FFCP PHASE1:Hg19::chr14:90871053..90871096,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=801 | |EntrezGene=801 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=1442 | |HGNC=1442 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-179bp_to_BX537677_5end | |association_with_transcript=-179bp_to_BX537677_5end | ||
|cluster_id=chr14:90871053..90871096,+ | |||
|description=CAGE_peak_5_at_CALM1_5end | |description=CAGE_peak_5_at_CALM1_5end | ||
|id=chr14:90871053..90871096,+ | |id=chr14:90871053..90871096,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.23e-25!115;UBERON:0001049!2.58e-17!57;UBERON:0005068!2.58e-17!57;UBERON:0006241!2.58e-17!57;UBERON:0007135!2.58e-17!57;UBERON:0003080!3.29e-16!42;UBERON:0002780!1.19e-15!41;UBERON:0001890!1.19e-15!41;UBERON:0006240!1.19e-15!41;UBERON:0002616!7.11e-14!59;UBERON:0002020!7.73e-14!34;UBERON:0003528!7.73e-14!34;UBERON:0001893!1.30e-13!34;UBERON:0001017!2.05e-13!82;UBERON:0001869!3.12e-13!32;UBERON:0002791!3.13e-13!33;UBERON:0005743!4.36e-13!86;UBERON:0000073!2.76e-11!94;UBERON:0001016!2.76e-11!94;UBERON:0002619!4.76e-11!22;UBERON:0000955!1.51e-10!69;UBERON:0006238!1.51e-10!69;UBERON:0000956!4.24e-10!25;UBERON:0000203!4.24e-10!25;UBERON:0001950!6.47e-10!20;UBERON:0003075!5.52e-09!86;UBERON:0007284!5.52e-09!86;UBERON:0002346!4.04e-08!90;UBERON:0003056!5.27e-08!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;5.67e-13;32!UBERON:0002791;5.77e-13;32!UBERON:0003528;8.58e-13;34!UBERON:0002020;8.58e-13;34!UBERON:0001893;1.00e-12;34!UBERON:0002780;1.93e-12;41!UBERON:0001890;1.93e-12;41!UBERON:0002619;3.23e-12;22!UBERON:0001950;5.94e-11;20!UBERON:0000956;8.99e-11;25!UBERON:0000203;8.99e-11;25!UBERON:0000073;1.40e-10;53!UBERON:0002616;1.40e-10;53!UBERON:0007023;1.81e-07;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.61e-26,114;UBERON:0001049,6.54e-19,56;UBERON:0005068,6.54e-19,56;UBERON:0006241,6.54e-19,56;UBERON:0007135,6.54e-19,56;UBERON:0000073,1.59e-17,53;UBERON:0002616,1.59e-17,53;UBERON:0002780,9.60e-17,41;UBERON:0001890,9.60e-17,41;UBERON:0003080,9.60e-17,41;UBERON:0006240,9.60e-17,41;UBERON:0001017,2.59e-15,81;UBERON:0003528,1.01e-14,34;UBERON:0002020,1.01e-14,34;UBERON:0001893,1.79e-14,34;UBERON:0001869,4.77e-14,32;UBERON:0002791,5.63e-14,32;UBERON:0001016,6.36e-13,89;UBERON:0002619,4.30e-12,22;UBERON:0000955,7.45e-12,68;UBERON:0006238,7.45e-12,68;UBERON:0003075,4.00e-11,82;UBERON:0007284,4.00e-11,82;UBERON:0001950,7.78e-11,20;UBERON:0000956,1.37e-10,25;UBERON:0000203,1.37e-10,25;UBERON:0002346,2.70e-10,86;UBERON:0010371,7.10e-10,104;UBERON:0003056,9.19e-09,61;UBERON:0004111,5.67e-07,240 | |||
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| ||
|short_description=p5@CALM1 | |short_description=p5@CALM1 | ||
}} | }} |
Latest revision as of 12:16, 16 September 2015
Short description: | p5@CALM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_CALM1_5end |
Coexpression cluster: | NA |
Association with transcript: | -179bp_to_BX537677_5end |
EntrezGene: | CALM1 |
HGNC: | 1442 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 1.61e-26 | 114 |
neural tube | 6.54e-19 | 56 |
neural rod | 6.54e-19 | 56 |
future spinal cord | 6.54e-19 | 56 |
neural keel | 6.54e-19 | 56 |
regional part of nervous system | 1.59e-17 | 53 |
regional part of brain | 1.59e-17 | 53 |
regional part of forebrain | 9.60e-17 | 41 |
forebrain | 9.60e-17 | 41 |
anterior neural tube | 9.60e-17 | 41 |
future forebrain | 9.60e-17 | 41 |
central nervous system | 2.59e-15 | 81 |
brain grey matter | 1.01e-14 | 34 |
gray matter | 1.01e-14 | 34 |
telencephalon | 1.79e-14 | 34 |
cerebral hemisphere | 4.77e-14 | 32 |
regional part of telencephalon | 5.63e-14 | 32 |
nervous system | 6.36e-13 | 89 |
regional part of cerebral cortex | 4.30e-12 | 22 |
brain | 7.45e-12 | 68 |
future brain | 7.45e-12 | 68 |
neural plate | 4.00e-11 | 82 |
presumptive neural plate | 4.00e-11 | 82 |
neocortex | 7.78e-11 | 20 |
cerebral cortex | 1.37e-10 | 25 |
pallium | 1.37e-10 | 25 |
neurectoderm | 2.70e-10 | 86 |
ecto-epithelium | 7.10e-10 | 104 |
pre-chordal neural plate | 9.19e-09 | 61 |
anatomical conduit | 5.67e-07 | 240 |