FFCP PHASE1:Hg19::chr7:150065900..150065929,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr7:150065900..150065929,+ to FFCP PHASE1:Hg19::chr7:150065900..150065929,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=29803 | |EntrezGene=29803 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17922 | |HGNC=17922 | ||
|TSSclassifier=strong | |||
|UniProt=C9J7D4,C9J590,C9JYJ8 | |UniProt=C9J7D4,C9J590,C9JYJ8 | ||
|association_with_transcript=0bp_to_ENST00000467980,ENST00000482680,ENST00000488943,ENST00000495535_5end | |||
|cluster_id=chr7:150065900..150065929,+ | |||
|description=CAGE_peak_1_at_REPIN1_5end | |||
|id=chr7:150065900..150065929,+ | |||
|ontology_enrichment_celltype=CL:0000115!3.60e-11!35;CL:0002078!7.86e-10!44;CL:0000213!1.26e-09!57;CL:0000215!1.26e-09!57;CL:1000497!4.43e-07!18;CL:0002518!4.43e-07!18;CL:0000451!4.45e-07!10;CL:0002139!9.45e-07!24 | |||
|ontology_enrichment_celltype_v019=CL:0000115;6.80e-10;36!CL:1000497;2.39e-07;17!CL:0002518;2.39e-07;17!CL:0000451;4.13e-07;10!CL:0002078;5.50e-07;45!CL:0002139;8.99e-07;24!CL:1000449;9.62e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,1.42e-11,36;CL:0002078,3.30e-10,45;CL:0000213,5.57e-10,58;CL:0000215,5.57e-10,58;CL:1000497,2.18e-07,17;CL:0002518,2.18e-07,17;CL:0000451,4.45e-07,10;CL:1000449,8.72e-07,15;CL:0002139,9.45e-07,24 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1240!5.81e-07!39;DOID:2531!7.70e-07!51;DOID:0060083!7.70e-07!51 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:1240,5.81e-07,39;DOID:2531,7.70e-07,51;DOID:0060083,7.70e-07,51 | |||
|ontology_enrichment_uberon=UBERON:0005172!1.49e-12!55;UBERON:0005173!1.49e-12!55;UBERON:0002417!4.49e-10!61;UBERON:0000916!4.49e-10!61;UBERON:0002113!3.24e-08!27;UBERON:0003918!3.24e-08!27;UBERON:0005095!3.24e-08!27;UBERON:0007687!3.24e-08!27;UBERON:0005177!5.60e-08!107;UBERON:0003887!7.60e-08!21;UBERON:0000489!3.07e-07!32;UBERON:0009854!6.23e-07!23;UBERON:0000080!8.29e-07!18;UBERON:0002120!8.29e-07!18;UBERON:0004875!8.29e-07!18;UBERON:0005721!8.29e-07!18;UBERON:0005754!8.29e-07!18;UBERON:0007297!8.29e-07!18;UBERON:0005057!9.00e-07!26 | |||
|ontology_enrichment_uberon_v019=UBERON:0002113;4.44e-08;24!UBERON:0011143;4.44e-08;24!UBERON:0005172;4.73e-08;52!UBERON:0005173;4.73e-08;52!UBERON:0000353;4.11e-07;15!UBERON:0000489;5.03e-07;29!UBERON:0006555;9.62e-07;15!UBERON:0004819;9.62e-07;15!UBERON:0001285;9.62e-07;15!UBERON:0007684;9.62e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005172,9.83e-13,54;UBERON:0005173,9.83e-13,54;UBERON:0002417,3.37e-10,60;UBERON:0000916,3.37e-10,60;UBERON:0005177,9.68e-09,101;UBERON:0002113,1.87e-08,26;UBERON:0003918,1.87e-08,26;UBERON:0011143,1.87e-08,26;UBERON:0005095,1.87e-08,26;UBERON:0007687,1.87e-08,26;UBERON:0000489,2.08e-07,31;UBERON:0000353,3.46e-07,15;UBERON:0006555,5.56e-07,16;UBERON:0004819,5.56e-07,16;UBERON:0009854,6.23e-07,23;UBERON:0004211,8.72e-07,15;UBERON:0009773,8.72e-07,15;UBERON:0001231,8.72e-07,15;UBERON:0001285,8.72e-07,15;UBERON:0007684,8.72e-07,15;UBERON:0004208,8.72e-07,15 | |||
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| ||
|short_description=p1@REPIN1 | |||
}} | }} |
Latest revision as of 02:56, 17 September 2015
Short description: | p1@REPIN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_REPIN1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000467980, ENST00000482680, ENST00000488943, ENST00000495535_5end |
EntrezGene: | REPIN1 |
HGNC: | 17922 |
UniProt: | C9J7D4C9J590C9JYJ8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 1.42e-11 | 36 |
meso-epithelial cell | 3.30e-10 | 45 |
lining cell | 5.57e-10 | 58 |
barrier cell | 5.57e-10 | 58 |
kidney cell | 2.18e-07 | 17 |
kidney epithelial cell | 2.18e-07 | 17 |
dendritic cell | 4.45e-07 | 10 |
epithelial cell of nephron | 8.72e-07 | 15 |
endothelial cell of vascular tree | 9.45e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
abdomen element | 9.83e-13 | 54 |
abdominal segment element | 9.83e-13 | 54 |
abdominal segment of trunk | 3.37e-10 | 60 |
abdomen | 3.37e-10 | 60 |
trunk region element | 9.68e-09 | 101 |
kidney | 1.87e-08 | 26 |
kidney mesenchyme | 1.87e-08 | 26 |
upper urinary tract | 1.87e-08 | 26 |
kidney rudiment | 1.87e-08 | 26 |
kidney field | 1.87e-08 | 26 |
cavitated compound organ | 2.08e-07 | 31 |
parenchyma | 3.46e-07 | 15 |
excretory tube | 5.56e-07 | 16 |
kidney epithelium | 5.56e-07 | 16 |
digestive tract diverticulum | 6.23e-07 | 23 |
nephron epithelium | 8.72e-07 | 15 |
renal tubule | 8.72e-07 | 15 |
nephron tubule | 8.72e-07 | 15 |
nephron | 8.72e-07 | 15 |
uriniferous tubule | 8.72e-07 | 15 |
nephrogenic mesenchyme | 8.72e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
leukemia | 5.81e-07 | 39 |
hematologic cancer | 7.70e-07 | 51 |
immune system cancer | 7.70e-07 | 51 |