FFCP PHASE1:Hg19::chr1:236046717..236046726,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1130 | |EntrezGene=1130 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1968 | |HGNC=1968 | ||
|TSSclassifier=strong | |||
|UniProt=F5H074 | |UniProt=F5H074 | ||
|association_with_transcript=145bp_to_ENST00000536965_5end | |association_with_transcript=145bp_to_ENST00000536965_5end | ||
|cluster_id=chr1:236046717..236046726,- | |||
|coexpression_cluster_id=C610 | |||
|description=CAGE_peak_17_at_LYST_5end | |description=CAGE_peak_17_at_LYST_5end | ||
|id=chr1:236046717..236046726,- | |id=chr1:236046717..236046726,- | ||
|ontology_enrichment_celltype=CL:0000990!5.01e-15!8;CL:0000148!2.39e-14!10;CL:0000541!2.39e-14!10;CL:0000453!7.58e-13!5;CL:0000451!3.59e-12!10;CL:0000147!4.94e-10!14;CL:0000710!8.51e-07!20 | |ontology_enrichment_celltype=CL:0000990!5.01e-15!8;CL:0000148!2.39e-14!10;CL:0000541!2.39e-14!10;CL:0000453!7.58e-13!5;CL:0000451!3.59e-12!10;CL:0000147!4.94e-10!14;CL:0000710!8.51e-07!20 | ||
|ontology_enrichment_celltype_v019=CL:0000148;4.47e-45;10!CL:0000147;2.72e-32;14!CL:0002567;4.05e-25;3!CL:0000710;1.11e-22;20!CL:0002566;2.97e-19;1!CL:0000075;7.51e-17;27!CL:0002077;1.23e-13;34 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,5.62e-45,10;CL:0000541,5.62e-45,10;CL:0000147,3.20e-32,14;CL:0002567,5.50e-25,3;CL:0000710,1.24e-22,20;CL:0002566,3.25e-19,1;CL:0000075,8.17e-17,27;CL:0002077,2.22e-13,34;CL:0000333,1.34e-10,41;CL:0000133,1.76e-07,59 | |||
|ontology_enrichment_development_v019=UBERON:0006215;1.81e-54;3 | |||
|ontology_enrichment_disease=DOID:1909!3.51e-09!2 | |||
|ontology_enrichment_disease_v019=DOID:1909;1.18e-36;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,2.93e-36,2 | |||
|ontology_enrichment_uberon=UBERON:0001049!1.99e-18!57;UBERON:0005068!1.99e-18!57;UBERON:0006241!1.99e-18!57;UBERON:0007135!1.99e-18!57;UBERON:0001017!7.11e-16!82;UBERON:0000955!7.17e-16!69;UBERON:0006238!7.17e-16!69;UBERON:0002616!1.29e-15!59;UBERON:0003076!5.17e-15!15;UBERON:0003057!5.17e-15!15;UBERON:0005743!6.53e-15!86;UBERON:0004733!1.23e-14!12;UBERON:0002028!1.23e-14!12;UBERON:0007277!1.23e-14!12;UBERON:0007023!5.89e-14!115;UBERON:0004732!1.96e-13!13;UBERON:0000073!4.85e-13!94;UBERON:0001016!4.85e-13!94;UBERON:0003075!3.60e-12!86;UBERON:0007284!3.60e-12!86;UBERON:0002346!1.98e-11!90;UBERON:0002680!9.00e-11!9;UBERON:0001895!9.00e-11!9;UBERON:0010092!9.00e-11!9;UBERON:0000153!3.12e-09!129;UBERON:0007811!3.12e-09!129;UBERON:0002619!5.49e-09!22;UBERON:0000033!6.27e-09!123;UBERON:0001893!1.79e-08!34;UBERON:0002780!2.57e-08!41;UBERON:0001890!2.57e-08!41;UBERON:0006240!2.57e-08!41;UBERON:0003080!4.49e-08!42;UBERON:0000956!8.35e-08!25;UBERON:0000203!8.35e-08!25;UBERON:0001950!1.28e-07!20;UBERON:0004121!1.70e-07!169;UBERON:0001869!2.16e-07!32;UBERON:0002298!3.18e-07!8;UBERON:0000924!3.34e-07!173;UBERON:0006601!3.34e-07!173;UBERON:0002791!3.99e-07!33;UBERON:0001872!5.21e-07!5;UBERON:0002020!6.59e-07!34;UBERON:0003528!6.59e-07!34;UBERON:0002037!8.26e-07!6;UBERON:0006215!8.26e-07!6 | |ontology_enrichment_uberon=UBERON:0001049!1.99e-18!57;UBERON:0005068!1.99e-18!57;UBERON:0006241!1.99e-18!57;UBERON:0007135!1.99e-18!57;UBERON:0001017!7.11e-16!82;UBERON:0000955!7.17e-16!69;UBERON:0006238!7.17e-16!69;UBERON:0002616!1.29e-15!59;UBERON:0003076!5.17e-15!15;UBERON:0003057!5.17e-15!15;UBERON:0005743!6.53e-15!86;UBERON:0004733!1.23e-14!12;UBERON:0002028!1.23e-14!12;UBERON:0007277!1.23e-14!12;UBERON:0007023!5.89e-14!115;UBERON:0004732!1.96e-13!13;UBERON:0000073!4.85e-13!94;UBERON:0001016!4.85e-13!94;UBERON:0003075!3.60e-12!86;UBERON:0007284!3.60e-12!86;UBERON:0002346!1.98e-11!90;UBERON:0002680!9.00e-11!9;UBERON:0001895!9.00e-11!9;UBERON:0010092!9.00e-11!9;UBERON:0000153!3.12e-09!129;UBERON:0007811!3.12e-09!129;UBERON:0002619!5.49e-09!22;UBERON:0000033!6.27e-09!123;UBERON:0001893!1.79e-08!34;UBERON:0002780!2.57e-08!41;UBERON:0001890!2.57e-08!41;UBERON:0006240!2.57e-08!41;UBERON:0003080!4.49e-08!42;UBERON:0000956!8.35e-08!25;UBERON:0000203!8.35e-08!25;UBERON:0001950!1.28e-07!20;UBERON:0004121!1.70e-07!169;UBERON:0001869!2.16e-07!32;UBERON:0002298!3.18e-07!8;UBERON:0000924!3.34e-07!173;UBERON:0006601!3.34e-07!173;UBERON:0002791!3.99e-07!33;UBERON:0001872!5.21e-07!5;UBERON:0002020!6.59e-07!34;UBERON:0003528!6.59e-07!34;UBERON:0002037!8.26e-07!6;UBERON:0006215!8.26e-07!6 | ||
|ontology_enrichment_uberon_v019=UBERON:0002037;1.12e-27;6!UBERON:0002680;1.04e-18;9!UBERON:0001895;1.04e-18;9!UBERON:0004733;3.30e-14;12!UBERON:0002028;3.30e-14;12!UBERON:0004732;3.63e-13;13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,5.91e-28,6;UBERON:0006215,5.91e-28,6;UBERON:0002680,6.80e-19,9;UBERON:0001895,6.80e-19,9;UBERON:0010092,6.80e-19,9;UBERON:0004733,2.40e-14,12;UBERON:0002028,2.40e-14,12;UBERON:0007277,2.40e-14,12;UBERON:0004732,2.71e-13,13;UBERON:0003076,1.32e-11,15;UBERON:0003057,1.32e-11,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246301768349837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0,0,0,0,0,0,0,0.174129737299267,0.26591592103773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,1.39695367442772,2.29193055334967,1.17217447210047,0,0.925447434329912,2.10240140490742,1.42913216315289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,0,1.52581736317083,2.98564001814306,1.47773809476774,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0.242780379534093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171986032471617,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0.101998217636322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272406812223151,0,0,0,0.2249738915515,0,0.121499113316049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0.0620964029413835,0,0,1.21319294033318,1.14186133417987,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.389720617678777,0.797189041880179,0.654261577023377,0,0,0,0.59996218756479,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41696576325585,0,0.205116364240755,0,0,0.161475645631851,0,0,0,0,0,0,0,0.198916222116275,0,0,0,0,0,0,0.0675375846183947,0,0.206686796501184,0.126831620387814,0,0,0,0,0,0.535701835878287,0,0,0,0,0,0.171488009437418,0.135939465953663,0.0657727735628491,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17071847709395,0,0,0,0,0,0,0,0.955538938977433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.297046400327086,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.402547587182052,0.320568492303233 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246301768349837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0,0,0,0,0,0,0,0.174129737299267,0.26591592103773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,1.39695367442772,2.29193055334967,1.17217447210047,0,0.925447434329912,2.10240140490742,1.42913216315289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,0,1.52581736317083,2.98564001814306,1.47773809476774,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0.242780379534093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171986032471617,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0.101998217636322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272406812223151,0,0,0,0.2249738915515,0,0.121499113316049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0.0620964029413835,0,0,1.21319294033318,1.14186133417987,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.389720617678777,0.797189041880179,0.654261577023377,0,0,0,0.59996218756479,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41696576325585,0,0.205116364240755,0,0,0.161475645631851,0,0,0,0,0,0,0,0.198916222116275,0,0,0,0,0,0,0.0675375846183947,0,0.206686796501184,0.126831620387814,0,0,0,0,0,0.535701835878287,0,0,0,0,0,0.171488009437418,0.135939465953663,0.0657727735628491,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17071847709395,0,0,0,0,0,0,0,0.955538938977433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.297046400327086,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.402547587182052,0.320568492303233 | ||
|short_description=p17@LYST | |short_description=p17@LYST | ||
}} | }} |
Latest revision as of 13:22, 16 September 2015
Short description: | p17@LYST |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_17_at_LYST_5end |
Coexpression cluster: | C610_melanoma_Melanocyte_migratory_mycosis_cerebellum_epithelioid_retina |
Association with transcript: | 145bp_to_ENST00000536965_5end |
EntrezGene: | LYST |
HGNC: | 1968 |
UniProt: | F5H074 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 5.62e-45 | 10 |
melanoblast | 5.62e-45 | 10 |
pigment cell | 3.20e-32 | 14 |
light melanocyte | 5.50e-25 | 3 |
neurecto-epithelial cell | 1.24e-22 | 20 |
dark melanocyte | 3.25e-19 | 1 |
columnar/cuboidal epithelial cell | 8.17e-17 | 27 |
ecto-epithelial cell | 2.22e-13 | 34 |
migratory neural crest cell | 1.34e-10 | 41 |
neurectodermal cell | 1.76e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
cerebellum | 5.91e-28 | 6 |
rhombic lip | 5.91e-28 | 6 |
regional part of metencephalon | 6.80e-19 | 9 |
metencephalon | 6.80e-19 | 9 |
future metencephalon | 6.80e-19 | 9 |
segmental subdivision of hindbrain | 2.40e-14 | 12 |
hindbrain | 2.40e-14 | 12 |
presumptive hindbrain | 2.40e-14 | 12 |
segmental subdivision of nervous system | 2.71e-13 | 13 |
posterior neural tube | 1.32e-11 | 15 |
chordal neural plate | 1.32e-11 | 15 |
Ontology term | p-value | n |
---|---|---|
melanoma | 2.93e-36 | 2 |