FFCP PHASE1:Hg19::chr1:156030987..156031007,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57111 | |EntrezGene=57111 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18238 | |HGNC=18238 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000487325_5end | |association_with_transcript=0bp_to_ENST00000487325_5end | ||
|cluster_id=chr1:156030987..156031007,+ | |||
|coexpression_cluster_id=C543 | |||
|description=CAGE_peak_2_at_RAB25_5end | |description=CAGE_peak_2_at_RAB25_5end | ||
|id=chr1:156030987..156031007,+ | |id=chr1:156030987..156031007,+ | ||
|ontology_enrichment_celltype=CL:0000066!1.87e-24!254;CL:0002076!5.24e-21!43;CL:0000223!1.50e-16!59;CL:0002368!1.88e-10!13;CL:0002251!2.58e-10!21;CL:0002159!4.98e-10!13;CL:0002202!5.12e-08!9;CL:0002632!5.12e-08!9 | |ontology_enrichment_celltype=CL:0000066!1.87e-24!254;CL:0002076!5.24e-21!43;CL:0000223!1.50e-16!59;CL:0002368!1.88e-10!13;CL:0002251!2.58e-10!21;CL:0002159!4.98e-10!13;CL:0002202!5.12e-08!9;CL:0002632!5.12e-08!9 | ||
|ontology_enrichment_celltype_v019=CL:0002076;1.23e-19;42!CL:0002368;1.52e-12;13!CL:0002251;3.44e-12;20!CL:0002202;1.49e-09;9!CL:0002632;1.49e-09;9!CL:0002159;1.69e-09;14!CL:0000240;2.76e-07;6!CL:0000311;2.76e-07;6!CL:0000079;2.76e-07;6!CL:0000237;2.76e-07;6!CL:0000244;9.41e-07;4!CL:0000731;9.41e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,8.60e-30,253;CL:0002076,1.13e-25,42;CL:0000223,5.15e-20,58;CL:0002368,1.54e-12,13;CL:0002251,3.53e-12,20;CL:0002202,1.41e-09,9;CL:0002632,1.41e-09,9;CL:0002159,1.64e-09,14;CL:0000240,2.70e-07,6;CL:0000311,2.70e-07,6;CL:0000079,2.70e-07,6;CL:0000237,2.70e-07,6;CL:0000036,2.70e-07,6;CL:0000357,2.70e-07,6;CL:0000114,2.70e-07,6;CL:0000244,9.82e-07,4;CL:0000731,9.82e-07,4 | |||
|ontology_enrichment_development_v019=CL:0000223;5.58e-11;58!CL:0000357;2.76e-07;6!CL:0000114;2.76e-07;6 | |||
|ontology_enrichment_disease=DOID:305!4.69e-14!106;DOID:1749!1.08e-09!14;DOID:0050687!2.42e-08!143;DOID:299!3.41e-07!25 | |||
|ontology_enrichment_disease_v019=DOID:1749;4.71e-10;14!DOID:299;3.35e-08;25 | |||
|ontology_enrichment_disease_v019_2=DOID:305,3.56e-16,106;DOID:0050687,1.10e-10,143;DOID:1749,3.92e-10,14;DOID:299,3.25e-08,25 | |||
|ontology_enrichment_uberon=UBERON:0004119!6.05e-24!169;UBERON:0000925!6.05e-24!169;UBERON:0006595!6.05e-24!169;UBERON:0001007!9.66e-18!155;UBERON:0001555!9.66e-18!155;UBERON:0007026!9.66e-18!155;UBERON:0004921!8.67e-16!129;UBERON:0004185!8.67e-16!129;UBERON:0000077!7.80e-15!130;UBERON:0000464!1.70e-14!104;UBERON:0001004!6.60e-13!72;UBERON:0000466!1.03e-12!126;UBERON:0000161!9.67e-11!35;UBERON:0005911!3.50e-10!82;UBERON:0005153!1.69e-09!37;UBERON:0001041!3.05e-09!98;UBERON:0005631!3.61e-09!14;UBERON:0000158!3.61e-09!14;UBERON:0005178!5.58e-09!34;UBERON:0002224!5.58e-09!34;UBERON:0000166!7.72e-09!21;UBERON:0000065!1.44e-08!53;UBERON:0005181!1.58e-08!35;UBERON:0005156!1.23e-07!59;UBERON:0000990!1.23e-07!59;UBERON:0001008!1.29e-07!45;UBERON:0006554!2.98e-07!44;UBERON:0002553!3.18e-07!70;UBERON:0000344!3.19e-07!12;UBERON:0005177!6.44e-07!107;UBERON:0007196!8.79e-07!14;UBERON:0001558!8.79e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0004921;7.01e-13;33!UBERON:0005178;9.57e-10;34!UBERON:0002224;9.57e-10;34!UBERON:0001555;3.03e-09;54!UBERON:0005181;1.31e-08;35!UBERON:0005409;2.22e-08;22!UBERON:0005911;2.38e-08;36!UBERON:0000161;8.35e-08;19!UBERON:0000166;8.35e-08;19!UBERON:0007196;1.37e-07;15!UBERON:0001558;1.37e-07;15!UBERON:0005631;1.47e-07;10!UBERON:0000158;1.47e-07;10!UBERON:0000344;1.88e-07;20!UBERON:0000165;2.24e-07;28!UBERON:0001041;2.29e-07;14!UBERON:0004807;2.34e-07;22!UBERON:0000365;2.82e-07;5!UBERON:0002048;3.19e-07;22!UBERON:0000117;3.19e-07;22!UBERON:0000171;3.19e-07;22!UBERON:0000170;3.19e-07;22!UBERON:0000160;3.85e-07;17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.15e-27,160;UBERON:0000925,1.15e-27,160;UBERON:0006595,1.15e-27,160;UBERON:0001007,2.53e-20,145;UBERON:0001555,2.53e-20,145;UBERON:0007026,2.53e-20,145;UBERON:0004921,1.57e-17,118;UBERON:0001004,2.01e-13,74;UBERON:0001008,1.28e-11,48;UBERON:0006554,3.84e-11,47;UBERON:0000161,3.97e-11,36;UBERON:0005631,4.41e-11,14;UBERON:0000158,4.41e-11,14;UBERON:0005911,5.64e-11,82;UBERON:0005178,1.19e-10,34;UBERON:0002224,1.19e-10,34;UBERON:0005181,3.60e-10,35;UBERON:0001041,1.06e-09,87;UBERON:0005153,1.45e-09,37;UBERON:0005177,2.86e-09,101;UBERON:0000166,4.19e-09,22;UBERON:0000065,5.18e-09,54;UBERON:0000915,2.44e-08,52;UBERON:0005157,2.64e-08,47;UBERON:0003124,1.32e-07,7;UBERON:0007196,1.35e-07,15;UBERON:0001558,1.35e-07,15;UBERON:0000344,1.73e-07,20;UBERON:0000365,2.69e-07,5;UBERON:0000160,3.28e-07,17;UBERON:0002048,3.32e-07,22;UBERON:0000117,3.32e-07,22;UBERON:0000171,3.32e-07,22;UBERON:0000170,3.32e-07,22;UBERON:0005597,3.32e-07,22;UBERON:0000118,3.32e-07,22;UBERON:0009569,3.99e-07,112;UBERON:0005409,5.22e-07,25;UBERON:0000165,5.28e-07,29;UBERON:0000930,5.28e-07,29;UBERON:0004175,7.06e-07,25;UBERON:0005156,9.62e-07,59;UBERON:0000990,9.62e-07,59 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,23.8361918406464,71.87352030116,15.7277787933724,14.5071838025649,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0,0,0,0,0,12.871897142705,9.93979531968225,16.2691764473387,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,0,0,0,0.393010762749165,0,0.501559486172034,0,0,0,0.222820913770347,0.294605907474837,0,0,0,0,0,0,0,0.296573126324121,0.802622484269139,1.04535523804977,0.113309342697566,0,0,0.253019692019503,0,0.651083453856419,0,0,0.511946444617674,0,0.236777252044017,0,0,0.267440195783507,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,2.35762335895883,32.7865759463288,29.6627554227544,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,23.5490788156969,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0.570471821544449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.11695583285847,5.45492241181669,4.58887352622406,2.31750041646231,2.12047629314376,4.88014560051977,2.28054321033815,5.2987378683882,2.55484151353081,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,0,0,0,12.5448207313976,0,12.6212828219919,10.1161577931858,7.23808601363742,9.62919829648708,0,0,0,0,0,0,0,0,15.8040879591855,15.4527509177077,0,0,0,4.68669169933885,0.503946384596579,7.65585525108887,0.626909658919938,3.48760726216754,6.9008882249738,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0,0.128343036279748,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0.215714200818617,0,5.75942385747893,16.6435439510497,11.7932214398575,0,0,0,0,0,0,0,0,0,0,0,0,14.6239934005863,9.2232976339511,8.19520801529477,0,0,0.131124414959424,13.0847887743149,7.3164570249194,0.784349769176855,2.92278449306521,2.21658420675039,0,0,0,0,0,0,7.64628819135115,9.14183609821597,2.23874754722178,0,0,0,0.328014645699706,0,1.54561517471583,0,0,11.4853107599234,19.5018073810956,0,0,0,0,0,0,0,0,0,9.42124017557575,3.2672311452068,2.04180339991335,3.94515345336645,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.7768766252574,17.4278591639305,14.1558280319719,1.12972560932135,20.2337525155478,30.3248656201726,23.0583679839071,12.1753402109689,0,0,0,0,0.411362273086194,0,0,0,0,0,7.10616626344992,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.42132431836989,0,0,0,0,26.5006378058836,7.42411702081597,31.0232309120224,0,0,0,0,0,0.19924798825107,4.42054264849836,9.57344441846249,0,0,0,12.0423590537418,18.0811386422365,0,1.7755813014648,0,0,0,0,0,6.2502662660456,17.7543799992277,0,8.64830206969797,12.4584288643455,11.110221043093,0,0,0,0,0,0,0,0,0,0,15.6154593592036,10.9269367075392,0,1.61394733071642,6.64206568632314,9.56096872913671,9.25103363222567,3.75550132947635,3.19820865611181,0,0,0,0,0,0,0.189753732724185,0,0,5.87638109372932,5.51276978592369,0,15.9241908972561,7.87272324079719,4.888241159469,0,0,0,0,0,0,0,14.6748464199067,0,5.91876604274086,1.20990716048664,0,0,0,0,0,0,0,0,3.69992409838731,0,3.47119476670262,11.5631028948966,2.35059857767087,3.31980669659857,0,0,0,0,29.1936939630142,0,0.677942222341597,0,0,0.0633107959558787,22.6839603972372,3.44682927081595,6.61704283691993,0,21.6135625731159,0,0,0,0,20.0339929424276,0,0,0,0,0,0,0,0,0,0,0,0,9.58459202395157,0,0,0.0671834724867263,0,1.16495949527454,0,0,0.0674035438541849,0,0,0,0,4.98334760241559,5.22649859069488,4.98528405635022,0.449947783103001,1.5476039091159,0,3.01891218839339,4.3343139014559,5.08809504909482,0,0,0.575745591958336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.2107455132835,3.41719720216623,4.55892484789031,6.62782488555513,0,0,0.121792598380896,8.93677760878255,0,0,0,0,6.43921794625961,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,4.68334905806882,4.92731497276806,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.9882304146486,0,0,0,0,0,8.53264997088611,4.35454082023081,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.18330626556461,2.83127336034577,6.78685814530212,9.93520728892909,0,0,0,0.150420656698515,0,7.03362610109783,3.14288033377707,0,8.27994082815454,0,0,0,0,0,9.86863980342928,3.47347824872506,0,15.3314913167514,0,0,1.82089681270989,0.455324382702595,1.24183318227694,0,0,0,0.0657727735628491,0,1.89093383216518,2.8257513426185,0,10.9306143692378,1.82631744101899,0,0,0.142953088353313,0,0,0,0,0.62164849248911,1.3657478167516,3.45629830907046,16.3486396351705,0,0,3.38709640152743,8.7060610046739,0,0,0.335566295393377,10.502074996831,25.1150925463475,0,0,0,1.94284397223656,0,0,0,7.00265708641552,0,8.0010307090337,7.71741581079447,6.77534637562268,17.8720572617379,0.245148321753905,14.8476224674024,0,0,0,0,0.0939839179798536,0.128915775947154,0,8.57058905307156,6.70500256259814,7.70317120216015,1.46067277649303,6.88093925106811,0,0,0,0,5.81929524566941,0,0,0,0.378499274505237,0.546327859818478,1.64708051314868,1.22386595690378,1.87052183685892,3.76769088092864,3.259198010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| ||
|short_description=p2@RAB25 | |short_description=p2@RAB25 | ||
}} | }} |
Latest revision as of 14:32, 17 September 2015
Short description: | p2@RAB25 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RAB25_5end |
Coexpression cluster: | C543_Alveolar_Corneal_Urothelial_amniotic_Esophageal_Tracheal_esophagus |
Association with transcript: | 0bp_to_ENST00000487325_5end |
EntrezGene: | RAB25 |
HGNC: | 18238 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 8.60e-30 | 253 |
endo-epithelial cell | 1.13e-25 | 42 |
endodermal cell | 5.15e-20 | 58 |
respiratory epithelial cell | 1.54e-12 | 13 |
epithelial cell of alimentary canal | 3.53e-12 | 20 |
epithelial cell of tracheobronchial tree | 1.41e-09 | 9 |
epithelial cell of lower respiratory tract | 1.41e-09 | 9 |
general ecto-epithelial cell | 1.64e-09 | 14 |
stratified squamous epithelial cell | 2.70e-07 | 6 |
keratin accumulating cell | 2.70e-07 | 6 |
stratified epithelial cell | 2.70e-07 | 6 |
keratinizing barrier epithelial cell | 2.70e-07 | 6 |
epithelial fate stem cell | 2.70e-07 | 6 |
stratified epithelial stem cell | 2.70e-07 | 6 |
surface ectodermal cell | 2.70e-07 | 6 |
transitional epithelial cell | 9.82e-07 | 4 |
urothelial cell | 9.82e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.56e-16 | 106 |
cell type cancer | 1.10e-10 | 143 |
squamous cell carcinoma | 3.92e-10 | 14 |
adenocarcinoma | 3.25e-08 | 25 |