FFCP PHASE1:Hg19::chr3:182817297..182817356,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr3:182817297..182817356,- to FFCP PHASE1:Hg19::chr3:182817297..182817356,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=56922 | |EntrezGene=56922 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6936 | |HGNC=6936 | ||
|TSSclassifier=strong | |||
|UniProt=E7EX16,F2Z3E2,E9PG35,F2Z2Z7,F8WF46,F5GYT8 | |UniProt=E7EX16,F2Z3E2,E9PG35,F2Z2Z7,F8WF46,F5GYT8 | ||
|association_with_transcript=0bp_to_ENST00000448585,ENST00000466650,ENST00000476176,ENST00000487634,ENST00000490284,ENST00000495767,ENST00000497830,ENST00000539926_5end | |||
|cluster_id=chr3:182817297..182817356,- | |||
|description=CAGE_peak_1_at_MCCC1_5end | |||
|id=chr3:182817297..182817356,- | |||
|ontology_enrichment_celltype=CL:0000542!4.98e-08!53;CL:0000051!4.98e-08!53;CL:0000838!1.14e-07!52 | |||
|ontology_enrichment_celltype_v019=CL:0000945;8.88e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,4.98e-08,53;CL:0000051,4.98e-08,53;CL:0000838,1.14e-07,52 | |||
|ontology_enrichment_development_v019=UBERON:0006601;4.50e-07;82 | |||
|ontology_enrichment_disease=DOID:2531!4.85e-08!51;DOID:0060083!4.85e-08!51;DOID:1240!7.26e-08!39;DOID:8692!1.94e-07!31 | |||
|ontology_enrichment_disease_v019=DOID:8692;2.07e-07;31 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,4.85e-08,51;DOID:0060083,4.85e-08,51;DOID:1240,7.26e-08,39;DOID:8692,1.94e-07,31 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.20e-27!115;UBERON:0001049!8.80e-19!57;UBERON:0005068!8.80e-19!57;UBERON:0006241!8.80e-19!57;UBERON:0007135!8.80e-19!57;UBERON:0002780!2.43e-16!41;UBERON:0001890!2.43e-16!41;UBERON:0006240!2.43e-16!41;UBERON:0003080!6.77e-16!42;UBERON:0002616!2.44e-15!59;UBERON:0000955!7.29e-14!69;UBERON:0006238!7.29e-14!69;UBERON:0001893!1.18e-13!34;UBERON:0002020!2.09e-13!34;UBERON:0003528!2.09e-13!34;UBERON:0002791!3.05e-13!33;UBERON:0000073!1.55e-12!94;UBERON:0001016!1.55e-12!94;UBERON:0001869!1.75e-12!32;UBERON:0001017!1.01e-11!82;UBERON:0005743!7.59e-11!86;UBERON:0002619!4.35e-10!22;UBERON:0003075!7.63e-10!86;UBERON:0007284!7.63e-10!86;UBERON:0002346!1.14e-09!90;UBERON:0000956!4.17e-09!25;UBERON:0000203!4.17e-09!25;UBERON:0001950!4.53e-09!20;UBERON:0000153!8.77e-07!129;UBERON:0007811!8.77e-07!129;UBERON:0003056!9.24e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;5.05e-12;41!UBERON:0001890;5.05e-12;41!UBERON:0001893;9.56e-12;34!UBERON:0003528;1.42e-11;34!UBERON:0002020;1.42e-11;34!UBERON:0002791;1.84e-11;32!UBERON:0001869;2.99e-11;32!UBERON:0000073;3.97e-11;53!UBERON:0002616;3.97e-11;53!UBERON:0002619;4.28e-10;22!UBERON:0000956;3.58e-09;25!UBERON:0000203;3.58e-09;25!UBERON:0001950;4.61e-09;20!UBERON:0007023;2.53e-08;114!UBERON:0000955;7.79e-07;68!UBERON:0001017;9.55e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.96e-27,114;UBERON:0001049,3.53e-19,56;UBERON:0005068,3.53e-19,56;UBERON:0006241,3.53e-19,56;UBERON:0007135,3.53e-19,56;UBERON:0000073,5.76e-18,53;UBERON:0002616,5.76e-18,53;UBERON:0002780,2.43e-16,41;UBERON:0001890,2.43e-16,41;UBERON:0003080,2.43e-16,41;UBERON:0006240,2.43e-16,41;UBERON:0000955,4.10e-14,68;UBERON:0006238,4.10e-14,68;UBERON:0001893,1.18e-13,34;UBERON:0001016,1.22e-13,89;UBERON:0003528,2.09e-13,34;UBERON:0002020,2.09e-13,34;UBERON:0002791,1.15e-12,32;UBERON:0001869,1.75e-12,32;UBERON:0001017,6.61e-12,81;UBERON:0003075,4.16e-10,82;UBERON:0007284,4.16e-10,82;UBERON:0002619,4.35e-10,22;UBERON:0002346,6.56e-10,86;UBERON:0011216,2.64e-09,223;UBERON:0000956,4.17e-09,25;UBERON:0000203,4.17e-09,25;UBERON:0001950,4.53e-09,20;UBERON:0010314,7.85e-08,132;UBERON:0003056,2.55e-07,61 | |||
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| ||
|short_description=p1@MCCC1 | |||
}} | }} |
Latest revision as of 23:14, 16 September 2015
Short description: | p1@MCCC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MCCC1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000448585, ENST00000466650, ENST00000476176, ENST00000487634, ENST00000490284, ENST00000495767, ENST00000497830, ENST00000539926_5end |
EntrezGene: | MCCC1 |
HGNC: | 6936 |
UniProt: | E7EX16F2Z3E2E9PG35F2Z2Z7F8WF46F5GYT8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 4.98e-08 | 53 |
common lymphoid progenitor | 4.98e-08 | 53 |
lymphoid lineage restricted progenitor cell | 1.14e-07 | 52 |
Ontology term | p-value | n |
---|---|---|
adult organism | 3.96e-27 | 114 |
neural tube | 3.53e-19 | 56 |
neural rod | 3.53e-19 | 56 |
future spinal cord | 3.53e-19 | 56 |
neural keel | 3.53e-19 | 56 |
regional part of nervous system | 5.76e-18 | 53 |
regional part of brain | 5.76e-18 | 53 |
regional part of forebrain | 2.43e-16 | 41 |
forebrain | 2.43e-16 | 41 |
anterior neural tube | 2.43e-16 | 41 |
future forebrain | 2.43e-16 | 41 |
brain | 4.10e-14 | 68 |
future brain | 4.10e-14 | 68 |
telencephalon | 1.18e-13 | 34 |
nervous system | 1.22e-13 | 89 |
brain grey matter | 2.09e-13 | 34 |
gray matter | 2.09e-13 | 34 |
regional part of telencephalon | 1.15e-12 | 32 |
cerebral hemisphere | 1.75e-12 | 32 |
central nervous system | 6.61e-12 | 81 |
neural plate | 4.16e-10 | 82 |
presumptive neural plate | 4.16e-10 | 82 |
regional part of cerebral cortex | 4.35e-10 | 22 |
neurectoderm | 6.56e-10 | 86 |
organ system subdivision | 2.64e-09 | 223 |
cerebral cortex | 4.17e-09 | 25 |
pallium | 4.17e-09 | 25 |
neocortex | 4.53e-09 | 20 |
structure with developmental contribution from neural crest | 7.85e-08 | 132 |
pre-chordal neural plate | 2.55e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 4.85e-08 | 51 |
immune system cancer | 4.85e-08 | 51 |
leukemia | 7.26e-08 | 39 |
myeloid leukemia | 1.94e-07 | 31 |