FFCP PHASE1:Hg19::chr8:119633207..119633221,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=552860 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=30937 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-18bp_to_NR_038210_5end | |||
|cluster_id=chr8:119633207..119633221,+ | |||
|description=CAGE_peak_1_at_SAMD12-AS1_5end | |||
|id=chr8:119633207..119633221,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000313;3.28e-23;1!CL:0000159;2.59e-12;2!CL:0000945;5.28e-09;24!CL:0002586;1.21e-08;3!CL:0000083;8.61e-07;4!CL:0000149;8.61e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000313,2.62e-23,1;CL:0000159,2.32e-12,2;CL:0000945,5.00e-09,24;CL:0000826,5.00e-09,24;CL:0002586,1.30e-08,3;CL:0000083,8.61e-07,4;CL:0000149,9.11e-07,4 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!8.53e-09!106;DOID:0050687!1.86e-07!143 | |||
|ontology_enrichment_disease_v019=DOID:2152;3.28e-23;1!DOID:4074;2.59e-12;2!DOID:4905;2.59e-12;2!DOID:3493;2.59e-12;2!DOID:3498;2.59e-12;2!DOID:1793;8.61e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:2152,2.62e-23,1;DOID:4074,2.59e-12,2;DOID:4905,2.59e-12,2;DOID:3498,2.59e-12,2;DOID:3493,3.62e-12,2;DOID:1793,8.61e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0002294!1.42e-08!7;UBERON:0001173!1.42e-08!7;UBERON:0004912!1.42e-08!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0004911;3.28e-23;1!UBERON:0004909;2.59e-12;2!UBERON:0002106;1.21e-08;3!UBERON:0001781;1.21e-08;3!UBERON:0001782;1.21e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004911,2.62e-23,1;UBERON:0004909,2.32e-12,2;UBERON:0002106,9.66e-09,3;UBERON:0004854,9.66e-09,3;UBERON:0009034,9.66e-09,3;UBERON:0002095,9.66e-09,3;UBERON:0004782,9.66e-09,3;UBERON:0003281,9.66e-09,3;UBERON:0009664,9.66e-09,3;UBERON:0002296,9.66e-09,3;UBERON:0005602,9.66e-09,3;UBERON:0001179,9.66e-09,3;UBERON:0006293,9.66e-09,3;UBERON:0001782,1.30e-08,3;UBERON:0005424,1.30e-08,3;UBERON:0001781,9.11e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.36881557818649,2.54511827294832,1.73163718890094,0,0.383829398097213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0.587237189370939,0,0,0,0.526768169550154,0,0,0,0.501559486172034,0,0,0,0.111410456885174,0,0.886135578334485,0,0.640456598628376,0,0.657751618414705,0,0.289803085735052,0.14828656316206,0,0,0.226618685395132,0,0,0,0.318565414324097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241011029883482,0,0,0.474541238222193,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201057944823262,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0.219259876645935,0,0,0.328014645699706,1.30151357865721,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0898683511473268,0.537063524026827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32681539055697,0,0,0,0,0.0897576444097721,0,0,0,0,0,0,0,0,0,0,0,0,0,0.652931232636591,0,0,0,0,0,0,0,0,0,0,0,0,1.36965233252463,0,0,0,0,0,0.751617097072463,0.414752765588989,0,0,0,0,0.284609546029793,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0.0633107959558787,0.586654148204409,0.0801588202515337,0,0,0,0,0,0.14405479798815,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0.13223260174269,0,0,0,0.157204305099666,0,0,0.197611631897944,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.398095888698616,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0,0.219284049578707,0.176689145945881,0,0,0.256241518587947,0,0,0,0.194860308839388,0,0,0,0,0.211312123358627,0,0,0.861074898304078,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0691572524642179,0,0,0.0981477185010256,0,0,0,0,0,0,0,0.20170506870352,0,0,0,0.443568258651136,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135939465953663,0.0657727735628491,0,0,0,0,0,0,0,0.47775168788705,0,0,0,0,0,0.414432328326074,0,0,0,0,0,0,0.4582137370881,0,0,1.56597604516909,0.785201868921944,1.21917924982269,0,0,0,0,0,0,0,0,0,0.150962843566674,0.0771741581079447,0.218559560503957,0,0,0,0,0,0,0,0,0,1.99882311849858,1.2498775702396,0.352894871715692,0.160482733378337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26721740526556,0,0,0.606229585745915,0,0,0,0,0,0,0,0,0.190941474834495,0,0.435433495793923,0,0,0.0717222053926763,0,0.0814032686109745,0.106727345877715,0,0.0898252021065869,0,0,0,0,0,0 | |||
|short_description=p1@SAMD12-AS1 | |||
}} |
Latest revision as of 20:37, 15 September 2015
Short description: | p1@SAMD12-AS1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SAMD12-AS1_5end |
Coexpression cluster: | NA |
Association with transcript: | -18bp_to_NR_038210_5end |
EntrezGene: | SAMD12-AS1 |
HGNC: | 30937 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
serous secreting cell | 2.62e-23 | 1 |
seromucus secreting cell | 2.32e-12 | 2 |
lymphocyte of B lineage | 5.00e-09 | 24 |
pro-B cell | 5.00e-09 | 24 |
retinal pigment epithelial cell | 1.30e-08 | 3 |
epithelial cell of pancreas | 8.61e-07 | 4 |
visual pigment cell | 9.11e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
epithelium of female gonad | 2.62e-23 | 1 |
epithelium of gonad | 2.32e-12 | 2 |
spleen | 9.66e-09 | 3 |
gastrointestinal system mesentery | 9.66e-09 | 3 |
stomach region | 9.66e-09 | 3 |
mesentery | 9.66e-09 | 3 |
gastrointestinal system serosa | 9.66e-09 | 3 |
mesentery of stomach | 9.66e-09 | 3 |
gut mesentery | 9.66e-09 | 3 |
dorsal mesentery | 9.66e-09 | 3 |
dorsal mesogastrium | 9.66e-09 | 3 |
peritoneal cavity | 9.66e-09 | 3 |
spleen primordium | 9.66e-09 | 3 |
pigmented layer of retina | 1.30e-08 | 3 |
presumptive retinal pigmented epithelium | 1.30e-08 | 3 |
layer of retina | 9.11e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
ovary epithelial cancer | 2.62e-23 | 1 |
pancreas adenocarcinoma | 2.59e-12 | 2 |
pancreatic carcinoma | 2.59e-12 | 2 |
pancreatic ductal adenocarcinoma | 2.59e-12 | 2 |
signet ring cell adenocarcinoma | 3.62e-12 | 2 |
pancreatic cancer | 8.61e-07 | 4 |