FFCP PHASE1:Hg19::chr7:142028105..142028159,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=12226 | |HGNC=12226 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000390353_5end | |association_with_transcript=0bp_to_ENST00000390353_5end | ||
|cluster_id=chr7:142028105..142028159,+ | |||
|coexpression_cluster_id=C496 | |||
|description=CAGE_peak_1_at_TRBV6-1_5end | |description=CAGE_peak_1_at_TRBV6-1_5end | ||
|id=chr7:142028105..142028159,+ | |id=chr7:142028105..142028159,+ | ||
|ontology_enrichment_celltype=CL:0000791!1.10e-24!18;CL:0000789!1.10e-24!18;CL:0002420!1.10e-24!18;CL:0002419!1.10e-24!18;CL:0000790!1.10e-24!18;CL:0000625!1.27e-17!11;CL:0000084!3.97e-16!25;CL:0000827!3.97e-16!25;CL:0000738!2.00e-14!140;CL:0002087!2.19e-12!119;CL:0000624!1.72e-10!6;CL:0000838!1.74e-09!52;CL:0000542!3.48e-09!53;CL:0000051!3.48e-09!53;CL:0000037!3.69e-09!172;CL:0000566!3.69e-09!172;CL:0002031!3.94e-09!124;CL:0000988!5.92e-08!182;CL:0002032!1.05e-07!165;CL:0000837!1.05e-07!165 | |ontology_enrichment_celltype=CL:0000791!1.10e-24!18;CL:0000789!1.10e-24!18;CL:0002420!1.10e-24!18;CL:0002419!1.10e-24!18;CL:0000790!1.10e-24!18;CL:0000625!1.27e-17!11;CL:0000084!3.97e-16!25;CL:0000827!3.97e-16!25;CL:0000738!2.00e-14!140;CL:0002087!2.19e-12!119;CL:0000624!1.72e-10!6;CL:0000838!1.74e-09!52;CL:0000542!3.48e-09!53;CL:0000051!3.48e-09!53;CL:0000037!3.69e-09!172;CL:0000566!3.69e-09!172;CL:0002031!3.94e-09!124;CL:0000988!5.92e-08!182;CL:0002032!1.05e-07!165;CL:0000837!1.05e-07!165 | ||
|ontology_enrichment_celltype_v019=CL:0000791;1.45e-42;18!CL:0000789;1.45e-42;18!CL:0002419;1.45e-42;18!CL:0000625;9.76e-30;11!CL:0000084;2.76e-29;25!CL:0000624;3.44e-17;6!CL:0000898;6.11e-10;3!CL:0000542;1.31e-08;53!CL:0000226;1.43e-08;3!CL:0000842;1.43e-08;3!CL:0000623;1.70e-08;3!CL:0000815;3.04e-07;2!CL:0000792;3.04e-07;2!CL:0002677;3.04e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.47e-42,18;CL:0000789,1.47e-42,18;CL:0002420,1.47e-42,18;CL:0002419,1.47e-42,18;CL:0000790,1.47e-42,18;CL:0000625,1.00e-29,11;CL:0000084,2.78e-29,25;CL:0000827,2.78e-29,25;CL:0000624,3.39e-17,6;CL:0000838,1.35e-16,52;CL:0000542,3.51e-16,53;CL:0000051,3.51e-16,53;CL:0000898,6.12e-10,3;CL:0002087,3.22e-09,115;CL:0000738,4.09e-09,136;CL:0000226,1.49e-08,3;CL:0000842,1.49e-08,3;CL:0000623,1.79e-08,3;CL:0000825,1.79e-08,3;CL:0000815,3.04e-07,2;CL:0000792,3.04e-07,2;CL:0002677,3.04e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000790;1.45e-42;18!CL:0000051;1.31e-08;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.56e-15!115;UBERON:0000178!2.22e-13!15;UBERON:0000179!2.22e-13!15;UBERON:0000463!2.22e-13!15;UBERON:0002390!5.74e-09!102;UBERON:0003061!5.74e-09!102;UBERON:0002193!1.06e-08!112 | |ontology_enrichment_uberon=UBERON:0007023!2.56e-15!115;UBERON:0000178!2.22e-13!15;UBERON:0000179!2.22e-13!15;UBERON:0000463!2.22e-13!15;UBERON:0002390!5.74e-09!102;UBERON:0003061!5.74e-09!102;UBERON:0002193!1.06e-08!112 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.33e-23;15!UBERON:0000179;3.33e-23;15!UBERON:0000463;3.33e-23;15!UBERON:0002390;3.63e-16;32!UBERON:0002193;2.78e-11;42!UBERON:0004177;3.17e-09;5!UBERON:0005057;3.17e-09;5!UBERON:0002370;2.33e-07;2!UBERON:0005058;2.33e-07;2!UBERON:0009113;2.33e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,3.33e-23,15;UBERON:0000179,3.33e-23,15;UBERON:0000463,3.33e-23,15;UBERON:0004177,4.75e-10,7;UBERON:0005057,4.75e-10,7;UBERON:0002370,1.31e-07,4;UBERON:0005058,1.31e-07,4;UBERON:0009113,1.31e-07,4;UBERON:0003295,1.31e-07,4;UBERON:0005562,1.31e-07,4;UBERON:0003408,7.83e-07,10 | |||
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| ||
|short_description=p1@TRBV6-1 | |short_description=p1@TRBV6-1 | ||
}} | }} |
Latest revision as of 19:40, 16 September 2015
Short description: | p1@TRBV6-1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TRBV6-1_5end |
Coexpression cluster: | C496_thymus_CD4_CD8_hairy_vein_chronic_Peripheral |
Association with transcript: | 0bp_to_ENST00000390353_5end |
EntrezGene: | NA |
HGNC: | 12226 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.47e-42 | 18 |
alpha-beta T cell | 1.47e-42 | 18 |
immature T cell | 1.47e-42 | 18 |
mature T cell | 1.47e-42 | 18 |
immature alpha-beta T cell | 1.47e-42 | 18 |
CD8-positive, alpha-beta T cell | 1.00e-29 | 11 |
T cell | 2.78e-29 | 25 |
pro-T cell | 2.78e-29 | 25 |
CD4-positive, alpha-beta T cell | 3.39e-17 | 6 |
lymphoid lineage restricted progenitor cell | 1.35e-16 | 52 |
lymphocyte | 3.51e-16 | 53 |
common lymphoid progenitor | 3.51e-16 | 53 |
naive T cell | 6.12e-10 | 3 |
nongranular leukocyte | 3.22e-09 | 115 |
leukocyte | 4.09e-09 | 136 |
single nucleate cell | 1.49e-08 | 3 |
mononuclear cell | 1.49e-08 | 3 |
natural killer cell | 1.79e-08 | 3 |
pro-NK cell | 1.79e-08 | 3 |
regulatory T cell | 3.04e-07 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 3.04e-07 | 2 |
naive regulatory T cell | 3.04e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
blood | 3.33e-23 | 15 |
haemolymphatic fluid | 3.33e-23 | 15 |
organism substance | 3.33e-23 | 15 |
hemopoietic organ | 4.75e-10 | 7 |
immune organ | 4.75e-10 | 7 |
thymus | 1.31e-07 | 4 |
hemolymphoid system gland | 1.31e-07 | 4 |
thymic region | 1.31e-07 | 4 |
pharyngeal gland | 1.31e-07 | 4 |
thymus primordium | 1.31e-07 | 4 |
gland of gut | 7.83e-07 | 10 |