FFCP PHASE1:Hg19::chr12:109458699..109458709,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene=55530 | |EntrezGene=55530 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=25417 | |HGNC=25417 | ||
|TSSclassifier= | |TSSclassifier=strong | ||
|UniProt=F8VNW2,Q8N4V2 | |UniProt=F8VNW2,Q8N4V2 | ||
|association_with_transcript=135bp_to_ENST00000550046,ENST00000550490,ENST00000551429,NM_018711,uc010sxh.1_5end | |association_with_transcript=135bp_to_ENST00000550046,ENST00000550490,ENST00000551429,NM_018711,uc010sxh.1_5end | ||
|cluster_id=chr12:109458699..109458709,- | |||
|coexpression_cluster_id=C3 | |coexpression_cluster_id=C3 | ||
|description=CAGE_peak_6_at_SVOP_5end | |description=CAGE_peak_6_at_SVOP_5end | ||
Latest revision as of 05:59, 16 September 2015
| Short description: | p6@SVOP |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_6_at_SVOP_5end |
| Coexpression cluster: | C3_occipital_temporal_insula_medial_postcentral_frontal_amygdala |
| Association with transcript: | 135bp_to_ENST00000550046, ENST00000550490, ENST00000551429, NM_018711, uc010sxh.1_5end |
| EntrezGene: | SVOP |
| HGNC: | 25417 |
| UniProt: | F8VNW2Q8N4V2 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p6@SVOP |
|---|
0.0
0.5
1.0
1.5
2.0
2.5
3.0
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| epithelial cell of cervix | 5.60e-07 | 2 |
Showing 1 to 1 of 1 entries
| Ontology term | p-value | n |
|---|---|---|
| neocortex | 5.86e-66 | 20 |
| regional part of cerebral cortex | 4.01e-60 | 22 |
| cerebral hemisphere | 3.39e-58 | 32 |
| telencephalon | 8.67e-55 | 34 |
| cerebral cortex | 4.74e-53 | 25 |
| pallium | 4.74e-53 | 25 |
| regional part of forebrain | 9.23e-53 | 41 |
| forebrain | 9.23e-53 | 41 |
| anterior neural tube | 9.23e-53 | 41 |
| future forebrain | 9.23e-53 | 41 |
Showing 1 to 10 of 60 entries
