FFCP PHASE1:Mm9::chrX:97925175..97925185,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=71584|HGNC=|MCL_coexpression_id=3765|UniProt=A2BEE8,Q9ESM6|association_with_transcript=0bp_to_NM_023608,uc009twi.2_5end|description=CAGE_peak_6_at_Gdpd2_5end|id=chrX:97925175..97925185,+|ontology_enrichment_celltype=CL:0002453!5.88e-07!8|ontology_enrichment_celltype_v019_2=CL:0002605,8.81e-10,2;CL:0002604,8.81e-10,2;CL:0002453,4.12e-09,8;CL:0000333,2.53e-07,10;CL:0000095,2.53e-07,10;CL:0000243,2.53e-07,10;CL:0000123,2.53e-07,10;CL:0000125,2.53e-07,10;CL:0000030,2.53e-07,10;CL:0000339,2.53e-07,10;CL:0000128,3.07e-07,6;CL:0000126,3.07e-07,6;CL:0000127,3.07e-07,6;CL:0000192,5.92e-07,3;CL:0000359,5.92e-07,3;CL:0002539,5.92e-07,3;CL:0000514,5.92e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002106!1.55e-08!6;UBERON:0004457!1.55e-08!6;UBERON:0000042!1.55e-08!6;UBERON:0004854!1.55e-08!6;UBERON:0009034!1.55e-08!6;UBERON:0002095!1.55e-08!6;UBERON:0004782!1.55e-08!6;UBERON:0003281!1.55e-08!6;UBERON:0009664!1.55e-08!6;UBERON:0002296!1.55e-08!6;UBERON:0005602!1.55e-08!6;UBERON:0001179!1.55e-08!6;UBERON:0006293!1.55e-08!6;UBERON:0003887!1.50e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0002106,2.73e-29,6;UBERON:0004457,2.73e-29,6;UBERON:0000042,2.73e-29,6;UBERON:0004854,2.73e-29,6;UBERON:0009034,2.73e-29,6;UBERON:0002095,2.73e-29,6;UBERON:0004782,2.73e-29,6;UBERON:0003281,2.73e-29,6;UBERON:0009664,2.73e-29,6;UBERON:0002296,2.73e-29,6;UBERON:0005602,2.73e-29,6;UBERON:0001179,2.73e-29,6;UBERON:0006293,2.73e-29,6;UBERON:0003887,3.46e-23,10;UBERON:0000945,1.03e-10,16;UBERON:0010039,1.03e-10,16;UBERON:0004872,1.51e-10,33;UBERON:0002075,6.10e-09,19;UBERON:0003081,1.44e-08,87;UBERON:0004177,1.33e-07,29;UBERON:0005057,1.33e-07,29;UBERON:0002390,1.86e-07,45;UBERON:0003061,1.86e-07,45;UBERON:0004923,5.72e-07,24;UBERON:0001135,5.92e-07,3;UBERON:0004237,5.92e-07,3;UBERON:0004695,5.92e-07,3;UBERON:0002111,5.92e-07,3;UBERON:0004178,5.92e-07,3;UBERON:0002193,6.54e-07,48;UBERON:0002405,6.54e-07,48|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.999329285446988,0,0,0.157731082679119,0,0,0.340173160604279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00717454380462,0.811015449756117,2.38610777810186,0,0.872100625521786,1.09843091367236,1.36100929351998,0.419959264876088,1.43752564364972,0,0,0,0,0,0,0.606949382578793,0,0.633831403506179,0,0,0,0,0,0.299600110518405,1.15265491596466,0,0,0,0.571301968807607,0.662605622854841,0,0,0,0,0.383062014255563,0.46081959976873,0,0,0,0.279182999001381,0,0,0.294628585473668,0.142371680799103,0,0,0.0755715601067855,0,0,0,0,0,0,0.140444420131752,0.170430322578058,0.259786004602869,0.35333957451034,0.14084341977668,0,2.54805239706646,0,0,0,0,0.34255163915718,0,0,0,0,0,0,0.117588707135705,0,0,0,4.42305275974937,0.485300549842228,0.883366073841574,2.42437626567611,0,0,0,0,0,0,0,0.149790639404823,0,0,0.347648640384553,0,0.20778804455956,0,0.203678727700633,1.24406970610093,0,0,0,0,0,0,0.0680364991513279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210289948564127,0.102904612379284,0,0,0,0,0,0,0,0,0,0.164698954724011,0.251335208800269,0.198956472041151,0,0,0,0,0,0.114248512609729,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.312037673114561,0,0,0,0.184753190166605,0,0,0,0,0.167506257441816,1.6663054862021,2.34160377429359,0,0.221464689648775,0.159454768657487,0.491589944147214,0.172684981865896,0.144649058581512,1.50791283939272,0,0,0,0,0,0,0.252470927204373,0,0,0,0,0,0,0,0.292255857911312,0,0,0.851640511249612,0.178065603667255,0,0.164970122972535,0,0,0,0,0.295301892880773,0,0,0,0,0.316036757935816,0,0,0,0,0,0,0,0,0,0,0.23467170806371,0,0,0.16488625294148,0,0.0603129249281559,0,0,0,0,3.93003025835061,3.714963623338,14.8155621895769,2.26042148405629,4.92099219795691,3.43167259809784,0,0,0,0,0,0,0,0,0.436725127492355,0.134864346384821,0.247960367176008,0.26175594198403,0,0,0,0.149516546043979,0,0,0.129159823477731,0,0,0.13020438484395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.45032120322422,0,0,0,0,0,0,0,0,0.222246727801615,0.206035057238894,0,0,0.25347929989024,0,0.0936415074698824,0.0640251524048693,0.17230640686684,0,0,0,0,0,0,0,0.476872379894642,0.145346416632329,0,0,0.182927972872773,0,0,0,0.237270036248348,0,0,0,0,0,0.233931608445408,0.214871054048298,0,0,0.231867835620421|short_description=p6@Gdpd2}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:71584 | |||
|HGNC= | |||
|MCL_coexpression_id=3765 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:A2BEE8,uniprot:Q9ESM6 | |||
|association_with_transcript=0bp_to_NM_023608,uc009twi.2_5end | |||
|cluster_id=chrX:97925175..97925185,+ | |||
|description=CAGE_peak_6_at_Gdpd2_5end | |||
|id=chrX:97925175..97925185,+ | |||
|ontology_enrichment_celltype=CL:0002453!5.88e-07!8 | |||
|ontology_enrichment_celltype_v019_2=CL:0002605,8.81e-10,2;CL:0002604,8.81e-10,2;CL:0002453,4.12e-09,8;CL:0000333,2.53e-07,10;CL:0000095,2.53e-07,10;CL:0000243,2.53e-07,10;CL:0000123,2.53e-07,10;CL:0000125,2.53e-07,10;CL:0000030,2.53e-07,10;CL:0000339,2.53e-07,10;CL:0000128,3.07e-07,6;CL:0000126,3.07e-07,6;CL:0000127,3.07e-07,6;CL:0000192,5.92e-07,3;CL:0000359,5.92e-07,3;CL:0002539,5.92e-07,3;CL:0000514,5.92e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002106!1.55e-08!6;UBERON:0004457!1.55e-08!6;UBERON:0000042!1.55e-08!6;UBERON:0004854!1.55e-08!6;UBERON:0009034!1.55e-08!6;UBERON:0002095!1.55e-08!6;UBERON:0004782!1.55e-08!6;UBERON:0003281!1.55e-08!6;UBERON:0009664!1.55e-08!6;UBERON:0002296!1.55e-08!6;UBERON:0005602!1.55e-08!6;UBERON:0001179!1.55e-08!6;UBERON:0006293!1.55e-08!6;UBERON:0003887!1.50e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,2.73e-29,6;UBERON:0004457,2.73e-29,6;UBERON:0000042,2.73e-29,6;UBERON:0004854,2.73e-29,6;UBERON:0009034,2.73e-29,6;UBERON:0002095,2.73e-29,6;UBERON:0004782,2.73e-29,6;UBERON:0003281,2.73e-29,6;UBERON:0009664,2.73e-29,6;UBERON:0002296,2.73e-29,6;UBERON:0005602,2.73e-29,6;UBERON:0001179,2.73e-29,6;UBERON:0006293,2.73e-29,6;UBERON:0003887,3.46e-23,10;UBERON:0000945,1.03e-10,16;UBERON:0010039,1.03e-10,16;UBERON:0004872,1.51e-10,33;UBERON:0002075,6.10e-09,19;UBERON:0003081,1.44e-08,87;UBERON:0004177,1.33e-07,29;UBERON:0005057,1.33e-07,29;UBERON:0002390,1.86e-07,45;UBERON:0003061,1.86e-07,45;UBERON:0004923,5.72e-07,24;UBERON:0001135,5.92e-07,3;UBERON:0004237,5.92e-07,3;UBERON:0004695,5.92e-07,3;UBERON:0002111,5.92e-07,3;UBERON:0004178,5.92e-07,3;UBERON:0002193,6.54e-07,48;UBERON:0002405,6.54e-07,48 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.999329285446988,0,0,0.157731082679119,0,0,0.340173160604279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00717454380462,0.811015449756117,2.38610777810186,0,0.872100625521786,1.09843091367236,1.36100929351998,0.419959264876088,1.43752564364972,0,0,0,0,0,0,0.606949382578793,0,0.633831403506179,0,0,0,0,0,0.299600110518405,1.15265491596466,0,0,0,0.571301968807607,0.662605622854841,0,0,0,0,0.383062014255563,0.46081959976873,0,0,0,0.279182999001381,0,0,0.294628585473668,0.142371680799103,0,0,0.0755715601067855,0,0,0,0,0,0,0.140444420131752,0.170430322578058,0.259786004602869,0.35333957451034,0.14084341977668,0,2.54805239706646,0,0,0,0,0.34255163915718,0,0,0,0,0,0,0.117588707135705,0,0,0,4.42305275974937,0.485300549842228,0.883366073841574,2.42437626567611,0,0,0,0,0,0,0,0.149790639404823,0,0,0.347648640384553,0,0.20778804455956,0,0.203678727700633,1.24406970610093,0,0,0,0,0,0,0.0680364991513279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210289948564127,0.102904612379284,0,0,0,0,0,0,0,0,0,0.164698954724011,0.251335208800269,0.198956472041151,0,0,0,0,0,0.114248512609729,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.312037673114561,0,0,0,0.184753190166605,0,0,0,0,0.167506257441816,1.6663054862021,2.34160377429359,0,0.221464689648775,0.159454768657487,0.491589944147214,0.172684981865896,0.144649058581512,1.50791283939272,0,0,0,0,0,0,0.252470927204373,0,0,0,0,0,0,0,0.292255857911312,0,0,0.851640511249612,0.178065603667255,0,0.164970122972535,0,0,0,0,0.295301892880773,0,0,0,0,0.316036757935816,0,0,0,0,0,0,0,0,0,0,0.23467170806371,0,0,0.16488625294148,0,0.0603129249281559,0,0,0,0,3.93003025835061,3.714963623338,14.8155621895769,2.26042148405629,4.92099219795691,3.43167259809784,0,0,0,0,0,0,0,0,0.436725127492355,0.134864346384821,0.247960367176008,0.26175594198403,0,0,0,0.149516546043979,0,0,0.129159823477731,0,0,0.13020438484395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.45032120322422,0,0,0,0,0,0,0,0,0.222246727801615,0.206035057238894,0,0,0.25347929989024,0,0.0936415074698824,0.0640251524048693,0.17230640686684,0,0,0,0,0,0,0,0.476872379894642,0.145346416632329,0,0,0.182927972872773,0,0,0,0.237270036248348,0,0,0,0,0,0.233931608445408,0.214871054048298,0,0,0.231867835620421 | |||
|short_description=p6@Gdpd2 | |||
}} |
Revision as of 11:05, 6 August 2015
Short description: | p6@Gdpd2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_Gdpd2_5end |
Coexpression cluster: | MCL_coexpression_mm9:3765 |
Association with transcript: | 0bp_to_NM_023608, uc009twi.2_5end |
EntrezGene: | 71584 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebral cortex | 8.81e-10 | 2 |
astrocyte of the hippocampus | 8.81e-10 | 2 |
oligodendrocyte precursor cell | 4.12e-09 | 8 |
migratory neural crest cell | 2.53e-07 | 10 |
neuron associated cell | 2.53e-07 | 10 |
glial cell (sensu Vertebrata) | 2.53e-07 | 10 |
neuron associated cell (sensu Vertebrata) | 2.53e-07 | 10 |
glial cell | 2.53e-07 | 10 |
glioblast | 2.53e-07 | 10 |
glioblast (sensu Vertebrata) | 2.53e-07 | 10 |
oligodendrocyte | 3.07e-07 | 6 |
macroglial cell | 3.07e-07 | 6 |
astrocyte | 3.07e-07 | 6 |
smooth muscle cell | 5.92e-07 | 3 |
vascular associated smooth muscle cell | 5.92e-07 | 3 |
aortic smooth muscle cell | 5.92e-07 | 3 |
smooth muscle myoblast | 5.92e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
spleen | 2.73e-29 | 6 |
cavity lining | 2.73e-29 | 6 |
serous membrane | 2.73e-29 | 6 |
gastrointestinal system mesentery | 2.73e-29 | 6 |
stomach region | 2.73e-29 | 6 |
mesentery | 2.73e-29 | 6 |
gastrointestinal system serosa | 2.73e-29 | 6 |
mesentery of stomach | 2.73e-29 | 6 |
gut mesentery | 2.73e-29 | 6 |
dorsal mesentery | 2.73e-29 | 6 |
dorsal mesogastrium | 2.73e-29 | 6 |
peritoneal cavity | 2.73e-29 | 6 |
spleen primordium | 2.73e-29 | 6 |
intraembryonic coelom | 3.46e-23 | 10 |
stomach | 1.03e-10 | 16 |
food storage organ | 1.03e-10 | 16 |
splanchnic layer of lateral plate mesoderm | 1.51e-10 | 33 |
viscus | 6.10e-09 | 19 |
lateral plate mesoderm | 1.44e-08 | 87 |
hemopoietic organ | 1.33e-07 | 29 |
immune organ | 1.33e-07 | 29 |
hematopoietic system | 1.86e-07 | 45 |
blood island | 1.86e-07 | 45 |
organ component layer | 5.72e-07 | 24 |
smooth muscle tissue | 5.92e-07 | 3 |
blood vessel smooth muscle | 5.92e-07 | 3 |
arterial system smooth muscle | 5.92e-07 | 3 |
artery smooth muscle tissue | 5.92e-07 | 3 |
aorta smooth muscle tissue | 5.92e-07 | 3 |
hemolymphoid system | 6.54e-07 | 48 |
immune system | 6.54e-07 | 48 |