FFCP PHASE1:Hg19::chr9:137218281..137218340,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr9:137218281..137218340,+
|short_description=p1@RXRA
|description=CAGE_peak_1_at_RXRA_5end
|association_with_transcript=0bp_to_NM_002957,uc004cfb.2_5end
|Ent...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6256 | |EntrezGene=6256 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10477 | |HGNC=10477 | ||
|TSSclassifier=strong | |||
|UniProt=F1D8Q5,P19793,Q6P3U7 | |UniProt=F1D8Q5,P19793,Q6P3U7 | ||
|association_with_transcript=0bp_to_NM_002957,uc004cfb.2_5end | |||
|cluster_id=chr9:137218281..137218340,+ | |||
|coexpression_cluster_id=C4808 | |||
|description=CAGE_peak_1_at_RXRA_5end | |||
|id=chr9:137218281..137218340,+ | |||
|ontology_enrichment_celltype=CL:0000766!1.36e-22!76;CL:0000839!4.83e-20!70;CL:0002057!5.85e-20!42;CL:0002194!5.48e-19!63;CL:0000576!5.48e-19!63;CL:0000040!5.48e-19!63;CL:0000559!5.48e-19!63;CL:0002009!5.86e-19!65;CL:0000557!7.40e-19!71;CL:0000860!2.27e-18!45;CL:0000763!1.63e-11!112;CL:0000049!1.63e-11!112 | |||
|ontology_enrichment_celltype_v019=CL:0000860;6.21e-15;33!CL:0002057;6.21e-15;33!CL:0000576;8.48e-14;48!CL:0000473;8.65e-14;39!CL:0000234;8.65e-14;39!CL:0000766;1.18e-11;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,2.92e-24,72;CL:0000839,1.17e-21,66;CL:0000473,3.53e-21,48;CL:0000234,3.53e-21,48;CL:0002194,1.10e-20,59;CL:0000576,1.10e-20,59;CL:0000040,1.10e-20,59;CL:0000559,1.10e-20,59;CL:0002009,1.32e-20,61;CL:0000557,2.27e-20,67;CL:0000860,5.84e-20,42;CL:0002057,5.84e-20,42;CL:0000763,3.56e-12,108;CL:0000049,3.56e-12,108 | |||
|ontology_enrichment_development_v019=CL:0002057;1.01e-14;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.63e-24!115;UBERON:0000468!9.85e-19!659;UBERON:0002371!3.18e-16!80;UBERON:0002390!4.54e-16!102;UBERON:0003061!4.54e-16!102;UBERON:0001474!5.45e-16!86;UBERON:0000467!3.15e-15!625;UBERON:0000062!3.73e-15!511;UBERON:0000480!7.76e-15!626;UBERON:0002193!1.57e-14!112;UBERON:0002405!2.71e-14!115;UBERON:0002050!3.69e-14!605;UBERON:0005423!3.69e-14!605;UBERON:0000922!4.92e-14!612;UBERON:0004765!5.51e-14!101;UBERON:0001434!5.51e-14!101;UBERON:0000923!5.69e-14!604;UBERON:0005291!5.69e-14!604;UBERON:0006598!5.69e-14!604;UBERON:0002532!5.69e-14!604;UBERON:0002204!3.65e-07!167;UBERON:0003081!5.12e-07!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.32e-24,114;UBERON:0002371,2.02e-17,76;UBERON:0001474,4.22e-17,82;UBERON:0002390,4.75e-17,98;UBERON:0003061,4.75e-17,98;UBERON:0004765,7.71e-16,90;UBERON:0002193,2.30e-15,108;UBERON:0001434,5.47e-15,100;UBERON:0002405,4.07e-13,93;UBERON:0000923,3.62e-12,560;UBERON:0010316,3.62e-12,560;UBERON:0005291,3.62e-12,560;UBERON:0006598,3.62e-12,560;UBERON:0010317,3.62e-12,560;UBERON:0002532,3.62e-12,560;UBERON:0002050,4.47e-12,564;UBERON:0000922,9.71e-12,592;UBERON:0005423,2.52e-11,581;UBERON:0003081,4.56e-08,203;UBERON:0002204,7.71e-08,167 | |||
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| ||
|short_description=p1@RXRA | |||
}} | }} |
Latest revision as of 08:15, 16 September 2015
Short description: | p1@RXRA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RXRA_5end |
Coexpression cluster: | C4808_Hepatocyte_keratoacanthoma_salivary_breast_liver_oral_Mesenchymal |
Association with transcript: | 0bp_to_NM_002957, uc004cfb.2_5end |
EntrezGene: | RXRA |
HGNC: | 10477 |
UniProt: | F1D8Q5P19793Q6P3U7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 2.92e-24 | 72 |
myeloid lineage restricted progenitor cell | 1.17e-21 | 66 |
defensive cell | 3.53e-21 | 48 |
phagocyte | 3.53e-21 | 48 |
monopoietic cell | 1.10e-20 | 59 |
monocyte | 1.10e-20 | 59 |
monoblast | 1.10e-20 | 59 |
promonocyte | 1.10e-20 | 59 |
macrophage dendritic cell progenitor | 1.32e-20 | 61 |
granulocyte monocyte progenitor cell | 2.27e-20 | 67 |
classical monocyte | 5.84e-20 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.84e-20 | 42 |
myeloid cell | 3.56e-12 | 108 |
common myeloid progenitor | 3.56e-12 | 108 |
Ontology term | p-value | n |
---|---|---|
adult organism | 3.32e-24 | 114 |
bone marrow | 2.02e-17 | 76 |
bone element | 4.22e-17 | 82 |
hematopoietic system | 4.75e-17 | 98 |
blood island | 4.75e-17 | 98 |
skeletal element | 7.71e-16 | 90 |
hemolymphoid system | 2.30e-15 | 108 |
skeletal system | 5.47e-15 | 100 |
immune system | 4.07e-13 | 93 |
germ layer | 3.62e-12 | 560 |
germ layer / neural crest | 3.62e-12 | 560 |
embryonic tissue | 3.62e-12 | 560 |
presumptive structure | 3.62e-12 | 560 |
germ layer / neural crest derived structure | 3.62e-12 | 560 |
epiblast (generic) | 3.62e-12 | 560 |
embryonic structure | 4.47e-12 | 564 |
embryo | 9.71e-12 | 592 |
developing anatomical structure | 2.52e-11 | 581 |
lateral plate mesoderm | 4.56e-08 | 203 |
musculoskeletal system | 7.71e-08 | 167 |