FFCP PHASE1:Hg19::chr4:26322419..26322479,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3516 | |EntrezGene=3516 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5724 | |HGNC=5724 | ||
|TSSclassifier=strong | |||
|UniProt=B4DY22,D6RF98,Q06330 | |UniProt=B4DY22,D6RF98,Q06330 | ||
|association_with_transcript=0bp_to_ENST00000348160,ENST00000355476,ENST00000509158,NM_015874,NM_203284,uc003gsa.1,uc003gsb.1_5end | |association_with_transcript=0bp_to_ENST00000348160,ENST00000355476,ENST00000509158,NM_015874,NM_203284,uc003gsa.1,uc003gsb.1_5end | ||
|cluster_id=chr4:26322419..26322479,+ | |||
|description=CAGE_peak_2_at_RBPJ_5end | |description=CAGE_peak_2_at_RBPJ_5end | ||
|id=chr4:26322419..26322479,+ | |id=chr4:26322419..26322479,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.79e-28!115;UBERON:0001049!7.74e-16!57;UBERON:0005068!7.74e-16!57;UBERON:0006241!7.74e-16!57;UBERON:0007135!7.74e-16!57;UBERON:0000073!5.61e-15!94;UBERON:0001016!5.61e-15!94;UBERON:0001017!2.02e-14!82;UBERON:0002616!8.56e-14!59;UBERON:0003080!1.27e-13!42;UBERON:0005743!1.28e-13!86;UBERON:0002780!1.54e-13!41;UBERON:0001890!1.54e-13!41;UBERON:0006240!1.54e-13!41;UBERON:0000955!1.66e-12!69;UBERON:0006238!1.66e-12!69;UBERON:0003075!1.74e-11!86;UBERON:0007284!1.74e-11!86;UBERON:0004121!5.03e-11!169;UBERON:0002020!8.46e-11!34;UBERON:0003528!8.46e-11!34;UBERON:0001893!1.84e-10!34;UBERON:0002346!2.39e-10!90;UBERON:0000924!2.71e-10!173;UBERON:0006601!2.71e-10!173;UBERON:0002791!3.19e-10!33;UBERON:0000153!6.14e-10!129;UBERON:0007811!6.14e-10!129;UBERON:0000033!6.88e-10!123;UBERON:0001869!2.00e-09!32;UBERON:0003056!6.86e-09!61;UBERON:0000922!3.18e-08!612;UBERON:0000468!1.62e-07!659;UBERON:0002619!1.90e-07!22;UBERON:0000481!3.40e-07!347;UBERON:0000480!6.20e-07!626;UBERON:0000956!7.56e-07!25;UBERON:0000203!7.56e-07!25;UBERON:0000467!8.92e-07!625;UBERON:0000475!9.97e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;5.74e-10;41!UBERON:0001890;5.74e-10;41!UBERON:0003528;3.95e-09;34!UBERON:0002020;3.95e-09;34!UBERON:0001893;4.59e-09;34!UBERON:0000073;6.64e-09;53!UBERON:0002616;6.64e-09;53!UBERON:0002791;1.10e-08;32!UBERON:0001869;2.11e-08;32!UBERON:0007023;4.55e-08;114!UBERON:0002619;2.40e-07;22!UBERON:0000956;9.33e-07;25!UBERON:0000203;9.33e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.37e-27,114;UBERON:0001049,9.75e-16,56;UBERON:0005068,9.75e-16,56;UBERON:0006241,9.75e-16,56;UBERON:0007135,9.75e-16,56;UBERON:0001016,1.20e-15,89;UBERON:0000073,1.99e-14,53;UBERON:0002616,1.99e-14,53;UBERON:0001017,2.70e-14,81;UBERON:0002780,1.54e-13,41;UBERON:0001890,1.54e-13,41;UBERON:0003080,1.54e-13,41;UBERON:0006240,1.54e-13,41;UBERON:0011216,7.65e-13,223;UBERON:0000955,2.20e-12,68;UBERON:0006238,2.20e-12,68;UBERON:0003075,3.88e-12,82;UBERON:0007284,3.88e-12,82;UBERON:0010314,4.99e-11,132;UBERON:0002346,6.49e-11,86;UBERON:0003528,8.46e-11,34;UBERON:0002020,8.46e-11,34;UBERON:0004121,1.55e-10,171;UBERON:0000924,1.55e-10,171;UBERON:0006601,1.55e-10,171;UBERON:0001893,1.84e-10,34;UBERON:0002791,9.95e-10,32;UBERON:0001869,2.00e-09,32;UBERON:0003056,3.15e-09,61;UBERON:0010371,7.79e-08,104;UBERON:0002619,1.90e-07,22;UBERON:0000922,5.21e-07,592;UBERON:0000956,7.56e-07,25;UBERON:0000203,7.56e-07,25 | |||
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| ||
|short_description=p2@RBPJ | |short_description=p2@RBPJ | ||
}} | }} |
Latest revision as of 11:15, 17 September 2015
Short description: | p2@RBPJ |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RBPJ_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000348160, ENST00000355476, ENST00000509158, NM_015874, NM_203284, uc003gsa.1, uc003gsb.1_5end |
EntrezGene: | RBPJ |
HGNC: | 5724 |
UniProt: | B4DY22D6RF98Q06330 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 1.37e-27 | 114 |
neural tube | 9.75e-16 | 56 |
neural rod | 9.75e-16 | 56 |
future spinal cord | 9.75e-16 | 56 |
neural keel | 9.75e-16 | 56 |
nervous system | 1.20e-15 | 89 |
regional part of nervous system | 1.99e-14 | 53 |
regional part of brain | 1.99e-14 | 53 |
central nervous system | 2.70e-14 | 81 |
regional part of forebrain | 1.54e-13 | 41 |
forebrain | 1.54e-13 | 41 |
anterior neural tube | 1.54e-13 | 41 |
future forebrain | 1.54e-13 | 41 |
organ system subdivision | 7.65e-13 | 223 |
brain | 2.20e-12 | 68 |
future brain | 2.20e-12 | 68 |
neural plate | 3.88e-12 | 82 |
presumptive neural plate | 3.88e-12 | 82 |
structure with developmental contribution from neural crest | 4.99e-11 | 132 |
neurectoderm | 6.49e-11 | 86 |
brain grey matter | 8.46e-11 | 34 |
gray matter | 8.46e-11 | 34 |
ectoderm-derived structure | 1.55e-10 | 171 |
ectoderm | 1.55e-10 | 171 |
presumptive ectoderm | 1.55e-10 | 171 |
telencephalon | 1.84e-10 | 34 |
regional part of telencephalon | 9.95e-10 | 32 |
cerebral hemisphere | 2.00e-09 | 32 |
pre-chordal neural plate | 3.15e-09 | 61 |
ecto-epithelium | 7.79e-08 | 104 |
regional part of cerebral cortex | 1.90e-07 | 22 |
embryo | 5.21e-07 | 592 |
cerebral cortex | 7.56e-07 | 25 |
pallium | 7.56e-07 | 25 |