FFCP PHASE1:Hg19::chr1:31345407..31345418,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9672 | |EntrezGene=9672 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=10660 | |HGNC=10660 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=17bp_to_AL049426_5end | |association_with_transcript=17bp_to_AL049426_5end | ||
|cluster_id=chr1:31345407..31345418,- | |||
|description=CAGE_peak_10_at_SDC3_5end | |description=CAGE_peak_10_at_SDC3_5end | ||
|id=chr1:31345407..31345418,- | |id=chr1:31345407..31345418,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000349;1.11e-09;19!CL:0002536;5.11e-07;2!CL:0000317;8.28e-07;2!CL:1000448;8.28e-07;2!CL:0002308;8.28e-07;2!CL:0002140;8.28e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,9.71e-10,19;CL:0002536,5.11e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!2.36e-20!57;UBERON:0005068!2.36e-20!57;UBERON:0006241!2.36e-20!57;UBERON:0007135!2.36e-20!57;UBERON:0002616!1.95e-15!59;UBERON:0001017!2.54e-15!82;UBERON:0002020!4.35e-15!34;UBERON:0003528!4.35e-15!34;UBERON:0002780!7.31e-15!41;UBERON:0001890!7.31e-15!41;UBERON:0006240!7.31e-15!41;UBERON:0003075!1.47e-14!86;UBERON:0007284!1.47e-14!86;UBERON:0005743!1.72e-14!86;UBERON:0001893!2.09e-14!34;UBERON:0003080!3.16e-14!42;UBERON:0002791!4.72e-14!33;UBERON:0000955!2.14e-13!69;UBERON:0006238!2.14e-13!69;UBERON:0001869!2.50e-13!32;UBERON:0002346!4.18e-13!90;UBERON:0000073!3.71e-12!94;UBERON:0001016!3.71e-12!94;UBERON:0003056!7.83e-12!61;UBERON:0000956!1.06e-11!25;UBERON:0000203!1.06e-11!25;UBERON:0002619!3.43e-11!22;UBERON:0007023!1.59e-10!115;UBERON:0001950!5.91e-10!20;UBERON:0000468!6.23e-10!659;UBERON:0000475!1.15e-09!365;UBERON:0000033!1.62e-09!123;UBERON:0000153!2.07e-09!129;UBERON:0007811!2.07e-09!129;UBERON:0004121!3.31e-09!169;UBERON:0000924!1.64e-08!173;UBERON:0006601!1.64e-08!173;UBERON:0000467!2.20e-08!625;UBERON:0000480!2.81e-08!626;UBERON:0000062!2.96e-08!511;UBERON:0000477!3.26e-08!286;UBERON:0000119!1.42e-07!312;UBERON:0003076!1.82e-07!15;UBERON:0003057!1.82e-07!15;UBERON:0000483!1.96e-07!309;UBERON:0000025!3.22e-07!194;UBERON:0004111!7.03e-07!241 | |||
|ontology_enrichment_uberon_v019=UBERON:0002021;2.19e-20;5!UBERON:0001950;3.78e-13;20!UBERON:0001874;2.32e-12;1!UBERON:0002619;5.33e-12;22!UBERON:0002791;1.70e-11;32!UBERON:0001869;9.58e-11;32!UBERON:0000956;1.32e-10;25!UBERON:0000203;1.32e-10;25!UBERON:0003528;3.26e-10;34!UBERON:0002020;3.26e-10;34!UBERON:0001893;2.14e-09;34!UBERON:0000478;1.06e-07;24!UBERON:0001871;2.33e-07;6!UBERON:0002771;4.55e-07;2!UBERON:0001897;8.28e-07;2!UBERON:0002419;8.28e-07;2!UBERON:0007771;8.28e-07;2!UBERON:0003297;8.28e-07;2!UBERON:0001821;8.28e-07;2!UBERON:0003487;8.28e-07;2!UBERON:0001820;8.28e-07;2!UBERON:0010225;8.28e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002021,2.27e-20,5;UBERON:0001950,4.20e-13,20;UBERON:0002780,2.99e-12,41;UBERON:0001890,2.99e-12,41;UBERON:0003080,2.99e-12,41;UBERON:0006240,2.99e-12,41;UBERON:0001874,3.08e-12,1;UBERON:0002619,5.86e-12,22;UBERON:0002791,1.14e-11,32;UBERON:0001869,1.14e-11,32;UBERON:0003528,5.54e-11,34;UBERON:0002020,5.54e-11,34;UBERON:0001893,5.54e-11,34;UBERON:0000956,1.44e-10,25;UBERON:0000203,1.44e-10,25;UBERON:0000073,2.19e-09,53;UBERON:0002616,2.19e-09,53;UBERON:0000955,3.10e-09,68;UBERON:0006238,3.10e-09,68;UBERON:0001049,7.40e-09,56;UBERON:0005068,7.40e-09,56;UBERON:0006241,7.40e-09,56;UBERON:0007135,7.40e-09,56;UBERON:0003056,4.34e-08,61;UBERON:0005631,8.42e-08,14;UBERON:0000158,8.42e-08,14;UBERON:0000478,9.56e-08,24;UBERON:0001017,1.21e-07,81;UBERON:0001871,2.60e-07,6;UBERON:0003124,2.60e-07,7;UBERON:0002771,4.56e-07,2;UBERON:0001897,6.80e-07,2;UBERON:0010225,6.80e-07,2;UBERON:0001016,8.32e-07,89 | |||
|phase1_expression=0,0.428201047781966,0.140954404095971,0,0,0,0,0.631719873426831,0.522371256399677,0,0,2.40285509343189,0.263766978228454,0,0.331397375727916,0.672325146451775,0,0,0.487932798790507,0.369363174230364,0.204000691244253,0.313454721478088,0.572471974262113,0.410623275218653,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0.145398238779565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211255286311942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0.361439152384566,0,0,0,0.486634870302636,0.0945348171640679,0,0,0.196468613246569,0.364295288292542,0,0,0,0,0,0,0,0,0,0.694281003215189,0,0,0,0,0,0,0.33472061276467,0.402829317109147,0,0.732186172644509,0,0,0,0,0,0,0,0,0,0,0,0,0.379891534993739,0,0.286836620748814,0.354668382198357,0,1.06748995729705,0,0.622422070799533,0.269421344139376,0.326923806226917,0,0,0,0,0,0,0.23486899728753,0,0,0,0.122834317311768,0,0,0.247266929278557,0,0,0,0.250237039743928,0,0.438977620880838,0,0.150238058906597,0,0.538168907066586,0.213557388818567,0,0.600182192168805,0.206105058476878,0.257640540045629,0.18611685633159,0.337552664482532,0.389748020644795,0,0,0.161646056818812,1.06502877754984,0.302256294682921,0.169560592310488,0,0,0,0.243947412259191,0.132529768321485,0,0,0,0,0,0.643240938192885,0,0.464367928031979,0,0,0,0,0,0.217879444092406,0.237270619111097,0,0,0,0.738155454624648,0,0.4115740113314,0,0,0,0.590789906681404,0,0,0.343135620597051,0,0,0,0.0925884451585296,0,0,0,0.115930404975077,0.117408694235822,0.577465791044295,0,0.190254152234598,0,0,0,0,0.148631162288728,0,0.16798212819886,0,0.179117045405697,0,0,0,0.088048434013226,0,0,0,0.253991577168676,0,0,1.71072446022705,0.205654985406647,0,0.857479297891735,0.112131084345361,0,0.07333828582095,0.129271715757778,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0.791951872933429,0,0,0,2.43247561282381,0,0,0.239624855491583,2.29723871668228,0,0.434343920002738,0.410952645100767,0.179060963239896,0,0,0,0,0.508189248444927,0,0.773288812777695,0.167516265334349,0.637938751653163,0,0,0,0,0.500170521059677,0,0,0.178428988797162,0,0.117141414992713,0,0,0,0,0,0.347534457872331,0.391602314925481,0,0,0,0,0.303127571446259,1.66435439510497,0.907170879989041,0,0,0.280660094433074,0.128139149255701,0,0.321707842287215,0,0.462629081407967,0.177561725313127,0,0,0.116210378459959,0,0.200506470303285,0,0.229628896329213,0.182091168006717,0.393373244878272,0,0.15403067420883,0,0,0.105551628892876,0,0,0,0,0,0.501689773854853,0,0,0.223874754722178,0,0,0,0,0,0,0.183138929636687,0.165018999841176,1.14853107599234,0.650060246036521,0,0.096670718292122,0,0,0,0,0,0,0,0,0.192190067365106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.42793898803392,0,0,0,0,0.117812402345686,0,0,0,0.48763373908959,0,0,0,0.141405431953713,0,0,0.66343897524122,0,0.578775534266688,0,0,0,0,0.143411352204052,0.0982490410131212,0,0,0,0,0.379473173765715,0.699869440489966,0,0,0,0.0941438007767792,0,0,0.443430153536676,0.229723400206959,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0.121360521749513,0,0.284136146806413,0,0,0.307160702099232,0,0.703347082052564,0,0,0,0.796991953004279,0,0,0,0.123084805461069,0.311039587661807,0,0,0,0.295930216910801,0,0,1.93866549219044,0.371072392647405,0,0,0,0,0,0,0,0.344743373241465,0,0.173624994933292,0,0.60298219312704,0,0,0.295547618953547,0,0,0,0,0.113942055847001,0.23056390438806,0.0897576444097721,0,0,0,1.5991043280559,0,0,0.166211681900156,0,0.19606253431774,0,0,0,0,0,0,0,0,0,0,0,0,0,0.269604531922708,0,0,0,0,0,0,1.20990716048664,0.61214552326098,0.126373159256976,0,0,0,0,0,0,0,0.277349346026277,0.173559738335131,0.0979923974143777,0,0.17472666824203,0,0.0967563312890851,0.0730893170861856,0,0,0.176512253383001,0,0,0,0.126621591911757,0,0.160317640503067,0.213452994739353,0.19980960958213,0,0,0,0,0,0,0,0,0.305994652908965,0,0,0.410716136675979,0,0.859530882839914,0,0,0,0,0.199679000498991,0.858452096273142,0,0,0.360299883542404,0,0,0,0,0.0984274815147488,0,0.795229689809303,0.272406812223151,0,0,0,0,0,0.242998226632099,0,0,0,0.105600336519406,0,0,0,0,0.25426853765475,0,0,0,0,0,0,0.113312091520126,0.293104467356165,0,0.646414781807753,0.79339561045614,0,0,0.106787412567695,0,0,0.496166021811951,0,0,0,0,0,0,0,0,0.886068179966986,4.51497180137264,0.1251909307065,0.573409195690071,0.554645257684261,0.372578417648301,0,0,0.151649117541648,0.570930667089935,0.235265819698172,0,0,0,0,0,0,0,0,0,0.302461847526478,0.15543720058278,0,0,0,0.155262956876259,0,0.265841714557995,0,0.300515217994437,0,0,0.181848659202559,0.107410557042488,0,0,0.400027764663154,0,0,0,0,0,0,0.226705925512272,0,0,0,0.308801447160972,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0.655219697692825,0.245772908753719,0,0,0,0,0,0,0,0,0,0,0.314531883711793,0,0,0,0,0,0,0,0,0.705351887381368,0.6124909547064,0.449604575675217,1.41696576325585,1.27707087245721,0.205116364240755,1.26035848110859,0,0.645902582527404,0,0,0,0,0,0.38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| ||
|short_description=p10@SDC3 | |short_description=p10@SDC3 | ||
}} | }} |
Latest revision as of 12:38, 17 September 2015
Short description: | p10@SDC3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_SDC3_5end |
Coexpression cluster: | NA |
Association with transcript: | 17bp_to_AL049426_5end |
EntrezGene: | SDC3 |
HGNC: | 10660 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 9.71e-10 | 19 |
amniotic epithelial cell | 5.11e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
occipital lobe | 2.27e-20 | 5 |
neocortex | 4.20e-13 | 20 |
regional part of forebrain | 2.99e-12 | 41 |
forebrain | 2.99e-12 | 41 |
anterior neural tube | 2.99e-12 | 41 |
future forebrain | 2.99e-12 | 41 |
putamen | 3.08e-12 | 1 |
regional part of cerebral cortex | 5.86e-12 | 22 |
regional part of telencephalon | 1.14e-11 | 32 |
cerebral hemisphere | 1.14e-11 | 32 |
brain grey matter | 5.54e-11 | 34 |
gray matter | 5.54e-11 | 34 |
telencephalon | 5.54e-11 | 34 |
cerebral cortex | 1.44e-10 | 25 |
pallium | 1.44e-10 | 25 |
regional part of nervous system | 2.19e-09 | 53 |
regional part of brain | 2.19e-09 | 53 |
brain | 3.10e-09 | 68 |
future brain | 3.10e-09 | 68 |
neural tube | 7.40e-09 | 56 |
neural rod | 7.40e-09 | 56 |
future spinal cord | 7.40e-09 | 56 |
neural keel | 7.40e-09 | 56 |
pre-chordal neural plate | 4.34e-08 | 61 |
extraembryonic membrane | 8.42e-08 | 14 |
membranous layer | 8.42e-08 | 14 |
extraembryonic structure | 9.56e-08 | 24 |
central nervous system | 1.21e-07 | 81 |
temporal lobe | 2.60e-07 | 6 |
chorion | 2.60e-07 | 7 |
middle temporal gyrus | 4.56e-07 | 2 |
dorsal plus ventral thalamus | 6.80e-07 | 2 |
thalamic complex | 6.80e-07 | 2 |
nervous system | 8.32e-07 | 89 |