FFCP PHASE1:Mm9::chr6:92164837..92164871,-: Difference between revisions
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{{FFCP|EntrezGene=78287|HGNC=|MCL_coexpression_id=873|UniProt=Q80Y56|association_with_transcript=-32bp_to_NM_030081,uc009cyv.1_5end|description=CAGE_peak_1_at_Zfyve20_5end|id=chr6:92164837..92164871,-|ontology_enrichment_celltype=CL:0000117!9.35e-09!23;CL:0000337!9.35e-09!23;CL:0000540!4.68e-07!33;CL:0000047!4.68e-07!33;CL:0000031!4.68e-07!33;CL:0000404!4.68e-07!33|ontology_enrichment_celltype_v019_2=CL:0000117,9.35e-09,23;CL:0000337,9.35e-09,23;CL:0000540,4.68e-07,33;CL:0000047,4.68e-07,33;CL:0000031,4.68e-07,33;CL:0000404,4.68e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!3.04e-16!63;UBERON:0000955!1.25e-15!50;UBERON:0006238!1.25e-15!50;UBERON:0002616!4.05e-15!49;UBERON:0001049!9.13e-15!52;UBERON:0005068!9.13e-15!52;UBERON:0006241!9.13e-15!52;UBERON:0007135!9.13e-15!52;UBERON:0003056!4.19e-14!49;UBERON:0004121!1.07e-13!102;UBERON:0000924!1.07e-13!102;UBERON:0006601!1.07e-13!102;UBERON:0001017!1.12e-13!73;UBERON:0005743!1.12e-13!73;UBERON:0002346!2.50e-13!71;UBERON:0003075!2.50e-13!71;UBERON:0007284!2.50e-13!71;UBERON:0003080!2.95e-13!40;UBERON:0000073!8.53e-13!75;UBERON:0001016!8.53e-13!75;UBERON:0002780!1.25e-12!39;UBERON:0001890!1.25e-12!39;UBERON:0006240!1.25e-12!39;UBERON:0002020!8.09e-12!34;UBERON:0000153!8.09e-12!94;UBERON:0002791!1.92e-11!29;UBERON:0003528!1.92e-11!29;UBERON:0001893!1.92e-11!29;UBERON:0007811!1.40e-09!86;UBERON:0000956!2.84e-08!21;UBERON:0001869!2.84e-08!21;UBERON:0000203!2.84e-08!21|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.06e-15,54;UBERON:0010371,1.19e-15,73;UBERON:0002346,6.70e-15,64;UBERON:0003075,6.70e-15,64;UBERON:0007284,6.70e-15,64;UBERON:0004121,8.96e-15,95;UBERON:0000924,8.96e-15,95;UBERON:0006601,8.96e-15,95;UBERON:0001049,9.13e-15,52;UBERON:0005068,9.13e-15,52;UBERON:0006241,9.13e-15,52;UBERON:0007135,9.13e-15,52;UBERON:0000955,3.91e-14,47;UBERON:0006238,3.91e-14,47;UBERON:0003056,4.19e-14,49;UBERON:0001017,1.12e-13,73;UBERON:0002616,1.23e-13,46;UBERON:0003080,2.95e-13,40;UBERON:0001016,8.53e-13,75;UBERON:0002780,1.25e-12,39;UBERON:0001890,1.25e-12,39;UBERON:0006240,1.25e-12,39;UBERON:0002020,8.09e-12,34;UBERON:0003528,1.92e-11,29;UBERON:0002791,1.92e-11,29;UBERON:0001893,1.92e-11,29;UBERON:0010314,4.06e-09,92;UBERON:0000956,2.84e-08,21;UBERON:0001869,2.84e-08,21;UBERON:0000203,2.84e-08,21|phase1_expression=30.1079832557013,29.6629096493457,25.0249581664245,35.9932411455128,31.0555352566735,22.1600638923695,17.9881733258555,20.6597317506522,25.764336153755,34.641549895655,20.8885921235116,25.5270908785077,27.3921167889929,25.0896554942523,14.6568295198892,14.3757439846776,17.4890469532037,19.4009231695316,23.3094537129756,17.3999757237192,19.3898701544439,14.695060777731,14.8883879809193,15.5192650109604,14.9116032693661,16.6527269593356,14.6459078694085,16.1603424514417,21.2826229791139,20.1624103807945,11.0865255327652,27.3063189587641,30.7532393792285,0,15.5979874665688,11.137721239019,11.8418226632174,31.808403936005,14.0640362014284,21.4644735029257,21.7645650571475,22.5405010036287,20.3914348273085,21.7801495097749,21.4919094185371,13.7660064121261,14.8654355426127,14.8257106338704,10.5449367712546,22.7482981916912,22.397827460058,11.5002051491977,24.3284778783718,21.7608642603403,22.8543783416875,25.2114247315228,23.7822755149168,21.1425557833751,37.6308617198852,35.4423956112262,38.6637156138769,15.9256930072492,12.450127145556,9.89889689009539,14.8329954385046,11.3676818391376,9.88680364710736,8.4528027170742,32.558538264862,33.616478644591,36.3862183137891,25.9942395807461,23.8538024227743,38.5846017527105,34.7919059796198,37.6879702510109,44.0463523997555,36.7739533685341,34.4078634493985,40.4890903331695,37.1439833025783,33.3384557156326,29.5933978941464,34.3285192119325,30.1012548120316,32.1145158166298,32.4607432221955,37.0934897192348,22.3392270332893,19.8753203080846,38.5519769973231,16.3480536626463,24.478968013479,9.71465744948071,16.2444104361917,19.7131830322828,20.0835520788405,26.2462696770209,17.6654483129951,15.9002808529653,21.9715734851622,20.5322363862909,35.6727335589304,35.5533351576666,8.01016851741492,9.88103475352884,6.57181778519218,17.8126852361734,32.6261733395436,27.3133535879278,20.6447538851702,24.9661692215956,22.3697032338377,21.8547828801303,30.4554751481475,24.8819850832757,24.9666917411718,25.4494868179045,30.9613693182456,27.0150639412173,19.4340536245146,22.7891368973554,33.550517019262,49.772735491963,49.2199761011619,22.9911349687732,22.8846887806308,14.9975682748352,21.7290088294941,48.981539085377,47.1225620903185,42.7224797183739,43.9775530086459,54.2116769540301,43.0121252238289,40.2358332408039,34.3198656175566,26.4986847399498,16.6797020566225,26.9365575534687,27.1951725792051,20.921091503446,27.3694437304131,29.5381442958002,36.6716730425657,35.7437279594731,29.9845518591132,38.8055056108524,29.9639510176651,33.0935640293684,29.9116911078713,29.5914238777226,35.8680951501021,35.521720985261,33.9540525073107,23.4860434845822,25.9818879305897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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:78287 | |||
|HGNC= | |||
|MCL_coexpression_id=873 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q80Y56 | |||
|association_with_transcript=-32bp_to_NM_030081,uc009cyv.1_5end | |||
|cluster_id=chr6:92164837..92164871,- | |||
|description=CAGE_peak_1_at_Zfyve20_5end | |||
|id=chr6:92164837..92164871,- | |||
|ontology_enrichment_celltype=CL:0000117!9.35e-09!23;CL:0000337!9.35e-09!23;CL:0000540!4.68e-07!33;CL:0000047!4.68e-07!33;CL:0000031!4.68e-07!33;CL:0000404!4.68e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,9.35e-09,23;CL:0000337,9.35e-09,23;CL:0000540,4.68e-07,33;CL:0000047,4.68e-07,33;CL:0000031,4.68e-07,33;CL:0000404,4.68e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!3.04e-16!63;UBERON:0000955!1.25e-15!50;UBERON:0006238!1.25e-15!50;UBERON:0002616!4.05e-15!49;UBERON:0001049!9.13e-15!52;UBERON:0005068!9.13e-15!52;UBERON:0006241!9.13e-15!52;UBERON:0007135!9.13e-15!52;UBERON:0003056!4.19e-14!49;UBERON:0004121!1.07e-13!102;UBERON:0000924!1.07e-13!102;UBERON:0006601!1.07e-13!102;UBERON:0001017!1.12e-13!73;UBERON:0005743!1.12e-13!73;UBERON:0002346!2.50e-13!71;UBERON:0003075!2.50e-13!71;UBERON:0007284!2.50e-13!71;UBERON:0003080!2.95e-13!40;UBERON:0000073!8.53e-13!75;UBERON:0001016!8.53e-13!75;UBERON:0002780!1.25e-12!39;UBERON:0001890!1.25e-12!39;UBERON:0006240!1.25e-12!39;UBERON:0002020!8.09e-12!34;UBERON:0000153!8.09e-12!94;UBERON:0002791!1.92e-11!29;UBERON:0003528!1.92e-11!29;UBERON:0001893!1.92e-11!29;UBERON:0007811!1.40e-09!86;UBERON:0000956!2.84e-08!21;UBERON:0001869!2.84e-08!21;UBERON:0000203!2.84e-08!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.06e-15,54;UBERON:0010371,1.19e-15,73;UBERON:0002346,6.70e-15,64;UBERON:0003075,6.70e-15,64;UBERON:0007284,6.70e-15,64;UBERON:0004121,8.96e-15,95;UBERON:0000924,8.96e-15,95;UBERON:0006601,8.96e-15,95;UBERON:0001049,9.13e-15,52;UBERON:0005068,9.13e-15,52;UBERON:0006241,9.13e-15,52;UBERON:0007135,9.13e-15,52;UBERON:0000955,3.91e-14,47;UBERON:0006238,3.91e-14,47;UBERON:0003056,4.19e-14,49;UBERON:0001017,1.12e-13,73;UBERON:0002616,1.23e-13,46;UBERON:0003080,2.95e-13,40;UBERON:0001016,8.53e-13,75;UBERON:0002780,1.25e-12,39;UBERON:0001890,1.25e-12,39;UBERON:0006240,1.25e-12,39;UBERON:0002020,8.09e-12,34;UBERON:0003528,1.92e-11,29;UBERON:0002791,1.92e-11,29;UBERON:0001893,1.92e-11,29;UBERON:0010314,4.06e-09,92;UBERON:0000956,2.84e-08,21;UBERON:0001869,2.84e-08,21;UBERON:0000203,2.84e-08,21 | |||
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| |||
|short_description=p1@Zfyve20 | |||
}} |
Revision as of 08:09, 6 August 2015
Short description: | p1@Zfyve20 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Zfyve20_5end |
Coexpression cluster: | MCL_coexpression_mm9:873 |
Association with transcript: | -32bp_to_NM_030081, uc009cyv.1_5end |
EntrezGene: | 78287 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 9.35e-09 | 23 |
neuroblast (sensu Vertebrata) | 9.35e-09 | 23 |
neuron | 4.68e-07 | 33 |
neuronal stem cell | 4.68e-07 | 33 |
neuroblast | 4.68e-07 | 33 |
electrically signaling cell | 4.68e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 1.06e-15 | 54 |
ecto-epithelium | 1.19e-15 | 73 |
neurectoderm | 6.70e-15 | 64 |
neural plate | 6.70e-15 | 64 |
presumptive neural plate | 6.70e-15 | 64 |
ectoderm-derived structure | 8.96e-15 | 95 |
ectoderm | 8.96e-15 | 95 |
presumptive ectoderm | 8.96e-15 | 95 |
neural tube | 9.13e-15 | 52 |
neural rod | 9.13e-15 | 52 |
future spinal cord | 9.13e-15 | 52 |
neural keel | 9.13e-15 | 52 |
brain | 3.91e-14 | 47 |
future brain | 3.91e-14 | 47 |
pre-chordal neural plate | 4.19e-14 | 49 |
central nervous system | 1.12e-13 | 73 |
regional part of brain | 1.23e-13 | 46 |
anterior neural tube | 2.95e-13 | 40 |
nervous system | 8.53e-13 | 75 |
regional part of forebrain | 1.25e-12 | 39 |
forebrain | 1.25e-12 | 39 |
future forebrain | 1.25e-12 | 39 |
gray matter | 8.09e-12 | 34 |
brain grey matter | 1.92e-11 | 29 |
regional part of telencephalon | 1.92e-11 | 29 |
telencephalon | 1.92e-11 | 29 |
structure with developmental contribution from neural crest | 4.06e-09 | 92 |
cerebral cortex | 2.84e-08 | 21 |
cerebral hemisphere | 2.84e-08 | 21 |
pallium | 2.84e-08 | 21 |