FFCP PHASE1:Hg19::chr6:33041386..33041439,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3113 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4938 | |||
|TSSclassifier=strong | |||
|UniProt=F6Q3Q2 | |||
|association_with_transcript=0bp_to_ENST00000448544,ENST00000463066,ENST00000479107_5end | |||
|cluster_id=chr6:33041386..33041439,- | |||
|coexpression_cluster_id=C187 | |||
|description=CAGE_peak_1_at_HLA-DPA1_5end | |||
|id=chr6:33041386..33041439,- | |||
|ontology_enrichment_celltype=CL:0000738!4.84e-54!140;CL:0002087!1.78e-48!119;CL:0002031!7.23e-47!124;CL:0000037!8.29e-46!172;CL:0000566!8.29e-46!172;CL:0002032!2.68e-43!165;CL:0000837!2.68e-43!165;CL:0000988!6.81e-43!182;CL:0002009!5.14e-30!65;CL:0000557!1.42e-29!71;CL:0000766!1.74e-29!76;CL:0002194!1.32e-28!63;CL:0000576!1.32e-28!63;CL:0000040!1.32e-28!63;CL:0000559!1.32e-28!63;CL:0000839!2.66e-27!70;CL:0002057!4.63e-26!42;CL:0000763!2.52e-24!112;CL:0000049!2.52e-24!112;CL:0000860!8.25e-23!45;CL:0000542!2.19e-17!53;CL:0000051!2.19e-17!53;CL:0000838!5.22e-17!52;CL:0000945!4.59e-14!24;CL:0000826!4.59e-14!24;CL:0000236!7.49e-10!14;CL:0000134!3.74e-09!358;CL:0000451!1.02e-08!10;CL:0002320!6.31e-08!365;CL:0000990!1.12e-07!8;CL:0000219!3.02e-07!390;CL:0002393!7.59e-07!9;CL:0002397!7.59e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.46e-20;33!CL:0002057;2.46e-20;33!CL:0000473;4.49e-20;39!CL:0000234;4.49e-20;39!CL:0000576;1.42e-18;48!CL:0002087;2.56e-15;104!CL:0000945;3.89e-15;24!CL:0000766;1.06e-14;69!CL:0000738;2.39e-13;136!CL:0000542;1.71e-11;53!CL:0000236;5.75e-10;13!CL:0000451;2.47e-09;10!CL:0000988;1.84e-08;177!CL:0000990;3.33e-08;8!CL:0000763;1.06e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,1.87e-61,136;CL:0002087,2.41e-55,115;CL:0002031,5.86e-53,120;CL:0000037,8.43e-52,168;CL:0000988,5.69e-49,177;CL:0002032,7.03e-49,161;CL:0000837,7.03e-49,161;CL:0002009,1.23e-35,61;CL:0000557,6.87e-35,67;CL:0000766,1.28e-34,72;CL:0002194,4.60e-34,59;CL:0000576,4.60e-34,59;CL:0000040,4.60e-34,59;CL:0000559,4.60e-34,59;CL:0000473,7.57e-32,48;CL:0000234,7.57e-32,48;CL:0000839,8.46e-32,66;CL:0000860,3.67e-28,42;CL:0002057,3.67e-28,42;CL:0000763,5.34e-28,108;CL:0000049,5.34e-28,108;CL:0000542,8.85e-19,53;CL:0000051,8.85e-19,53;CL:0000838,2.27e-18,52;CL:0000945,3.92e-15,24;CL:0000826,3.92e-15,24;CL:0000236,1.47e-10,14;CL:0000134,4.16e-10,354;CL:0000451,2.48e-09,10;CL:0002320,7.74e-09,361;CL:0000990,3.34e-08,8;CL:0000219,6.80e-08,386;CL:0002393,2.67e-07,9;CL:0002397,2.67e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002057;2.15e-20;42!CL:0000051;1.71e-11;53!CL:0000049;3.13e-08;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.44e-38!102;UBERON:0003061!1.44e-38!102;UBERON:0002193!3.55e-34!112;UBERON:0007023!1.01e-29!115;UBERON:0002371!8.59e-29!80;UBERON:0001474!1.11e-23!86;UBERON:0002405!8.16e-23!115;UBERON:0004765!4.58e-16!101;UBERON:0001434!4.58e-16!101;UBERON:0001049!1.58e-09!57;UBERON:0005068!1.58e-09!57;UBERON:0006241!1.58e-09!57;UBERON:0007135!1.58e-09!57;UBERON:0000178!1.03e-07!15;UBERON:0000179!1.03e-07!15;UBERON:0000463!1.03e-07!15;UBERON:0002384!1.31e-07!375;UBERON:0003080!2.67e-07!42;UBERON:0002780!3.98e-07!41;UBERON:0001890!3.98e-07!41;UBERON:0006240!3.98e-07!41;UBERON:0002616!6.15e-07!59 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;1.34e-08;114!UBERON:0000178;3.04e-08;15!UBERON:0000179;3.04e-08;15!UBERON:0000463;3.04e-08;15!UBERON:0002390;7.11e-08;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.49e-43,98;UBERON:0003061,1.49e-43,98;UBERON:0002193,9.74e-39,108;UBERON:0002371,6.96e-33,76;UBERON:0002405,3.31e-31,93;UBERON:0007023,3.84e-31,114;UBERON:0001474,1.37e-27,82;UBERON:0004765,7.97e-22,90;UBERON:0001434,5.16e-18,100;UBERON:0003081,3.21e-10,203;UBERON:0001049,5.90e-10,56;UBERON:0005068,5.90e-10,56;UBERON:0006241,5.90e-10,56;UBERON:0007135,5.90e-10,56;UBERON:0000073,3.72e-09,53;UBERON:0002616,3.72e-09,53;UBERON:0000178,3.04e-08,15;UBERON:0000179,3.04e-08,15;UBERON:0000463,3.04e-08,15;UBERON:0002384,3.32e-08,371;UBERON:0002780,1.98e-07,41;UBERON:0001890,1.98e-07,41;UBERON:0003080,1.98e-07,41;UBERON:0006240,1.98e-07,41 | |||
|phase1_expression=1.99846217197612,1.07050261945492,3.24195129420734,1.0007329835313,0,3.48935409640147,0,5.68547886084148,2.87304191019822,0,0,0,0.263766978228454,0,0,47.0627602516243,0,0,0,10.0959267622966,0,68.0196745607451,22.3264069962224,5.88560027813402,0.753255837568817,1110.66885254647,1072.47999998464,1126.90225606795,1741.03028933325,753.073279066731,1539.80116250169,0,0,0.369754010166788,1046.81428144162,402.623266404378,803.290802020142,1151.75645433777,866.753101965952,775.81386280917,1497.77060719085,1851.37619496449,1888.80163746149,1320.94299931235,2009.92214448078,1601.53997196196,1704.16969859248,2080.92068127846,1989.24402025925,2091.81138457436,2829.80732502697,3146.39606866763,1766.82161377517,2068.77841088616,2165.46952064352,1664.8152509148,2323.5229615925,2416.67635172244,1921.28859241216,2879.69615995379,2156.48412532017,1844.8583219443,2945.28036844102,2336.99030717076,1872.43000763162,1910.95343675976,2018.56690899466,1673.56735927517,2412.37998061185,2954.202665679,1683.6160168234,2552.16401739382,2580.11784480553,5970.07439117548,5375.48712031616,5679.23338953089,1856.11830106469,1905.44441637303,1355.72032378987,3400.77205832058,2749.42631224582,3175.98164150569,3111.61360207619,2922.38770886367,3225.36055450925,3906.71518759637,4035.59115333597,2782.37656181965,3214.66121635278,2939.43961772346,2813.05049333889,3393.64371737466,2945.79749593301,568.336712889811,562.190088670481,510.438356294099,29.1130459768473,42.4451623769098,82.4462010988032,6.8546463110178,20.2071805312826,12.7830907548378,7.79306913631645,157.534386035635,161.738643203686,184.316200293573,211.768621464242,69.0412213321389,114.452225852693,12.9905944636904,28.1877018141565,8.40428948631652,17.9426741426093,21.6708070752668,8.36284190439814,46.6834491913973,76.2608782267823,87.6249985980706,68.5683365372853,145.265828931788,149.09811093312,195.793121156365,332.018137566489,279.778731983559,233.620458652887,243.643792353293,164.225599384209,126.407428001907,101.894714593516,55.7573954948776,0,1.34140171940727,0.383587685530591,1.44575660953827,0,0.869079113764942,0,4.86634870302636,0.0945348171640679,0,8.95914814069886,501.453390542993,0.728590576585084,0.370784442784429,6545.47183522765,6945.51283165587,6257.40049589935,1891.70763198997,1943.63870683087,1229.52432940086,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0.112611480483322,0,0,0,55.3477753231466,38.7780264148325,0,0,0,0.529636723252875,1.72101972449288,32.2748227800505,1.12135520028461,0,0,0,0,0.163461903113459,0.756787138224657,0,0.234321431833797,0.624320153660641,0,3.58676833324323,0,0,0,0,0,0,0,0,1.82032272387605,3.59309070908119,0,0.125118519871964,0,0,0,0.150238058906597,0,0,0,0.635795703478686,0,0.103052529238439,0,0,1.5189869901714,0.292311015483596,0,0.0920498986422993,4.0411514204703,0,0.10075209822764,0.339121184620975,0,0.272746120590835,0.286804595389004,1.21973706129595,0.530119073285941,0.69716365721711,1.14027160516907,0,0.36497735907583,4.69348596989448,2.57296375277154,0,0,0.721879481669586,0,0,0,0.110293972732394,0,0,1.75280700608214,0,0,0,0,0,1.47008711385542,7.60530208930985,110.076648267894,174.283022471014,0,0.245976877086227,0,0,0,0.201057944823262,0,0,0,0,1.27523445472584,0,0.144366447761074,0,0.190254152234598,0,0.858486162094873,2779.05134770845,1179.84950483204,1829.64960777424,0,0,0,0,0,0,14.7798971368783,5.54705134283324,24.2573895182703,16.4296746895336,12.7504857760644,26.6056177084188,20.2453865545887,9.37739577680376,6.84289784090821,10.5912317484423,2.10240140490742,46.5897085187842,0,0.43596006883328,0,0,0,1.690605505112,0,0,0.771622122786426,0,0.799266537048298,0.714889968290738,1.08524321078289,0,2.28015329005615,0.355391948742546,0,1.80863626235752,0,1.49959486773086,2428.82689940457,1328.47000683797,1123.74489744456,0,0,7.13184525203592,0.144781306667579,0,0.358121926479791,164.092650806524,364.506906373565,94.4448777884686,222.931854017923,7.6228387266739,0,6.95959931499926,3.35032530668698,7.01732626818479,9.73709131131337,14.9580729602012,7.45947924184864,0.12269149171914,0,0,1.45579603071565,0.535286966391485,0.315404830067869,0.234282829985426,0.601892199455438,0,2.0694614258501,0,0.368738337083406,3.82287903659565,0.587403472388222,0,1052.86278901774,906.431071839828,1074.85323463849,0,1.66435439510497,0.30239029332968,1.73675465473144,0.306923946576125,1.40330047216537,2.43464383585832,4.09365799253363,0.482561763430822,4.45254199334973,3.54682295746108,63.3895359367864,56.6677376495283,0.519254429183621,39.6277390548461,0.120859449591622,0.200506470303285,0,0.114814448164607,0,1.31124414959424,0.451199612907412,0.15403067420883,0,0,0.105551628892876,0,0.170093705276516,0,0,0.270946437543853,0,0,0,0,1.53481913652154,0.522870902049801,0.256450125116389,0.328014645699706,0,276.046870204248,0,0.165018999841176,0,0,0,2.80345083047154,0.308097234229289,0,0.137836572484531,1.82614416276065,0.725083469571143,33.3236113196955,0.890320356467374,0.495854746082934,0.384380134730212,0.12761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| |||
|short_description=p1@HLA-DPA1 | |||
}} |
Latest revision as of 05:32, 18 September 2015
Short description: | p1@HLA-DPA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HLA-DPA1_5end |
Coexpression cluster: | C187_migratory_immature_Dendritic_CD19_CD14_Monocytederived_Macrophage |
Association with transcript: | 0bp_to_ENST00000448544, ENST00000463066, ENST00000479107_5end |
EntrezGene: | HLA-DPA1 |
HGNC: | 4938 |
UniProt: | F6Q3Q2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.49e-43 | 98 |
blood island | 1.49e-43 | 98 |
hemolymphoid system | 9.74e-39 | 108 |
bone marrow | 6.96e-33 | 76 |
immune system | 3.31e-31 | 93 |
adult organism | 3.84e-31 | 114 |
bone element | 1.37e-27 | 82 |
skeletal element | 7.97e-22 | 90 |
skeletal system | 5.16e-18 | 100 |
lateral plate mesoderm | 3.21e-10 | 203 |
neural tube | 5.90e-10 | 56 |
neural rod | 5.90e-10 | 56 |
future spinal cord | 5.90e-10 | 56 |
neural keel | 5.90e-10 | 56 |
regional part of nervous system | 3.72e-09 | 53 |
regional part of brain | 3.72e-09 | 53 |
blood | 3.04e-08 | 15 |
haemolymphatic fluid | 3.04e-08 | 15 |
organism substance | 3.04e-08 | 15 |
connective tissue | 3.32e-08 | 371 |
regional part of forebrain | 1.98e-07 | 41 |
forebrain | 1.98e-07 | 41 |
anterior neural tube | 1.98e-07 | 41 |
future forebrain | 1.98e-07 | 41 |