FFCP PHASE1:Mm9::chr19:16207302..16207400,+: Difference between revisions
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{{FFCP|EntrezGene=14682|HGNC=|UniProt=P21279,Q3UHH5|association_with_transcript=0bp_to_ENSMUST00000025541,NM_008139,uc008gwt.1_5end|description=CAGE_peak_2_at_Gnaq_5end|id=chr19:16207302..16207400,+|ontology_enrichment_celltype=CL:0000540!1.57e-13!33;CL:0000047!1.57e-13!33;CL:0000031!1.57e-13!33;CL:0000404!1.57e-13!33;CL:0000393!1.02e-11!39;CL:0000211!1.02e-11!39;CL:0002319!6.30e-10!43;CL:0000221!7.63e-10!44;CL:0000133!7.63e-10!44;CL:0000055!8.34e-09!50;CL:0000117!9.55e-09!23;CL:0000337!9.55e-09!23|ontology_enrichment_celltype_v019_2=CL:0000540,1.56e-13,33;CL:0000047,1.56e-13,33;CL:0000031,1.56e-13,33;CL:0000404,1.56e-13,33;CL:0000393,1.01e-11,39;CL:0000211,1.01e-11,39;CL:0002319,6.61e-10,43;CL:0000221,8.00e-10,44;CL:0000133,8.00e-10,44;CL:0000117,9.50e-09,23;CL:0000337,9.50e-09,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!9.03e-19!73;UBERON:0005743!9.03e-19!73;UBERON:0000073!1.20e-18!75;UBERON:0001016!1.20e-18!75;UBERON:0004121!6.74e-16!102;UBERON:0000924!6.74e-16!102;UBERON:0006601!6.74e-16!102;UBERON:0002346!2.19e-14!71;UBERON:0003075!2.19e-14!71;UBERON:0007284!2.19e-14!71;UBERON:0002020!1.69e-13!34;UBERON:0001049!5.98e-13!52;UBERON:0005068!5.98e-13!52;UBERON:0006241!5.98e-13!52;UBERON:0007135!5.98e-13!52;UBERON:0000955!1.12e-10!50;UBERON:0006238!1.12e-10!50;UBERON:0002791!1.44e-10!29;UBERON:0003528!1.44e-10!29;UBERON:0001893!1.44e-10!29;UBERON:0000033!1.85e-10!63;UBERON:0002616!2.65e-10!49;UBERON:0003056!3.32e-10!49;UBERON:0003080!7.42e-10!40;UBERON:0002780!1.25e-09!39;UBERON:0001890!1.25e-09!39;UBERON:0006240!1.25e-09!39;UBERON:0000025!3.60e-08!114;UBERON:0004111!1.25e-07!122;UBERON:0000956!1.28e-07!21;UBERON:0001869!1.28e-07!21;UBERON:0000203!1.28e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.48e-19,73;UBERON:0001016,1.26e-18,75;UBERON:0004121,5.87e-16,95;UBERON:0000924,5.87e-16,95;UBERON:0006601,5.87e-16,95;UBERON:0002346,8.99e-15,64;UBERON:0003075,8.99e-15,64;UBERON:0007284,8.99e-15,64;UBERON:0002020,1.68e-13,34;UBERON:0010371,4.14e-13,73;UBERON:0000073,5.87e-13,54;UBERON:0001049,6.28e-13,52;UBERON:0005068,6.28e-13,52;UBERON:0006241,6.28e-13,52;UBERON:0007135,6.28e-13,52;UBERON:0010314,8.90e-11,92;UBERON:0003528,1.43e-10,29;UBERON:0002791,1.43e-10,29;UBERON:0001893,1.43e-10,29;UBERON:0000955,3.14e-10,47;UBERON:0006238,3.14e-10,47;UBERON:0003056,3.29e-10,49;UBERON:0003080,7.37e-10,40;UBERON:0002616,7.38e-10,46;UBERON:0002780,1.24e-09,39;UBERON:0001890,1.24e-09,39;UBERON:0006240,1.24e-09,39;UBERON:0000025,3.71e-08,114;UBERON:0000956,1.28e-07,21;UBERON:0001869,1.28e-07,21;UBERON:0000203,1.28e-07,21;UBERON:0004111,1.29e-07,122|phase1_expression=13.1322054625931,0.697950815278722,1.36499771816861,1.51232105653415,2.00358291978539,2.68606835059024,3.50418960893289,1.67860320474049,0.84473233291,0.70219357896598,0.513653904676515,0.957265907944037,0.171200729931206,0,0.999329285446988,1.82227740650843,0.699561878128147,2.36596624018678,2.33094537129756,2.97072756258621,8.75945888556019,1.78723712161594,2.61199789138935,0.799962113967033,0.68822784320151,1.14846392823004,1.29228598847722,1.29282739611533,0.760093677825496,0.756090389279792,0.221730510655305,5.71527606113668,1.84519436275371,15.8481681015439,0.288851619751275,0,0.204169356262369,1.25559489221072,0,1.57057123192139,1.17646297606203,0.683045484958446,0.971020706062307,12.9673722514845,11.4555932278051,8.25960384727567,0.782391344348039,10.247182349881,10.9843091367236,8.36048566019419,4.05960622713551,4.31257693094915,2.68452169692378,0.725362142011344,0,7.20326420900652,2.29226751951005,5.15672092277442,26.7057728334669,29.6234948392338,31.0577387718028,3.38844532069132,4.4464739805557,7.19919773825119,1.97773272513395,4.9733608046227,5.39280198933128,6.53171119046643,16.279269132431,12.2855403881839,13.4607975264884,17.7103610330358,21.4242484723065,11.6366259254206,12.4599112323707,7.35375029288017,9.91042928994498,12.6410464704336,12.9029487935245,27.5642341356105,29.1845583091687,21.3574481928272,8.37548997004143,13.5063026407603,14.9742282821274,30.0521157183141,32.8878582645928,30.5695091153493,10.8288456466453,8.01058537131927,24.0587525622393,8.60423876981386,7.47968467078526,2.15881276655127,2.59910566979068,1.79210754838934,3.23022166303029,11.759692257886,10.1316541795119,12.3668851078619,9.29566570526091,23.0987659345772,38.2207859559969,21.3320010945999,1.5154372870785,1.52015919285059,1.01104889002957,4.22480354960522,1.8125651855302,7.27366481417641,12.8379141806941,9.13396434936424,9.4552353874984,7.988299949289,11.4061045921634,7.28866229712118,4.94389935468748,7.22996784599558,4.42305275974937,10.3530783966342,5.30019644304944,3.39412677194655,3.72783522436244,12.5895742714965,12.5668024088073,1.27728527604296,2.87556298814209,4.19931911695385,2.1601938602421,12.8819949888148,17.3850229071078,19.6020789296068,17.0347833788431,26.8501230196847,13.0906468072523,14.2772311499627,20.6733908616142,6.22034853050465,6.06534620240819,3.99839526184301,7.5469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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:14682 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:P21279,uniprot:Q3UHH5 | |||
|association_with_transcript=0bp_to_ENSMUST00000025541,NM_008139,uc008gwt.1_5end | |||
|cluster_id=chr19:16207302..16207400,+ | |||
|description=CAGE_peak_2_at_Gnaq_5end | |||
|id=chr19:16207302..16207400,+ | |||
|ontology_enrichment_celltype=CL:0000540!1.57e-13!33;CL:0000047!1.57e-13!33;CL:0000031!1.57e-13!33;CL:0000404!1.57e-13!33;CL:0000393!1.02e-11!39;CL:0000211!1.02e-11!39;CL:0002319!6.30e-10!43;CL:0000221!7.63e-10!44;CL:0000133!7.63e-10!44;CL:0000055!8.34e-09!50;CL:0000117!9.55e-09!23;CL:0000337!9.55e-09!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.56e-13,33;CL:0000047,1.56e-13,33;CL:0000031,1.56e-13,33;CL:0000404,1.56e-13,33;CL:0000393,1.01e-11,39;CL:0000211,1.01e-11,39;CL:0002319,6.61e-10,43;CL:0000221,8.00e-10,44;CL:0000133,8.00e-10,44;CL:0000117,9.50e-09,23;CL:0000337,9.50e-09,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!9.03e-19!73;UBERON:0005743!9.03e-19!73;UBERON:0000073!1.20e-18!75;UBERON:0001016!1.20e-18!75;UBERON:0004121!6.74e-16!102;UBERON:0000924!6.74e-16!102;UBERON:0006601!6.74e-16!102;UBERON:0002346!2.19e-14!71;UBERON:0003075!2.19e-14!71;UBERON:0007284!2.19e-14!71;UBERON:0002020!1.69e-13!34;UBERON:0001049!5.98e-13!52;UBERON:0005068!5.98e-13!52;UBERON:0006241!5.98e-13!52;UBERON:0007135!5.98e-13!52;UBERON:0000955!1.12e-10!50;UBERON:0006238!1.12e-10!50;UBERON:0002791!1.44e-10!29;UBERON:0003528!1.44e-10!29;UBERON:0001893!1.44e-10!29;UBERON:0000033!1.85e-10!63;UBERON:0002616!2.65e-10!49;UBERON:0003056!3.32e-10!49;UBERON:0003080!7.42e-10!40;UBERON:0002780!1.25e-09!39;UBERON:0001890!1.25e-09!39;UBERON:0006240!1.25e-09!39;UBERON:0000025!3.60e-08!114;UBERON:0004111!1.25e-07!122;UBERON:0000956!1.28e-07!21;UBERON:0001869!1.28e-07!21;UBERON:0000203!1.28e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.48e-19,73;UBERON:0001016,1.26e-18,75;UBERON:0004121,5.87e-16,95;UBERON:0000924,5.87e-16,95;UBERON:0006601,5.87e-16,95;UBERON:0002346,8.99e-15,64;UBERON:0003075,8.99e-15,64;UBERON:0007284,8.99e-15,64;UBERON:0002020,1.68e-13,34;UBERON:0010371,4.14e-13,73;UBERON:0000073,5.87e-13,54;UBERON:0001049,6.28e-13,52;UBERON:0005068,6.28e-13,52;UBERON:0006241,6.28e-13,52;UBERON:0007135,6.28e-13,52;UBERON:0010314,8.90e-11,92;UBERON:0003528,1.43e-10,29;UBERON:0002791,1.43e-10,29;UBERON:0001893,1.43e-10,29;UBERON:0000955,3.14e-10,47;UBERON:0006238,3.14e-10,47;UBERON:0003056,3.29e-10,49;UBERON:0003080,7.37e-10,40;UBERON:0002616,7.38e-10,46;UBERON:0002780,1.24e-09,39;UBERON:0001890,1.24e-09,39;UBERON:0006240,1.24e-09,39;UBERON:0000025,3.71e-08,114;UBERON:0000956,1.28e-07,21;UBERON:0001869,1.28e-07,21;UBERON:0000203,1.28e-07,21;UBERON:0004111,1.29e-07,122 | |||
|phase1_expression=13.1322054625931,0.697950815278722,1.36499771816861,1.51232105653415,2.00358291978539,2.68606835059024,3.50418960893289,1.67860320474049,0.84473233291,0.70219357896598,0.513653904676515,0.957265907944037,0.171200729931206,0,0.999329285446988,1.82227740650843,0.699561878128147,2.36596624018678,2.33094537129756,2.97072756258621,8.75945888556019,1.78723712161594,2.61199789138935,0.799962113967033,0.68822784320151,1.14846392823004,1.29228598847722,1.29282739611533,0.760093677825496,0.756090389279792,0.221730510655305,5.71527606113668,1.84519436275371,15.8481681015439,0.288851619751275,0,0.204169356262369,1.25559489221072,0,1.57057123192139,1.17646297606203,0.683045484958446,0.971020706062307,12.9673722514845,11.4555932278051,8.25960384727567,0.782391344348039,10.247182349881,10.9843091367236,8.36048566019419,4.05960622713551,4.31257693094915,2.68452169692378,0.725362142011344,0,7.20326420900652,2.29226751951005,5.15672092277442,26.7057728334669,29.6234948392338,31.0577387718028,3.38844532069132,4.4464739805557,7.19919773825119,1.97773272513395,4.9733608046227,5.39280198933128,6.53171119046643,16.279269132431,12.2855403881839,13.4607975264884,17.7103610330358,21.4242484723065,11.6366259254206,12.4599112323707,7.35375029288017,9.91042928994498,12.6410464704336,12.9029487935245,27.5642341356105,29.1845583091687,21.3574481928272,8.37548997004143,13.5063026407603,14.9742282821274,30.0521157183141,32.8878582645928,30.5695091153493,10.8288456466453,8.01058537131927,24.0587525622393,8.60423876981386,7.47968467078526,2.15881276655127,2.59910566979068,1.79210754838934,3.23022166303029,11.759692257886,10.1316541795119,12.3668851078619,9.29566570526091,23.0987659345772,38.2207859559969,21.3320010945999,1.5154372870785,1.52015919285059,1.01104889002957,4.22480354960522,1.8125651855302,7.27366481417641,12.8379141806941,9.13396434936424,9.4552353874984,7.988299949289,11.4061045921634,7.28866229712118,4.94389935468748,7.22996784599558,4.42305275974937,10.3530783966342,5.30019644304944,3.39412677194655,3.72783522436244,12.5895742714965,12.5668024088073,1.27728527604296,2.87556298814209,4.19931911695385,2.1601938602421,12.8819949888148,17.3850229071078,19.6020789296068,17.0347833788431,26.8501230196847,13.0906468072523,14.2772311499627,20.6733908616142,6.22034853050465,6.06534620240819,3.99839526184301,7.54698569183682,7.81667155073808,10.4436035287103,14.6183673300644,17.6214532801939,14.476850392188,21.3639931996182,6.72628763921441,6.89817577385095,9.64441008855878,11.6127741948206,7.89104636739269,10.2877482213471,6.268538997399,8.23128545631774,12.9372273432021,2.1066395619397,0.772043721344145,1.13665399758237,6.00664740352955,7.27030785941398,5.40186184383045,7.33908680314152,5.70616272067471,6.47921874126989,4.18561100550734,6.17028823219124,7.82327793860036,10.0381508447223,8.86504306027114,10.133601193232,8.62579925809461,7.90380415047782,7.91817870686193,23.7627641877464,33.2381897985089,1.32167513193519,0.793351699990633,14.9301775374664,14.6309103272076,13.2733485161756,8.87407508342707,7.56085349072559,9.3210556795154,3.32170343081158,11.3642278759568,11.8127548136127,10.7436494902221,8.57841983324129,9.88701349519644,4.97117514711797,4.38110801159608,6.82804443431094,11.8818453114118,6.76246414038483,8.75700709734851,9.30971938404604,14.5181147172959,15.4297150583188,7.23289725100051,5.33795674660674,5.55287237648102,3.55743152504579,4.33797274861845,1.76903095601883,1.57403478669398,1.62288097110802,1.20588579876208,3.56476192493988,4.02774592431135,3.40483976227574,4.11842119782122,11.5014565221884,9.67566463938109,5.92871578917665,4.79899868099512,3.94674309748207,3.85954817090694,15.888774354328,10.6115190591471,12.0594082567099,9.33597971763535,9.38760993154008,12.0604505358107,13.8065311713888,22.4403695036469,24.5910824805658,23.6967217924189,36.674596791222,18.5165545628784,15.8870183316624,21.4080606700637,1.50791283939272,5.4390568381871,4.91764273019036,3.86311444826625,12.6834966090356,13.1277088983268,9.67216177722385,7.06918596172244,15.1443945319803,20.6932534477218,23.6965737506079,17.2057534525837,22.7254647564042,18.1168979704853,14.9779959619711,29.8100975069538,28.0654322342032,15.4234231882467,12.4907274983276,9.97167380536629,22.6412873501471,23.4257574621,1.32745138339963,5.09839335925461,6.95344181018927,5.46954731292105,2.65771703592696,9.53048958626175,9.8202751403924,8.72480950746013,8.19943970284859,5.05658812697306,6.32511651449993,7.21948802737308,4.76615448055303,7.74262704334634,6.07985813778946,10.0738406464848,12.4138163549592,11.7723419617367,11.5184314421485,4.56697423671899,6.33613611772018,3.81297727554876,5.29268155331909,5.11147384118588,9.68786560175433,8.80568703951075,7.63983001620073,6.40149509005739,5.24665505933731,15.5757253688828,1.53783792718067,13.002372681683,7.9633646768976,2.82552685507037,2.46049609897845,0.915112692826091,5.94924504978494,5.45810664062266,3.86959926652387,4.77335309007557,10.2809197913869,14.2323626988794,13.7166782843688,12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| |||
|short_description=p2@Gnaq | |||
}} |
Revision as of 08:43, 6 August 2015
Short description: | p2@Gnaq |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Gnaq_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000025541, NM_008139, uc008gwt.1_5end |
EntrezGene: | 14682 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.56e-13 | 33 |
neuronal stem cell | 1.56e-13 | 33 |
neuroblast | 1.56e-13 | 33 |
electrically signaling cell | 1.56e-13 | 33 |
electrically responsive cell | 1.01e-11 | 39 |
electrically active cell | 1.01e-11 | 39 |
neural cell | 6.61e-10 | 43 |
ectodermal cell | 8.00e-10 | 44 |
neurectodermal cell | 8.00e-10 | 44 |
CNS neuron (sensu Vertebrata) | 9.50e-09 | 23 |
neuroblast (sensu Vertebrata) | 9.50e-09 | 23 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 9.48e-19 | 73 |
nervous system | 1.26e-18 | 75 |
ectoderm-derived structure | 5.87e-16 | 95 |
ectoderm | 5.87e-16 | 95 |
presumptive ectoderm | 5.87e-16 | 95 |
neurectoderm | 8.99e-15 | 64 |
neural plate | 8.99e-15 | 64 |
presumptive neural plate | 8.99e-15 | 64 |
gray matter | 1.68e-13 | 34 |
ecto-epithelium | 4.14e-13 | 73 |
regional part of nervous system | 5.87e-13 | 54 |
neural tube | 6.28e-13 | 52 |
neural rod | 6.28e-13 | 52 |
future spinal cord | 6.28e-13 | 52 |
neural keel | 6.28e-13 | 52 |
structure with developmental contribution from neural crest | 8.90e-11 | 92 |
brain grey matter | 1.43e-10 | 29 |
regional part of telencephalon | 1.43e-10 | 29 |
telencephalon | 1.43e-10 | 29 |
brain | 3.14e-10 | 47 |
future brain | 3.14e-10 | 47 |
pre-chordal neural plate | 3.29e-10 | 49 |
anterior neural tube | 7.37e-10 | 40 |
regional part of brain | 7.38e-10 | 46 |
regional part of forebrain | 1.24e-09 | 39 |
forebrain | 1.24e-09 | 39 |
future forebrain | 1.24e-09 | 39 |
tube | 3.71e-08 | 114 |
cerebral cortex | 1.28e-07 | 21 |
cerebral hemisphere | 1.28e-07 | 21 |
pallium | 1.28e-07 | 21 |
anatomical conduit | 1.29e-07 | 122 |