpression_id=1|UniProt=P35803|association_with_transcript=54bp_to_ENSMUST00000060210,ENSMUST00000112233_5end|description=CAGE_peak_3_at_Gpm6b_5end|id=chrX:162676958..162676986,+|ontology_enrichment_celltype=CL:0000221!3.24e-13!44;CL:0000133!3.24e-13!44;CL:0002319!9.17e-13!43;CL:0000055!1.75e-12!50;CL:0000393!5.88e-10!39;CL:0000211!5.88e-10!39;CL:0000540!2.18e-09!33;CL:0000047!2.18e-09!33;CL:0000031!2.18e-09!33;CL:0000404!2.18e-09!33|ontology_enrichment_celltype_v019_2=CL:0000221,2.84e-13,44;CL:0000133,2.84e-13,44;CL:0002319,8.42e-13,43;CL:0000393,6.52e-10,39;CL:0000211,6.52e-10,39;CL:0000540,1.60e-09,33;CL:0000047,1.60e-09,33;CL:0000031,1.60e-09,33;CL:0000404,1.60e-09,33;CL:0002321,1.24e-07,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!8.13e-25!75;UBERON:0001016!8.13e-25!75;UBERON:0004121!6.57e-24!102;UBERON:0000924!6.57e-24!102;UBERON:0006601!6.57e-24!102;UBERON:0001017!7.18e-24!73;UBERON:0005743!7.18e-24!73;UBERON:0000033!5.09e-17!63;UBERON:0001049!6.01e-16!52;UBERON:0005068!6.01e-16!52;UBERON:0006241!6.01e-16!52;UBERON:0007135!6.01e-16!52;UBERON:0002346!1.10e-15!71;UBERON:0003075!1.10e-15!71;UBERON:0007284!1.10e-15!71;UBERON:0000955!3.42e-15!50;UBERON:0006238!3.42e-15!50;UBERON:0002616!1.39e-14!49;UBERON:0002020!2.41e-14!34;UBERON:0002791!5.44e-12!29;UBERON:0003528!5.44e-12!29;UBERON:0001893!5.44e-12!29;UBERON:0003056!1.50e-11!49;UBERON:0003080!1.86e-10!40;UBERON:0002780!7.02e-10!39;UBERON:0001890!7.02e-10!39;UBERON:0006240!7.02e-10!39;UBERON:0000956!2.89e-09!21;UBERON:0001869!2.89e-09!21;UBERON:0000203!2.89e-09!21;UBERON:0002619!1.70e-08!17;UBERON:0002021!2.63e-07!10;UBERON:0000411!2.63e-07!10;UBERON:0001950!2.63e-07!10;UBERON:0000479!3.09e-07!349;UBERON:0007811!4.37e-07!86;UBERON:0004111!5.68e-07!122|ontology_enrichment_uberon_v019_2=UBERON:0004121,1.39e-26,95;UBERON:0000924,1.39e-26,95;UBERON:0006601,1.39e-26,95;UBERON:0001016,2.83e-25,75;UBERON:0001017,2.77e-24,73;UBERON:0010371,9.83e-19,73;UBERON:0002346,5.30e-18,64;UBERON:0003075,5.30e-18,64;UBERON:0007284,5.30e-18,64;UBERON:0000073,4.56e-17,54;UBERON:0001049,5.66e-16,52;UBERON:0005068,5.66e-16,52;UBERON:0006241,5.66e-16,52;UBERON:0007135,5.66e-16,52;UBERON:0002020,1.10e-14,34;UBERON:0000955,1.90e-13,47;UBERON:0006238,1.90e-13,47;UBERON:0002616,7.78e-13,46;UBERON:0003528,3.31e-12,29;UBERON:0002791,3.31e-12,29;UBERON:0001893,3.31e-12,29;UBERON:0003056,1.33e-11,49;UBERON:0010314,1.25e-10,92;UBERON:0003080,1.63e-10,40;UBERON:0002780,6.52e-10,39;UBERON:0001890,6.52e-10,39;UBERON:0006240,6.52e-10,39;UBERON:0000956,2.52e-09,21;UBERON:0001869,2.52e-09,21;UBERON:0000203,2.52e-09,21;UBERON:0002619,1.71e-08,17;UBERON:0002021,1.23e-07,10;UBERON:0000411,1.23e-07,10;UBERON:0001950,1.23e-07,10|phase1_expression=13.4525031568027,0,0,0,0,0.16787927191189,0,0.258246646883153,0,0,0,0,0,0,0,0.607425802169478,0,0.157731082679119,0.274228867211478,0.84877930359606,16.4133549991565,0,0,0.47997726838022,0.45881856213434,0,0,0.215471232685889,0,0,0,0,0,0,0,0,0.408338712524738,0,0,0,0,0,0,9.56815816614387,7.50189291024408,0.734187008646726,0.782391344348039,20.7123898561424,23.0670491871195,37.3305406222624,10.0790223570261,15.8127820801469,0,0,0,1.80081605225163,12.0344044774278,5.15672092277442,3.84401275633236,3.70293685490423,1.26766280701236,2.03306719241479,0.889294796111139,0,0.988866362566974,0.7104801149461,8.68840320503374,18.0582603501131,4.35496371695606,3.64516033495565,3.57552434297349,15.1395021734016,16.565140571371,3.55223317723367,2.68367318851062,0.919218786610021,36.3382407297983,56.9485527859937,48.3860579757167,2.2420668914133,3.11057988248193,5.73004707612436,36.5729728691809,38.2678574821542,51.493009500785,29.4628585473668,26.7658759902314,9.31997229126503,7.34544075331885,21.6890377506474,4.63783181922684,0,0,0,0,0,2.80888840263504,9.20323741921512,5.97507810586598,5.65343319216544,15.6336195952115,15.3991772897181,22.9324715735981,0,3.24736561516821,4.56047757855178,4.04419556011827,2.39786147410026,13.9826457169473,0.445326417194474,2.4287945747259,2.13125834818499,1.15307748628029,1.80867168663147,1.99900802130698,0,1.48316980640624,0.722996784599558,0.884610551949874,2.75003644910596,1.54589062922275,0.969750506270444,0,108.914456488296,101.581652804526,0.255457055208591,0,0,0,82.3848516726525,96.5326271947302,15.2041766056566,79.7853629682549,69.2988889365196,79.9983971554306,70.7371906975423,0.916554274652847,1.61729061793121,3.53811861807145,6.94458124425364,0.390361328888111,1.83921683546778,1.98068342785884,4.52114453507145,7.48401490664606,13.3238269096244,8.99536555773397,25.3529303324235,0.431135985865684,0.945530400839096,0.703804496655795,0.657587197282725,1.11218899690239,1.74126083261083,2.05782136407943,1.59227413454795,0,0,0,0.414251545071004,0.234526059981096,0.36012412292203,0.473489471170421,0.590292695242212,0.462801338662135,0.697601834251224,0.804820204198858,0.700592054203017,0.329119699826961,0.656669856316381,1.2160321431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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:14758 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:P35803 | |||
|association_with_transcript=54bp_to_ENSMUST00000060210,ENSMUST00000112233_5end | |||
|cluster_id=chrX:162676958..162676986,+ | |||
|description=CAGE_peak_3_at_Gpm6b_5end | |||
|id=chrX:162676958..162676986,+ | |||
|ontology_enrichment_celltype=CL:0000221!3.24e-13!44;CL:0000133!3.24e-13!44;CL:0002319!9.17e-13!43;CL:0000055!1.75e-12!50;CL:0000393!5.88e-10!39;CL:0000211!5.88e-10!39;CL:0000540!2.18e-09!33;CL:0000047!2.18e-09!33;CL:0000031!2.18e-09!33;CL:0000404!2.18e-09!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,2.84e-13,44;CL:0000133,2.84e-13,44;CL:0002319,8.42e-13,43;CL:0000393,6.52e-10,39;CL:0000211,6.52e-10,39;CL:0000540,1.60e-09,33;CL:0000047,1.60e-09,33;CL:0000031,1.60e-09,33;CL:0000404,1.60e-09,33;CL:0002321,1.24e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!8.13e-25!75;UBERON:0001016!8.13e-25!75;UBERON:0004121!6.57e-24!102;UBERON:0000924!6.57e-24!102;UBERON:0006601!6.57e-24!102;UBERON:0001017!7.18e-24!73;UBERON:0005743!7.18e-24!73;UBERON:0000033!5.09e-17!63;UBERON:0001049!6.01e-16!52;UBERON:0005068!6.01e-16!52;UBERON:0006241!6.01e-16!52;UBERON:0007135!6.01e-16!52;UBERON:0002346!1.10e-15!71;UBERON:0003075!1.10e-15!71;UBERON:0007284!1.10e-15!71;UBERON:0000955!3.42e-15!50;UBERON:0006238!3.42e-15!50;UBERON:0002616!1.39e-14!49;UBERON:0002020!2.41e-14!34;UBERON:0002791!5.44e-12!29;UBERON:0003528!5.44e-12!29;UBERON:0001893!5.44e-12!29;UBERON:0003056!1.50e-11!49;UBERON:0003080!1.86e-10!40;UBERON:0002780!7.02e-10!39;UBERON:0001890!7.02e-10!39;UBERON:0006240!7.02e-10!39;UBERON:0000956!2.89e-09!21;UBERON:0001869!2.89e-09!21;UBERON:0000203!2.89e-09!21;UBERON:0002619!1.70e-08!17;UBERON:0002021!2.63e-07!10;UBERON:0000411!2.63e-07!10;UBERON:0001950!2.63e-07!10;UBERON:0000479!3.09e-07!349;UBERON:0007811!4.37e-07!86;UBERON:0004111!5.68e-07!122 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,1.39e-26,95;UBERON:0000924,1.39e-26,95;UBERON:0006601,1.39e-26,95;UBERON:0001016,2.83e-25,75;UBERON:0001017,2.77e-24,73;UBERON:0010371,9.83e-19,73;UBERON:0002346,5.30e-18,64;UBERON:0003075,5.30e-18,64;UBERON:0007284,5.30e-18,64;UBERON:0000073,4.56e-17,54;UBERON:0001049,5.66e-16,52;UBERON:0005068,5.66e-16,52;UBERON:0006241,5.66e-16,52;UBERON:0007135,5.66e-16,52;UBERON:0002020,1.10e-14,34;UBERON:0000955,1.90e-13,47;UBERON:0006238,1.90e-13,47;UBERON:0002616,7.78e-13,46;UBERON:0003528,3.31e-12,29;UBERON:0002791,3.31e-12,29;UBERON:0001893,3.31e-12,29;UBERON:0003056,1.33e-11,49;UBERON:0010314,1.25e-10,92;UBERON:0003080,1.63e-10,40;UBERON:0002780,6.52e-10,39;UBERON:0001890,6.52e-10,39;UBERON:0006240,6.52e-10,39;UBERON:0000956,2.52e-09,21;UBERON:0001869,2.52e-09,21;UBERON:0000203,2.52e-09,21;UBERON:0002619,1.71e-08,17;UBERON:0002021,1.23e-07,10;UBERON:0000411,1.23e-07,10;UBERON:0001950,1.23e-07,10 | |||
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| |||
|short_description=p3@Gpm6b | |||
}} |
Revision as of 04:25, 6 August 2015
Short description: | p3@Gpm6b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Gpm6b_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 54bp_to_ENSMUST00000060210, ENSMUST00000112233_5end |
EntrezGene: | 14758 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 2.84e-13 | 44 |
neurectodermal cell | 2.84e-13 | 44 |
neural cell | 8.42e-13 | 43 |
electrically responsive cell | 6.52e-10 | 39 |
electrically active cell | 6.52e-10 | 39 |
neuron | 1.60e-09 | 33 |
neuronal stem cell | 1.60e-09 | 33 |
neuroblast | 1.60e-09 | 33 |
electrically signaling cell | 1.60e-09 | 33 |
embryonic cell | 1.24e-07 | 70 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 1.39e-26 | 95 |
ectoderm | 1.39e-26 | 95 |
presumptive ectoderm | 1.39e-26 | 95 |
nervous system | 2.83e-25 | 75 |
central nervous system | 2.77e-24 | 73 |
ecto-epithelium | 9.83e-19 | 73 |
neurectoderm | 5.30e-18 | 64 |
neural plate | 5.30e-18 | 64 |
presumptive neural plate | 5.30e-18 | 64 |
regional part of nervous system | 4.56e-17 | 54 |
neural tube | 5.66e-16 | 52 |
neural rod | 5.66e-16 | 52 |
future spinal cord | 5.66e-16 | 52 |
neural keel | 5.66e-16 | 52 |
gray matter | 1.10e-14 | 34 |
brain | 1.90e-13 | 47 |
future brain | 1.90e-13 | 47 |
regional part of brain | 7.78e-13 | 46 |
brain grey matter | 3.31e-12 | 29 |
regional part of telencephalon | 3.31e-12 | 29 |
telencephalon | 3.31e-12 | 29 |
pre-chordal neural plate | 1.33e-11 | 49 |
structure with developmental contribution from neural crest | 1.25e-10 | 92 |
anterior neural tube | 1.63e-10 | 40 |
regional part of forebrain | 6.52e-10 | 39 |
forebrain | 6.52e-10 | 39 |
future forebrain | 6.52e-10 | 39 |
cerebral cortex | 2.52e-09 | 21 |
cerebral hemisphere | 2.52e-09 | 21 |
pallium | 2.52e-09 | 21 |
regional part of cerebral cortex | 1.71e-08 | 17 |
occipital lobe | 1.23e-07 | 10 |
visual cortex | 1.23e-07 | 10 |
neocortex | 1.23e-07 | 10 |