FFCP PHASE1:Hg19::chr19:18530184..18530230,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=170463 | |EntrezGene=170463 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15676 | |HGNC=15676 | ||
|TSSclassifier=strong | |||
|UniProt=Q9BWG4,Q9BWW5 | |UniProt=Q9BWG4,Q9BWW5 | ||
|association_with_transcript=0bp_to_ENST00000270061,ENST00000348495,uc002niy.2,uc002niz.2,uc010ebp.2_5end | |association_with_transcript=0bp_to_ENST00000270061,ENST00000348495,uc002niy.2,uc002niz.2,uc010ebp.2_5end | ||
|cluster_id=chr19:18530184..18530230,+ | |||
|description=CAGE_peak_1_at_SSBP4_5end | |description=CAGE_peak_1_at_SSBP4_5end | ||
|id=chr19:18530184..18530230,+ | |id=chr19:18530184..18530230,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype=CL:0000055!3.11e-07!180 | ||
| | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0001869;1.17e-08;32!UBERON:0002791;6.54e-08;32!UBERON:0002619;1.13e-07;22!UBERON:0001893;1.18e-07;34!UBERON:0000956;1.92e-07;25!UBERON:0000203;1.92e-07;25!UBERON:0003528;2.93e-07;34!UBERON:0002020;2.93e-07;34!UBERON:0001950;4.78e-07;20 | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001869!1.18e-09!32;UBERON:0001893!1.19e-08!34;UBERON:0003056!1.69e-08!61;UBERON:0002346!2.41e-08!90;UBERON:0002791!2.99e-08!33;UBERON:0002020!5.62e-08!34;UBERON:0003528!5.62e-08!34;UBERON:0002619!1.08e-07!22;UBERON:0000956!1.68e-07!25;UBERON:0000203!1.68e-07!25;UBERON:0003075!1.88e-07!86;UBERON:0007284!1.88e-07!86;UBERON:0001950!4.77e-07!20;UBERON:0000955!6.50e-07!69;UBERON:0006238!6.50e-07!69;UBERON:0002780!9.37e-07!41;UBERON:0001890!9.37e-07!41;UBERON:0006240!9.37e-07!41 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;1.17e-08;32!UBERON:0002791;6.54e-08;32!UBERON:0002619;1.13e-07;22!UBERON:0001893;1.18e-07;34!UBERON:0000956;1.92e-07;25!UBERON:0000203;1.92e-07;25!UBERON:0003528;2.93e-07;34!UBERON:0002020;2.93e-07;34!UBERON:0001950;4.78e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001869,1.18e-09,32;UBERON:0002791,1.14e-08,32;UBERON:0001893,1.19e-08,34;UBERON:0010314,1.58e-08,132;UBERON:0002346,2.32e-08,86;UBERON:0003056,2.65e-08,61;UBERON:0003528,5.62e-08,34;UBERON:0002020,5.62e-08,34;UBERON:0002619,1.08e-07,22;UBERON:0000956,1.68e-07,25;UBERON:0000203,1.68e-07,25;UBERON:0003075,1.86e-07,82;UBERON:0007284,1.86e-07,82;UBERON:0000955,2.97e-07,68;UBERON:0006238,2.97e-07,68;UBERON:0001950,4.77e-07,20;UBERON:0000073,5.37e-07,53;UBERON:0002616,5.37e-07,53;UBERON:0002780,9.37e-07,41;UBERON:0001890,9.37e-07,41;UBERON:0003080,9.37e-07,41;UBERON:0006240,9.37e-07,41 | |||
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| ||
|short_description=p1@SSBP4 | |short_description=p1@SSBP4 | ||
}} | }} |
Latest revision as of 16:01, 16 September 2015
Short description: | p1@SSBP4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SSBP4_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000270061, ENST00000348495, uc002niy.2, uc002niz.2, uc010ebp.2_5end |
EntrezGene: | SSBP4 |
HGNC: | 15676 |
UniProt: | Q9BWG4Q9BWW5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cerebral hemisphere | 1.18e-09 | 32 |
regional part of telencephalon | 1.14e-08 | 32 |
telencephalon | 1.19e-08 | 34 |
structure with developmental contribution from neural crest | 1.58e-08 | 132 |
neurectoderm | 2.32e-08 | 86 |
pre-chordal neural plate | 2.65e-08 | 61 |
brain grey matter | 5.62e-08 | 34 |
gray matter | 5.62e-08 | 34 |
regional part of cerebral cortex | 1.08e-07 | 22 |
cerebral cortex | 1.68e-07 | 25 |
pallium | 1.68e-07 | 25 |
neural plate | 1.86e-07 | 82 |
presumptive neural plate | 1.86e-07 | 82 |
brain | 2.97e-07 | 68 |
future brain | 2.97e-07 | 68 |
neocortex | 4.77e-07 | 20 |
regional part of nervous system | 5.37e-07 | 53 |
regional part of brain | 5.37e-07 | 53 |
regional part of forebrain | 9.37e-07 | 41 |
forebrain | 9.37e-07 | 41 |
anterior neural tube | 9.37e-07 | 41 |
future forebrain | 9.37e-07 | 41 |