FFCP PHASE1:Hg19::chr10:116286599..116286654,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DPIdataset= | |DHSsupport=supported | ||
|DPIdataset=robust | |||
|EntrezGene=3983 | |EntrezGene=3983 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=78 | |HGNC=78 | ||
|TSSclassifier= | |TSSclassifier=strong | ||
|UniProt= | |UniProt= | ||
|association_with_transcript=-5bp_to_ENST00000369257_5end | |association_with_transcript=-5bp_to_ENST00000369257_5end | ||
|cluster_id=chr10:116286599..116286654,- | |||
|description=CAGE_peak_2_at_ABLIM1_5end | |description=CAGE_peak_2_at_ABLIM1_5end | ||
|id=chr10:116286599..116286654,- | |id=chr10:116286599..116286654,- | ||
Latest revision as of 12:43, 16 September 2015
| Short description: | p2@ABLIM1 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_2_at_ABLIM1_5end |
| Coexpression cluster: | NA |
| Association with transcript: | -5bp_to_ENST00000369257_5end |
| EntrezGene: | ABLIM1 |
| HGNC: | 78 |
| UniProt: | NA |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p2@ABLIM1 |
|---|
0
25
50
75
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125
150
175
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| lymphocyte | 7.40e-13 | 53 |
| common lymphoid progenitor | 7.40e-13 | 53 |
| lymphoid lineage restricted progenitor cell | 1.13e-12 | 52 |
| endodermal cell | 1.72e-10 | 58 |
| mature alpha-beta T cell | 1.74e-10 | 18 |
| alpha-beta T cell | 1.74e-10 | 18 |
| immature T cell | 1.74e-10 | 18 |
| mature T cell | 1.74e-10 | 18 |
| immature alpha-beta T cell | 1.74e-10 | 18 |
| epithelial cell | 3.58e-10 | 253 |
Showing 1 to 10 of 15 entries
| Ontology term | p-value | n |
|---|---|---|
| adult organism | 9.79e-17 | 114 |
| subdivision of digestive tract | 2.55e-13 | 118 |
| digestive system | 8.81e-12 | 145 |
| digestive tract | 8.81e-12 | 145 |
| primitive gut | 8.81e-12 | 145 |
| foregut | 8.94e-12 | 87 |
| endoderm-derived structure | 3.33e-11 | 160 |
| endoderm | 3.33e-11 | 160 |
| presumptive endoderm | 3.33e-11 | 160 |
| respiratory system | 2.19e-10 | 74 |
Showing 1 to 10 of 17 entries
| Ontology term | p-value | n |
|---|---|---|
| carcinoma | 2.74e-19 | 106 |
| cell type cancer | 4.93e-14 | 143 |
| squamous cell carcinoma | 1.92e-07 | 14 |
Showing 1 to 3 of 3 entries
