FFCP PHASE1:Hg19::chr1:223853355..223853378,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1485 | |HGNC=1485 | ||
|TSSclassifier=strong | |||
|UniProt=A6NHC0 | |UniProt=A6NHC0 | ||
|association_with_transcript=-7bp_to_ENST00000366872_5end | |association_with_transcript=-7bp_to_ENST00000366872_5end | ||
|cluster_id=chr1:223853355..223853378,- | |||
|coexpression_cluster_id=C94 | |||
|description=CAGE_peak_2_at_CAPN8_5end | |description=CAGE_peak_2_at_CAPN8_5end | ||
|id=chr1:223853355..223853378,- | |id=chr1:223853355..223853378,- | ||
|ontology_enrichment_celltype=CL:0002327!1.33e-08!4 | |ontology_enrichment_celltype=CL:0002327!1.33e-08!4 | ||
|ontology_enrichment_celltype_v019=CL:0002178;2.40e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002178,2.43e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0008947;4.72e-11;29!UBERON:0006595;5.83e-10;86 | |||
|ontology_enrichment_disease=DOID:299!1.54e-12!25;DOID:5093!9.31e-10!4;DOID:1612!9.31e-10!4;DOID:305!1.86e-09!106 | |||
|ontology_enrichment_disease_v019=DOID:299;3.52e-16;25!DOID:5093;1.35e-10;4!DOID:1612;1.35e-10;4!DOID:3493;4.10e-10;2!DOID:3119;5.75e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:299,3.24e-16,25;DOID:5093,1.21e-10,4;DOID:1612,1.21e-10,4;DOID:3493,3.50e-10,2;DOID:305,2.81e-08,106;DOID:3119,6.02e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0004921!1.73e-18!129;UBERON:0004185!1.73e-18!129;UBERON:0001007!1.86e-15!155;UBERON:0001555!1.86e-15!155;UBERON:0007026!1.86e-15!155;UBERON:0005409!2.13e-14!35;UBERON:0004119!5.15e-14!169;UBERON:0000925!5.15e-14!169;UBERON:0006595!5.15e-14!169;UBERON:0005153!8.04e-13!37;UBERON:0000160!1.03e-12!27;UBERON:0000077!4.37e-12!130;UBERON:0001046!2.07e-11!19;UBERON:0000059!1.87e-09!11;UBERON:0005157!3.25e-09!51;UBERON:0001911!1.33e-08!4;UBERON:0005333!1.33e-08!4;UBERON:0008425!1.33e-08!4;UBERON:0005311!1.33e-08!4;UBERON:0002294!1.19e-07!7;UBERON:0001173!1.19e-07!7;UBERON:0004912!1.19e-07!7;UBERON:0000915!2.26e-07!52;UBERON:0004907!2.61e-07!5;UBERON:0000464!2.85e-07!104;UBERON:0000466!8.98e-07!126 | |||
|ontology_enrichment_uberon_v019=UBERON:0005409;1.38e-25;22!UBERON:0000160;3.27e-18;17!UBERON:0004921;2.06e-14;33!UBERON:0000059;4.22e-10;11!UBERON:0003127;5.02e-10;2!UBERON:0000945;3.07e-09;5!UBERON:0010039;3.07e-09;5!UBERON:0002048;3.47e-09;22!UBERON:0000117;3.47e-09;22!UBERON:0000171;3.47e-09;22!UBERON:0000170;3.47e-09;22!UBERON:0000915;2.54e-08;52!UBERON:0001155;2.68e-08;9!UBERON:0002108;2.84e-08;4!UBERON:0005178;1.06e-07;34!UBERON:0002224;1.06e-07;34!UBERON:0000310;3.17e-07;10!UBERON:0002114;9.74e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005409,2.45e-22,25;UBERON:0000160,3.24e-18,17;UBERON:0004921,1.96e-17,118;UBERON:0001007,1.64e-14,145;UBERON:0001555,1.64e-14,145;UBERON:0007026,1.64e-14,145;UBERON:0004119,1.33e-12,160;UBERON:0000925,1.33e-12,160;UBERON:0006595,1.33e-12,160;UBERON:0000915,9.93e-12,52;UBERON:0000059,4.56e-10,11;UBERON:0003127,6.02e-10,2;UBERON:0002048,3.56e-09,22;UBERON:0000117,3.56e-09,22;UBERON:0000171,3.56e-09,22;UBERON:0000170,3.56e-09,22;UBERON:0005597,3.56e-09,22;UBERON:0000118,3.56e-09,22;UBERON:0005178,3.66e-09,34;UBERON:0002224,3.66e-09,34;UBERON:0005181,7.43e-09,35;UBERON:0001155,2.81e-08,9;UBERON:0002108,2.95e-08,4;UBERON:0005153,3.39e-08,37;UBERON:0008947,4.95e-08,38;UBERON:0003258,4.95e-08,38;UBERON:0001046,1.37e-07,19;UBERON:0000310,2.87e-07,10;UBERON:0011216,3.09e-07,223 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,1.39560233594486,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17881167947941,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96781501668982,0,0.109750285408626,0,0.502644862058154,0,0,0,0,0,0,0,0,0,3.95102198979638,2.57545848628462,0,0,0,0,0,0,0.806026704325635,0.290633938513962,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0.200506470303285,0.184161977871793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.509752546090077,0,0.223874754722178,0,0,0,0,0,1.54561517471583,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564862804660675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.7198053942905,0,0,0,0,0.95497793895076,0,3.68592842519078,0,0,0,0,0,0.398495976502139,3.31540698637377,0,0,0,0,0.449341755736634,0.358042349351218,0,2.86065876347107,0,0,0,0,0,3.64598865519327,0.962059999958153,2.89999830173917,0,7.88186315907576,0,0,0,0,0,0,0,0,0,0,0,0,0.230850775511391,0,0,0,0,0,0.183195186803725,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0.282706142867882,0,8.95735737970654,3.62676014463691,4.888241159469,0,0,0,0.067401132980677,0,0,0,5.08728009223433,0,0,4.83962864194656,0,0,0,0,0,0,0,0,0,0,0,0.0979923974143777,0,0.17472666824203,0,0,0,0,0.193978032976839,0,0,0,0,0,0.586654148204409,0,11.3130087211857,0,20.3167488187289,0,0,0.288109595976299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.599037001496973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670869375198532,0.630445658393585,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.6203755579168,2.99004755189545,5.97376359378731,6.21358583020793,0,0,0,0,0,0,0,0,0.314108192500469,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.53574548030352,0,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.56302802246618,0,0,1.33070477595341,0,0,0,0,0,0,0.496211178389294,0,0.127762427639595,0,0,0,0,0,0,0,0,0,0,2.44709084162552,1.88383422841234,0,2.5224494698241,0.913158720509496,0,0,0,0,0,0,0,0,0,0,0.430227358820278,0,0,0,0.22910686854405,0,0,0.111855431797792,14.133633640595,2.92603019957447,0,0,0,0.485710993059139,0,0,0,0,0,3.32118255846682,1.389134845943,0.437119121007915,81.835209566905,1.22574160876953,4.94920748913415,0,0,0,0,0,0,0,0,0,1.12337913364836,20.4494188709025,0,0,0,0,0,4.7612415646386,0,0,0,0,0,0,0.101988829741982,0,1.01084389488329,0,0,0,0,0,1.27940389140589,0.23806443146374,0,0.0620747142958579,0,0,0,0.435433495793923,0,0.404112318087525,6.59844289612622,2.32862249582209,0,0,0,0,2.34640942403454,0.122241444182866,0,1.33151354837103,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,1.39560233594486,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17881167947941,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96781501668982,0,0.109750285408626,0,0.502644862058154,0,0,0,0,0,0,0,0,0,3.95102198979638,2.57545848628462,0,0,0,0,0,0,0.806026704325635,0.290633938513962,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0.200506470303285,0.184161977871793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.509752546090077,0,0.223874754722178,0,0,0,0,0,1.54561517471583,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564862804660675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.7198053942905,0,0,0,0,0.95497793895076,0,3.68592842519078,0,0,0,0,0,0.398495976502139,3.31540698637377,0,0,0,0,0.449341755736634,0.358042349351218,0,2.86065876347107,0,0,0,0,0,3.64598865519327,0.962059999958153,2.89999830173917,0,7.88186315907576,0,0,0,0,0,0,0,0,0,0,0,0,0.230850775511391,0,0,0,0,0,0.183195186803725,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0.282706142867882,0,8.95735737970654,3.62676014463691,4.888241159469,0,0,0,0.067401132980677,0,0,0,5.08728009223433,0,0,4.83962864194656,0,0,0,0,0,0,0,0,0,0,0,0.0979923974143777,0,0.17472666824203,0,0,0,0,0.193978032976839,0,0,0,0,0,0.586654148204409,0,11.3130087211857,0,20.3167488187289,0,0,0.288109595976299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.599037001496973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670869375198532,0.630445658393585,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.6203755579168,2.99004755189545,5.97376359378731,6.21358583020793,0,0,0,0,0,0,0,0,0.314108192500469,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.53574548030352,0,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.56302802246618,0,0,1.33070477595341,0,0,0,0,0,0,0.496211178389294,0,0.127762427639595,0,0,0,0,0,0,0,0,0,0,2.44709084162552,1.88383422841234,0,2.5224494698241,0.913158720509496,0,0,0,0,0,0,0,0,0,0,0.430227358820278,0,0,0,0.22910686854405,0,0,0.111855431797792,14.133633640595,2.92603019957447,0,0,0,0.485710993059139,0,0,0,0,0,3.32118255846682,1.389134845943,0.437119121007915,81.835209566905,1.22574160876953,4.94920748913415,0,0,0,0,0,0,0,0,0,1.12337913364836,20.4494188709025,0,0,0,0,0,4.7612415646386,0,0,0,0,0,0,0.101988829741982,0,1.01084389488329,0,0,0,0,0,1.27940389140589,0.23806443146374,0,0.0620747142958579,0,0,0,0.435433495793923,0,0.404112318087525,6.59844289612622,2.32862249582209,0,0,0,0,2.34640942403454,0.122241444182866,0,1.33151354837103,0,0 | ||
|short_description=p2@CAPN8 | |short_description=p2@CAPN8 | ||
}} | }} |
Latest revision as of 22:06, 15 September 2015
Short description: | p2@CAPN8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CAPN8_5end |
Coexpression cluster: | C94_smallcell_adrenal_lung_nonsmall_small_somatostatinoma_teratocarcinoma |
Association with transcript: | -7bp_to_ENST00000366872_5end |
EntrezGene: | NA |
HGNC: | 1485 |
UniProt: | A6NHC0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of stomach | 2.43e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system | 2.45e-22 | 25 |
intestine | 3.24e-18 | 17 |
subdivision of digestive tract | 1.96e-17 | 118 |
digestive system | 1.64e-14 | 145 |
digestive tract | 1.64e-14 | 145 |
primitive gut | 1.64e-14 | 145 |
endoderm-derived structure | 1.33e-12 | 160 |
endoderm | 1.33e-12 | 160 |
presumptive endoderm | 1.33e-12 | 160 |
thoracic segment of trunk | 9.93e-12 | 52 |
large intestine | 4.56e-10 | 11 |
open tracheal system trachea | 6.02e-10 | 2 |
lung | 3.56e-09 | 22 |
respiratory tube | 3.56e-09 | 22 |
respiration organ | 3.56e-09 | 22 |
pair of lungs | 3.56e-09 | 22 |
lung primordium | 3.56e-09 | 22 |
lung bud | 3.56e-09 | 22 |
thoracic cavity element | 3.66e-09 | 34 |
thoracic cavity | 3.66e-09 | 34 |
thoracic segment organ | 7.43e-09 | 35 |
colon | 2.81e-08 | 9 |
small intestine | 2.95e-08 | 4 |
epithelial bud | 3.39e-08 | 37 |
respiratory primordium | 4.95e-08 | 38 |
endoderm of foregut | 4.95e-08 | 38 |
hindgut | 1.37e-07 | 19 |
breast | 2.87e-07 | 10 |
organ system subdivision | 3.09e-07 | 223 |
Ontology term | p-value | n |
---|---|---|
adenocarcinoma | 3.24e-16 | 25 |
thoracic cancer | 1.21e-10 | 4 |
breast cancer | 1.21e-10 | 4 |
signet ring cell adenocarcinoma | 3.50e-10 | 2 |
carcinoma | 2.81e-08 | 106 |
gastrointestinal system cancer | 6.02e-08 | 14 |