FFCP PHASE1:Hg19::chr1:33430424..33430450,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=127544 | |EntrezGene=127544 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26886 | |HGNC=26886 | ||
|TSSclassifier=strong | |||
|UniProt=G3XA82,E9PAW6,Q6ZMZ0,F5GY25 | |UniProt=G3XA82,E9PAW6,Q6ZMZ0,F5GY25 | ||
|association_with_transcript=-138bp_to_ENST00000235150,ENST00000356990,ENST00000373456,ENST00000405457,NM_001127361,NM_153341,uc001bwm.3,uc010oho.1,uc010ohp.1_5end | |association_with_transcript=-138bp_to_ENST00000235150,ENST00000356990,ENST00000373456,ENST00000405457,NM_001127361,NM_153341,uc001bwm.3,uc010oho.1,uc010ohp.1_5end | ||
|cluster_id=chr1:33430424..33430450,- | |||
|coexpression_cluster_id=C1347 | |coexpression_cluster_id=C1347 | ||
|description=CAGE_peak_3_at_RNF19B_5end | |description=CAGE_peak_3_at_RNF19B_5end | ||
|id=chr1:33430424..33430450,- | |id=chr1:33430424..33430450,- | ||
|ontology_enrichment_celltype=CL:0000860;2.79e-17;33!CL:0002057;2.79e-17;33!CL:0000576;6.88e-12;48!CL:0000473;9.44e-12;39!CL:0000234;9.44e-12;39!CL:0000766;3.52e-09;69!CL:0000094;3.56e-07;8 | |ontology_enrichment_celltype=CL:0002057!8.49e-22!42;CL:0000860!3.94e-18!45;CL:0000766!2.62e-13!76;CL:0000738!1.45e-10!140;CL:0002009!2.30e-10!65;CL:0002194!6.88e-10!63;CL:0000576!6.88e-10!63;CL:0000040!6.88e-10!63;CL:0000559!6.88e-10!63;CL:0000557!1.26e-09!71;CL:0000839!2.79e-08!70;CL:0000763!9.37e-08!112;CL:0000049!9.37e-08!112;CL:0000094!7.44e-07!8;CL:0002087!8.23e-07!119 | ||
| | |ontology_enrichment_celltype_v019=CL:0000860;2.79e-17;33!CL:0002057;2.79e-17;33!CL:0000576;6.88e-12;48!CL:0000473;9.44e-12;39!CL:0000234;9.44e-12;39!CL:0000766;3.52e-09;69!CL:0000094;3.56e-07;8 | ||
|ontology_enrichment_celltype_v019_2=CL:0000860,4.53e-22,42;CL:0002057,4.53e-22,42;CL:0000473,4.64e-18,48;CL:0000234,4.64e-18,48;CL:0000766,7.54e-17,72;CL:0002009,1.62e-13,61;CL:0002194,5.27e-13,59;CL:0000576,5.27e-13,59;CL:0000040,5.27e-13,59;CL:0000559,5.27e-13,59;CL:0000738,5.54e-13,136;CL:0000557,1.32e-12,67;CL:0000839,3.63e-11,66;CL:0000763,8.47e-10,108;CL:0000049,8.47e-10,108;CL:0002087,1.16e-08,115;CL:0000037,3.15e-08,168;CL:0002031,7.12e-08,120;CL:0000988,1.35e-07,177;CL:0002032,2.26e-07,161;CL:0000837,2.26e-07,161;CL:0000094,6.31e-07,8 | |||
|ontology_enrichment_development_v019=CL:0002057;1.16e-16;42 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!3.26e-11!216;UBERON:0002390!9.29e-10!102;UBERON:0003061!9.29e-10!102;UBERON:0002193!2.63e-09!112;UBERON:0002371!2.07e-08!80;UBERON:0001474!2.30e-07!86 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.99e-12,98;UBERON:0003061,4.99e-12,98;UBERON:0003081,2.00e-11,203;UBERON:0002193,2.78e-11,108;UBERON:0002371,6.80e-11,76;UBERON:0001474,1.75e-09,82;UBERON:0004765,1.61e-08,90;UBERON:0002405,8.63e-08,93;UBERON:0001434,1.06e-07,100 | |||
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| ||
|short_description=p3@RNF19B | |short_description=p3@RNF19B | ||
}} | }} |
Latest revision as of 16:26, 17 September 2015
Short description: | p3@RNF19B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RNF19B_5end |
Coexpression cluster: | C1347_testis_Neutrophils_Eosinophils_CD14_Basophils_blood_Whole |
Association with transcript: | -138bp_to_ENST00000235150, ENST00000356990, ENST00000373456, ENST00000405457, NM_001127361, NM_153341, uc001bwm.3, uc010oho.1, uc010ohp.1_5end |
EntrezGene: | RNF19B |
HGNC: | 26886 |
UniProt: | G3XA82E9PAW6Q6ZMZ0F5GY25 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 4.53e-22 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.53e-22 | 42 |
defensive cell | 4.64e-18 | 48 |
phagocyte | 4.64e-18 | 48 |
myeloid leukocyte | 7.54e-17 | 72 |
macrophage dendritic cell progenitor | 1.62e-13 | 61 |
monopoietic cell | 5.27e-13 | 59 |
monocyte | 5.27e-13 | 59 |
monoblast | 5.27e-13 | 59 |
promonocyte | 5.27e-13 | 59 |
leukocyte | 5.54e-13 | 136 |
granulocyte monocyte progenitor cell | 1.32e-12 | 67 |
myeloid lineage restricted progenitor cell | 3.63e-11 | 66 |
myeloid cell | 8.47e-10 | 108 |
common myeloid progenitor | 8.47e-10 | 108 |
nongranular leukocyte | 1.16e-08 | 115 |
hematopoietic stem cell | 3.15e-08 | 168 |
hematopoietic lineage restricted progenitor cell | 7.12e-08 | 120 |
hematopoietic cell | 1.35e-07 | 177 |
hematopoietic oligopotent progenitor cell | 2.26e-07 | 161 |
hematopoietic multipotent progenitor cell | 2.26e-07 | 161 |
granulocyte | 6.31e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 4.99e-12 | 98 |
blood island | 4.99e-12 | 98 |
lateral plate mesoderm | 2.00e-11 | 203 |
hemolymphoid system | 2.78e-11 | 108 |
bone marrow | 6.80e-11 | 76 |
bone element | 1.75e-09 | 82 |
skeletal element | 1.61e-08 | 90 |
immune system | 8.63e-08 | 93 |
skeletal system | 1.06e-07 | 100 |