FFCP PHASE1:Hg19::chr16:838330..838397,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr16:838330..838397,-
|short_description=p1@RPUSD1
|description=CAGE_peak_1_at_RPUSD1_5end
|association_with_transcript=0bp_to_ENST00000007264,NM_058192,uc002c...") |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=113000 | |EntrezGene=113000 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14173 | |HGNC=14173 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UJJ7 | |UniProt=Q9UJJ7 | ||
|association_with_transcript=0bp_to_ENST00000007264,NM_058192,uc002ckb.2,uc002ckc.2,uc002ckd.2_5end | |||
|cluster_id=chr16:838330..838397,- | |||
|coexpression_cluster_id=C534 | |||
|description=CAGE_peak_1_at_RPUSD1_5end | |||
|id=chr16:838330..838397,- | |||
|ontology_enrichment_celltype=CL:0000548!2.40e-33!679;CL:0000004!2.40e-33!679;CL:0000255!2.40e-33!679;CL:0000012!2.56e-33!682;CL:0000003!1.09e-28!722;CL:0002321!5.11e-26!248;CL:0000220!2.53e-25!246;CL:0000144!5.15e-24!625;CL:0000066!4.39e-23!254;CL:0002371!1.34e-16!591;CL:0000063!2.19e-14!578;CL:0000222!6.94e-14!119;CL:0000076!6.88e-12!62;CL:0000213!3.65e-09!57;CL:0000215!3.65e-09!57;CL:0000115!8.74e-09!35;CL:0000071!2.35e-08!18;CL:0002546!2.35e-08!18;CL:0002078!7.87e-08!44;CL:0000183!8.32e-08!59;CL:0002076!9.54e-08!43;CL:0002139!4.19e-07!24;CL:0000393!8.10e-07!60;CL:0000211!8.10e-07!60;CL:0000192!9.14e-07!42;CL:0000514!9.14e-07!42 | |||
|ontology_enrichment_celltype_v019=CL:0000071;1.89e-08;18!CL:0000115;5.32e-08;36!CL:0002139;3.01e-07;24!CL:1000449;3.12e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,3.53e-26,250;CL:0000066,2.47e-23,253;CL:0000222,5.64e-14,121;CL:0000076,6.06e-12,63;CL:0000213,1.50e-09,58;CL:0000215,1.50e-09,58;CL:0000115,3.26e-09,36;CL:0000071,2.35e-08,18;CL:0002546,2.35e-08,18;CL:0002078,3.21e-08,45;CL:0002076,1.09e-07,42;CL:1000449,3.64e-07,15;CL:0002139,4.19e-07,24 | |||
|ontology_enrichment_development_v019=CL:0002546;1.89e-08;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001637!4.72e-10!42;UBERON:0003509!4.72e-10!42;UBERON:0004572!4.72e-10!42;UBERON:0000055!4.33e-09!69;UBERON:0002049!7.92e-09!79;UBERON:0007798!7.92e-09!79;UBERON:0001981!1.08e-08!60;UBERON:0007500!1.08e-08!60;UBERON:0004537!1.08e-08!60;UBERON:0006965!1.08e-08!60;UBERON:0001986!2.35e-08!18;UBERON:0004638!2.35e-08!18;UBERON:0004852!2.35e-08!18;UBERON:0000487!3.87e-08!22;UBERON:0003914!6.22e-08!118;UBERON:0004872!1.07e-07!84;UBERON:0004573!2.76e-07!33;UBERON:0004571!2.76e-07!33 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;1.89e-08;18!UBERON:0001986;1.89e-08;18!UBERON:0004852;1.89e-08;18!UBERON:0003914;2.75e-08;74!UBERON:0000487;3.11e-08;22!UBERON:0000490;8.72e-08;33!UBERON:0001637;1.46e-07;42!UBERON:0003509;1.46e-07;42!UBERON:0004572;1.46e-07;42!UBERON:0006555;3.12e-07;15!UBERON:0004819;3.12e-07;15!UBERON:0001285;3.12e-07;15!UBERON:0007684;3.12e-07;15!UBERON:0000353;3.35e-07;15!UBERON:0007500;8.78e-07;56!UBERON:0001981;8.78e-07;56!UBERON:0004537;8.78e-07;56 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,4.72e-10,42;UBERON:0003509,4.72e-10,42;UBERON:0004572,4.72e-10,42;UBERON:0000055,1.02e-09,68;UBERON:0002049,2.13e-09,78;UBERON:0007798,2.13e-09,78;UBERON:0007500,2.35e-09,59;UBERON:0001981,2.35e-09,59;UBERON:0004537,2.35e-09,59;UBERON:0006965,2.35e-09,59;UBERON:0004638,2.35e-08,18;UBERON:0001986,2.35e-08,18;UBERON:0004852,2.35e-08,18;UBERON:0004872,3.35e-08,83;UBERON:0000487,3.87e-08,22;UBERON:0003914,3.99e-08,117;UBERON:0004573,2.76e-07,33;UBERON:0004571,2.76e-07,33;UBERON:0000353,3.30e-07,15;UBERON:0004211,3.64e-07,15;UBERON:0009773,3.64e-07,15;UBERON:0001231,3.64e-07,15;UBERON:0001285,3.64e-07,15;UBERON:0007684,3.64e-07,15;UBERON:0004208,3.64e-07,15;UBERON:0007503,4.66e-07,78;UBERON:0000490,5.64e-07,148 | |||
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| ||
|short_description=p1@RPUSD1 | |||
}} | }} |
Latest revision as of 02:43, 18 September 2015
Short description: | p1@RPUSD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RPUSD1_5end |
Coexpression cluster: | C534_Mesenchymal_Alveolar_Renal_Placental_Fibroblast_Smooth_Tracheal |
Association with transcript: | 0bp_to_ENST00000007264, NM_058192, uc002ckb.2, uc002ckc.2, uc002ckd.2_5end |
EntrezGene: | RPUSD1 |
HGNC: | 14173 |
UniProt: | Q9UJJ7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 3.53e-26 | 250 |
epithelial cell | 2.47e-23 | 253 |
mesodermal cell | 5.64e-14 | 121 |
squamous epithelial cell | 6.06e-12 | 63 |
lining cell | 1.50e-09 | 58 |
barrier cell | 1.50e-09 | 58 |
endothelial cell | 3.26e-09 | 36 |
blood vessel endothelial cell | 2.35e-08 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.35e-08 | 18 |
meso-epithelial cell | 3.21e-08 | 45 |
endo-epithelial cell | 1.09e-07 | 42 |
epithelial cell of nephron | 3.64e-07 | 15 |
endothelial cell of vascular tree | 4.19e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
artery | 4.72e-10 | 42 |
arterial blood vessel | 4.72e-10 | 42 |
arterial system | 4.72e-10 | 42 |
vessel | 1.02e-09 | 68 |
vasculature | 2.13e-09 | 78 |
vascular system | 2.13e-09 | 78 |
epithelial tube open at both ends | 2.35e-09 | 59 |
blood vessel | 2.35e-09 | 59 |
blood vasculature | 2.35e-09 | 59 |
vascular cord | 2.35e-09 | 59 |
blood vessel endothelium | 2.35e-08 | 18 |
endothelium | 2.35e-08 | 18 |
cardiovascular system endothelium | 2.35e-08 | 18 |
splanchnic layer of lateral plate mesoderm | 3.35e-08 | 83 |
simple squamous epithelium | 3.87e-08 | 22 |
epithelial tube | 3.99e-08 | 117 |
systemic artery | 2.76e-07 | 33 |
systemic arterial system | 2.76e-07 | 33 |
parenchyma | 3.30e-07 | 15 |
nephron epithelium | 3.64e-07 | 15 |
renal tubule | 3.64e-07 | 15 |
nephron tubule | 3.64e-07 | 15 |
nephron | 3.64e-07 | 15 |
uriniferous tubule | 3.64e-07 | 15 |
nephrogenic mesenchyme | 3.64e-07 | 15 |
epithelial vesicle | 4.66e-07 | 78 |
unilaminar epithelium | 5.64e-07 | 148 |