FFCP PHASE1:Mm9::chrX:54465221..54465232,+: Difference between revisions
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{{FFCP|EntrezGene=21947|HGNC=|MCL_coexpression_id=276|UniProt=P27548,Q0VEI3|association_with_transcript=-87bp_to_ENSMUST00000033466,NM_011616,uc009thb.1_5end|description=CAGE_peak_4_at_Cd40lg_5end|id=chrX:54465221..54465232,+|ontology_enrichment_celltype=CL:0000624!1.62e-24!8;CL:0000791!1.23e-21!9;CL:0000789!1.23e-21!9;CL:0002420!1.23e-21!9;CL:0002419!1.23e-21!9;CL:0000790!1.23e-21!9;CL:0000893!5.73e-19!6;CL:0002489!5.73e-19!6;CL:0000898!5.73e-19!6;CL:0000809!5.73e-19!6;CL:0000810!5.73e-19!6;CL:0000895!5.73e-19!6;CL:0000808!5.73e-19!6;CL:0000894!5.73e-19!6;CL:0000806!5.73e-19!6;CL:0000807!5.73e-19!6;CL:0000805!5.73e-19!6;CL:0002425!5.73e-19!6;CL:0002436!5.73e-19!6;CL:0002427!5.73e-19!6;CL:0002428!5.73e-19!6;CL:0002429!5.73e-19!6;CL:0002433!5.73e-19!6;CL:0002431!5.73e-19!6;CL:0002432!5.73e-19!6;CL:0000084!1.92e-17!11;CL:0000827!1.92e-17!11;CL:0000838!7.16e-16!12;CL:0000542!1.53e-14!13;CL:0000051!1.53e-14!13;CL:0000738!8.77e-11!17;CL:0002087!8.77e-11!17;CL:0002031!1.08e-10!25;CL:0000988!6.40e-08!32;CL:0002032!6.40e-08!32;CL:0000037!6.40e-08!32;CL:0000566!6.40e-08!32;CL:0000837!6.40e-08!32|ontology_enrichment_celltype_v019_2=CL:0000624,2.53e-77,8;CL:0000791,9.41e-69,9;CL:0000789,9.41e-69,9;CL:0002420,9.41e-69,9;CL:0002419,9.41e-69,9;CL:0000790,9.41e-69,9;CL:0000893,6.90e-59,6;CL:0002489,6.90e-59,6;CL:0000898,6.90e-59,6;CL:0000809,6.90e-59,6;CL:0000810,6.90e-59,6;CL:0000895,6.90e-59,6;CL:0000808,6.90e-59,6;CL:0000894,6.90e-59,6;CL:0000806,6.90e-59,6;CL:0000807,6.90e-59,6;CL:0000805,6.90e-59,6;CL:0002425,6.90e-59,6;CL:0002436,6.90e-59,6;CL:0002427,6.90e-59,6;CL:0002428,6.90e-59,6;CL:0002429,6.90e-59,6;CL:0002433,6.90e-59,6;CL:0002431,6.90e-59,6;CL:0002432,6.90e-59,6;CL:0000084,2.79e-56,11;CL:0000827,2.79e-56,11;CL:0000838,1.34e-51,12;CL:0000542,1.22e-47,13;CL:0000051,1.22e-47,13;CL:0000738,1.91e-36,17;CL:0002087,1.91e-36,17;CL:0002031,8.91e-25,25;CL:0000988,2.45e-19,32;CL:0002032,2.45e-19,32;CL:0000037,2.45e-19,32;CL:0000837,2.45e-19,32;CL:0002320,2.12e-13,46;CL:0000134,2.12e-13,46;CL:0000219,2.23e-11,54;CL:0000815,7.19e-11,1;CL:0000792,7.19e-11,1|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004177!4.07e-36!29;UBERON:0002370!1.12e-29!23;UBERON:0000974!1.12e-29!23;UBERON:0004807!1.12e-29!23;UBERON:0005058!1.12e-29!23;UBERON:0003351!1.12e-29!23;UBERON:0009113!1.12e-29!23;UBERON:0003295!1.12e-29!23;UBERON:0009722!1.12e-29!23;UBERON:0005562!1.12e-29!23;UBERON:0007690!1.12e-29!23;UBERON:0006562!2.73e-28!24;UBERON:0003408!2.73e-28!24;UBERON:0001557!2.73e-28!24;UBERON:0001042!2.73e-28!24;UBERON:0008814!2.73e-28!24;UBERON:0009145!2.73e-28!24;UBERON:0002193!1.33e-27!48;UBERON:0002390!6.96e-27!45;UBERON:0003061!6.96e-27!45;UBERON:0000072!9.45e-25!27;UBERON:0000065!1.50e-21!41;UBERON:0001004!6.13e-21!42;UBERON:0005057!1.21e-18!51;UBERON:0000063!2.81e-18!35;UBERON:0002405!2.24e-17!70;UBERON:0003081!8.29e-13!88;UBERON:0000077!4.51e-12!97;UBERON:0001041!9.65e-12!92;UBERON:0005911!4.09e-11!69;UBERON:0003929!2.38e-10!55;UBERON:0000064!1.31e-09!99;UBERON:0002368!3.37e-09!60;UBERON:0004921!4.40e-09!126;UBERON:0004185!4.40e-09!126;UBERON:0001007!7.37e-09!128;UBERON:0001555!7.37e-09!128;UBERON:0007026!7.37e-09!128;UBERON:0004119!1.21e-08!130;UBERON:0000925!1.21e-08!130;UBERON:0006595!1.21e-08!130;UBERON:0002530!3.16e-08!65;UBERON:0000490!4.74e-08!66;UBERON:0003104!1.27e-07!131;UBERON:0009142!1.27e-07!131;UBERON:0002106!1.81e-07!6;UBERON:0004457!1.81e-07!6;UBERON:0000042!1.81e-07!6;UBERON:0004854!1.81e-07!6;UBERON:0009034!1.81e-07!6;UBERON:0002095!1.81e-07!6;UBERON:0004782!1.81e-07!6;UBERON:0003281!1.81e-07!6;UBERON:0009664!1.81e-07!6;UBERON:0002296!1.81e-07!6;UBERON:0005602!1.81e-07!6;UBERON:0001179!1.81e-07!6;UBERON:0006293!1.81e-07!6;UBERON:0000949!4.25e-07!72|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.77e-15,23;UBERON:0000974,1.77e-15,23;UBERON:0004807,1.77e-15,23;UBERON:0005058,1.77e-15,23;UBERON:0003351,1.77e-15,23;UBERON:0009113,1.77e-15,23;UBERON:0003295,1.77e-15,23;UBERON:0009722,1.77e-15,23;UBERON:0005562,1.77e-15,23;UBERON:0007690,1.77e-15,23;UBERON:0006562,7.79e-15,24;UBERON:0003408,7.79e-15,24;UBERON:0001557,7.79e-15,24;UBERON:0001042,7.79e-15,24;UBERON:0008814,7.79e-15,24;UBERON:0009145,7.79e-15,24;UBERON:0002384,2.12e-13,46;UBERON:0000072,3.45e-13,27;UBERON:0004177,2.81e-12,29;UBERON:0005057,2.81e-12,29;UBERON:0000029,8.99e-11,1;UBERON:0001097,8.99e-11,1;UBERON:0003968,8.99e-11,1;UBERON:0001467,8.99e-11,1;UBERON:0000077,3.63e-10,35;UBERON:0002193,6.81e-10,48;UBERON:0002405,6.81e-10,48;UBERON:0007811,6.98e-10,36;UBERON:0000065,1.15e-08,41;UBERON:0001004,1.85e-08,42;UBERON:0000153,2.93e-08,43;UBERON:0002390,6.91e-08,45;UBERON:0003061,6.91e-08,45|phase1_expression=0,0,0,0,0,0,0,2.84071311571468,12.5301962714983,11.9372908424217,3.4243593645101,3.66951931378547,12.3264525550468,9.44140346125172,0,0,0,0.946386496074713,0,0.42438965179803,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45072428402269,0,0,0,0,0,0,0,0,0,0,0,0,0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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:21947 | |||
|HGNC= | |||
|MCL_coexpression_id=276 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:P27548,uniprot:Q0VEI3 | |||
|association_with_transcript=-87bp_to_ENSMUST00000033466,NM_011616,uc009thb.1_5end | |||
|cluster_id=chrX:54465221..54465232,+ | |||
|description=CAGE_peak_4_at_Cd40lg_5end | |||
|id=chrX:54465221..54465232,+ | |||
|ontology_enrichment_celltype=CL:0000624!1.62e-24!8;CL:0000791!1.23e-21!9;CL:0000789!1.23e-21!9;CL:0002420!1.23e-21!9;CL:0002419!1.23e-21!9;CL:0000790!1.23e-21!9;CL:0000893!5.73e-19!6;CL:0002489!5.73e-19!6;CL:0000898!5.73e-19!6;CL:0000809!5.73e-19!6;CL:0000810!5.73e-19!6;CL:0000895!5.73e-19!6;CL:0000808!5.73e-19!6;CL:0000894!5.73e-19!6;CL:0000806!5.73e-19!6;CL:0000807!5.73e-19!6;CL:0000805!5.73e-19!6;CL:0002425!5.73e-19!6;CL:0002436!5.73e-19!6;CL:0002427!5.73e-19!6;CL:0002428!5.73e-19!6;CL:0002429!5.73e-19!6;CL:0002433!5.73e-19!6;CL:0002431!5.73e-19!6;CL:0002432!5.73e-19!6;CL:0000084!1.92e-17!11;CL:0000827!1.92e-17!11;CL:0000838!7.16e-16!12;CL:0000542!1.53e-14!13;CL:0000051!1.53e-14!13;CL:0000738!8.77e-11!17;CL:0002087!8.77e-11!17;CL:0002031!1.08e-10!25;CL:0000988!6.40e-08!32;CL:0002032!6.40e-08!32;CL:0000037!6.40e-08!32;CL:0000566!6.40e-08!32;CL:0000837!6.40e-08!32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000624,2.53e-77,8;CL:0000791,9.41e-69,9;CL:0000789,9.41e-69,9;CL:0002420,9.41e-69,9;CL:0002419,9.41e-69,9;CL:0000790,9.41e-69,9;CL:0000893,6.90e-59,6;CL:0002489,6.90e-59,6;CL:0000898,6.90e-59,6;CL:0000809,6.90e-59,6;CL:0000810,6.90e-59,6;CL:0000895,6.90e-59,6;CL:0000808,6.90e-59,6;CL:0000894,6.90e-59,6;CL:0000806,6.90e-59,6;CL:0000807,6.90e-59,6;CL:0000805,6.90e-59,6;CL:0002425,6.90e-59,6;CL:0002436,6.90e-59,6;CL:0002427,6.90e-59,6;CL:0002428,6.90e-59,6;CL:0002429,6.90e-59,6;CL:0002433,6.90e-59,6;CL:0002431,6.90e-59,6;CL:0002432,6.90e-59,6;CL:0000084,2.79e-56,11;CL:0000827,2.79e-56,11;CL:0000838,1.34e-51,12;CL:0000542,1.22e-47,13;CL:0000051,1.22e-47,13;CL:0000738,1.91e-36,17;CL:0002087,1.91e-36,17;CL:0002031,8.91e-25,25;CL:0000988,2.45e-19,32;CL:0002032,2.45e-19,32;CL:0000037,2.45e-19,32;CL:0000837,2.45e-19,32;CL:0002320,2.12e-13,46;CL:0000134,2.12e-13,46;CL:0000219,2.23e-11,54;CL:0000815,7.19e-11,1;CL:0000792,7.19e-11,1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!4.07e-36!29;UBERON:0002370!1.12e-29!23;UBERON:0000974!1.12e-29!23;UBERON:0004807!1.12e-29!23;UBERON:0005058!1.12e-29!23;UBERON:0003351!1.12e-29!23;UBERON:0009113!1.12e-29!23;UBERON:0003295!1.12e-29!23;UBERON:0009722!1.12e-29!23;UBERON:0005562!1.12e-29!23;UBERON:0007690!1.12e-29!23;UBERON:0006562!2.73e-28!24;UBERON:0003408!2.73e-28!24;UBERON:0001557!2.73e-28!24;UBERON:0001042!2.73e-28!24;UBERON:0008814!2.73e-28!24;UBERON:0009145!2.73e-28!24;UBERON:0002193!1.33e-27!48;UBERON:0002390!6.96e-27!45;UBERON:0003061!6.96e-27!45;UBERON:0000072!9.45e-25!27;UBERON:0000065!1.50e-21!41;UBERON:0001004!6.13e-21!42;UBERON:0005057!1.21e-18!51;UBERON:0000063!2.81e-18!35;UBERON:0002405!2.24e-17!70;UBERON:0003081!8.29e-13!88;UBERON:0000077!4.51e-12!97;UBERON:0001041!9.65e-12!92;UBERON:0005911!4.09e-11!69;UBERON:0003929!2.38e-10!55;UBERON:0000064!1.31e-09!99;UBERON:0002368!3.37e-09!60;UBERON:0004921!4.40e-09!126;UBERON:0004185!4.40e-09!126;UBERON:0001007!7.37e-09!128;UBERON:0001555!7.37e-09!128;UBERON:0007026!7.37e-09!128;UBERON:0004119!1.21e-08!130;UBERON:0000925!1.21e-08!130;UBERON:0006595!1.21e-08!130;UBERON:0002530!3.16e-08!65;UBERON:0000490!4.74e-08!66;UBERON:0003104!1.27e-07!131;UBERON:0009142!1.27e-07!131;UBERON:0002106!1.81e-07!6;UBERON:0004457!1.81e-07!6;UBERON:0000042!1.81e-07!6;UBERON:0004854!1.81e-07!6;UBERON:0009034!1.81e-07!6;UBERON:0002095!1.81e-07!6;UBERON:0004782!1.81e-07!6;UBERON:0003281!1.81e-07!6;UBERON:0009664!1.81e-07!6;UBERON:0002296!1.81e-07!6;UBERON:0005602!1.81e-07!6;UBERON:0001179!1.81e-07!6;UBERON:0006293!1.81e-07!6;UBERON:0000949!4.25e-07!72 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.77e-15,23;UBERON:0000974,1.77e-15,23;UBERON:0004807,1.77e-15,23;UBERON:0005058,1.77e-15,23;UBERON:0003351,1.77e-15,23;UBERON:0009113,1.77e-15,23;UBERON:0003295,1.77e-15,23;UBERON:0009722,1.77e-15,23;UBERON:0005562,1.77e-15,23;UBERON:0007690,1.77e-15,23;UBERON:0006562,7.79e-15,24;UBERON:0003408,7.79e-15,24;UBERON:0001557,7.79e-15,24;UBERON:0001042,7.79e-15,24;UBERON:0008814,7.79e-15,24;UBERON:0009145,7.79e-15,24;UBERON:0002384,2.12e-13,46;UBERON:0000072,3.45e-13,27;UBERON:0004177,2.81e-12,29;UBERON:0005057,2.81e-12,29;UBERON:0000029,8.99e-11,1;UBERON:0001097,8.99e-11,1;UBERON:0003968,8.99e-11,1;UBERON:0001467,8.99e-11,1;UBERON:0000077,3.63e-10,35;UBERON:0002193,6.81e-10,48;UBERON:0002405,6.81e-10,48;UBERON:0007811,6.98e-10,36;UBERON:0000065,1.15e-08,41;UBERON:0001004,1.85e-08,42;UBERON:0000153,2.93e-08,43;UBERON:0002390,6.91e-08,45;UBERON:0003061,6.91e-08,45 | |||
|phase1_expression=0,0,0,0,0,0,0,2.84071311571468,12.5301962714983,11.9372908424217,3.4243593645101,3.66951931378547,12.3264525550468,9.44140346125172,0,0,0,0.946386496074713,0,0.42438965179803,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45072428402269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.8125651855302,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330418782983798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327726629431476,0.172684981865896,0.144649058581512,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.683483523191411,0,0,0.376736914009382,0.136694227721025,0.228778173206523,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.632022241256357,0,0,0,0,0.198681354781265,0.360586348559907,0.590758108698309,0.605798699688886,0.228620419965,0.302478555410522,0.38983152295901,0.481059208201647,0.701261413089414,0,0,0,0,0,0,0,0.214368379079066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115884325944855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p4@Cd40lg | |||
}} |
Revision as of 08:27, 6 August 2015
Short description: | p4@Cd40lg |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Cd40lg_5end |
Coexpression cluster: | MCL_coexpression_mm9:276 |
Association with transcript: | -87bp_to_ENSMUST00000033466, NM_011616, uc009thb.1_5end |
EntrezGene: | 21947 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
thymus | 1.77e-15 | 23 |
neck | 1.77e-15 | 23 |
respiratory system epithelium | 1.77e-15 | 23 |
hemolymphoid system gland | 1.77e-15 | 23 |
pharyngeal epithelium | 1.77e-15 | 23 |
thymic region | 1.77e-15 | 23 |
pharyngeal gland | 1.77e-15 | 23 |
entire pharyngeal arch endoderm | 1.77e-15 | 23 |
thymus primordium | 1.77e-15 | 23 |
early pharyngeal endoderm | 1.77e-15 | 23 |
pharynx | 7.79e-15 | 24 |
gland of gut | 7.79e-15 | 24 |
upper respiratory tract | 7.79e-15 | 24 |
chordate pharynx | 7.79e-15 | 24 |
pharyngeal arch system | 7.79e-15 | 24 |
pharyngeal region of foregut | 7.79e-15 | 24 |
connective tissue | 2.12e-13 | 46 |
segment of respiratory tract | 3.45e-13 | 27 |
hemopoietic organ | 2.81e-12 | 29 |
immune organ | 2.81e-12 | 29 |
lymph node | 8.99e-11 | 1 |
axillary lymph node | 8.99e-11 | 1 |
peripheral lymph node | 8.99e-11 | 1 |
shoulder | 8.99e-11 | 1 |
mixed endoderm/mesoderm-derived structure | 3.63e-10 | 35 |
hemolymphoid system | 6.81e-10 | 48 |
immune system | 6.81e-10 | 48 |
craniocervical region | 6.98e-10 | 36 |
respiratory tract | 1.15e-08 | 41 |
respiratory system | 1.85e-08 | 42 |
anterior region of body | 2.93e-08 | 43 |
hematopoietic system | 6.91e-08 | 45 |
blood island | 6.91e-08 | 45 |