FFCP PHASE1:Hg19::chr2:173792874..173792887,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=11069 | |EntrezGene=11069 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16626 | |HGNC=16626 | ||
|TSSclassifier=strong | |||
|UniProt=B7Z805 | |UniProt=B7Z805 | ||
|association_with_transcript=0bp_to_ENST00000466030,ENST00000539767,uc010zeg.1_5end | |association_with_transcript=0bp_to_ENST00000466030,ENST00000539767,uc010zeg.1_5end | ||
|cluster_id=chr2:173792874..173792887,+ | |||
|coexpression_cluster_id=C24 | |coexpression_cluster_id=C24 | ||
|description=CAGE_peak_6_at_RAPGEF4_5end | |description=CAGE_peak_6_at_RAPGEF4_5end | ||
|id=chr2:173792874..173792887,+ | |id=chr2:173792874..173792887,+ | ||
|ontology_enrichment_celltype=CL:0002139!3.10e-13!24;CL:0000115!9.15e-10!35;CL:0005020!1.63e-09!6;CL:0002138!1.63e-09!6;CL:0005022!1.63e-09!6;CL:0002078!2.04e-09!44;CL:0000213!1.67e-07!57;CL:0000215!1.67e-07!57;CL:0000071!6.50e-07!18;CL:0002546!6.50e-07!18 | |ontology_enrichment_celltype=CL:0002139!3.10e-13!24;CL:0000115!9.15e-10!35;CL:0005020!1.63e-09!6;CL:0002138!1.63e-09!6;CL:0005022!1.63e-09!6;CL:0002078!2.04e-09!44;CL:0000213!1.67e-07!57;CL:0000215!1.67e-07!57;CL:0000071!6.50e-07!18;CL:0002546!6.50e-07!18 | ||
|ontology_enrichment_celltype_v019=CL:0002138;4.03e-17;6!CL:0002139;1.29e-09;24!CL:0000746;7.14e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0005020,2.69e-17,6;CL:0002138,2.69e-17,6;CL:0005022,2.69e-17,6;CL:0002139,1.15e-09,24;CL:0000115,1.30e-07,36;CL:0000746,7.05e-07,3;CL:0000513,7.05e-07,3 | |||
|ontology_enrichment_development_v019=CL:0005022;4.03e-17;6!CL:0000513;7.14e-07;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.62e-29!115;UBERON:0000477!5.50e-16!286;UBERON:0004111!3.98e-14!241;UBERON:0000025!1.77e-10!194;UBERON:0005743!1.71e-09!86;UBERON:0001017!1.83e-09!82;UBERON:0002616!2.85e-09!59;UBERON:0000955!3.95e-09!69;UBERON:0006238!3.95e-09!69;UBERON:0003103!1.73e-08!69;UBERON:0000073!2.59e-08!94;UBERON:0001016!2.59e-08!94;UBERON:0000119!3.06e-08!312;UBERON:0002780!3.22e-08!41;UBERON:0001890!3.22e-08!41;UBERON:0006240!3.22e-08!41;UBERON:0001049!3.96e-08!57;UBERON:0005068!3.96e-08!57;UBERON:0006241!3.96e-08!57;UBERON:0007135!3.96e-08!57;UBERON:0000483!4.84e-08!309;UBERON:0003080!6.69e-08!42;UBERON:0001009!1.24e-07!113;UBERON:0000468!2.84e-07!659;UBERON:0003075!2.93e-07!86;UBERON:0007284!2.93e-07!86;UBERON:0006914!3.12e-07!25;UBERON:0007100!3.25e-07!27;UBERON:0001986!6.50e-07!18;UBERON:0004638!6.50e-07!18;UBERON:0004852!6.50e-07!18;UBERON:0001473!7.92e-07!8;UBERON:0004536!7.92e-07!8;UBERON:0006558!7.92e-07!8;UBERON:0002465!8.25e-07!10 | |ontology_enrichment_uberon=UBERON:0007023!1.62e-29!115;UBERON:0000477!5.50e-16!286;UBERON:0004111!3.98e-14!241;UBERON:0000025!1.77e-10!194;UBERON:0005743!1.71e-09!86;UBERON:0001017!1.83e-09!82;UBERON:0002616!2.85e-09!59;UBERON:0000955!3.95e-09!69;UBERON:0006238!3.95e-09!69;UBERON:0003103!1.73e-08!69;UBERON:0000073!2.59e-08!94;UBERON:0001016!2.59e-08!94;UBERON:0000119!3.06e-08!312;UBERON:0002780!3.22e-08!41;UBERON:0001890!3.22e-08!41;UBERON:0006240!3.22e-08!41;UBERON:0001049!3.96e-08!57;UBERON:0005068!3.96e-08!57;UBERON:0006241!3.96e-08!57;UBERON:0007135!3.96e-08!57;UBERON:0000483!4.84e-08!309;UBERON:0003080!6.69e-08!42;UBERON:0001009!1.24e-07!113;UBERON:0000468!2.84e-07!659;UBERON:0003075!2.93e-07!86;UBERON:0007284!2.93e-07!86;UBERON:0006914!3.12e-07!25;UBERON:0007100!3.25e-07!27;UBERON:0001986!6.50e-07!18;UBERON:0004638!6.50e-07!18;UBERON:0004852!6.50e-07!18;UBERON:0001473!7.92e-07!8;UBERON:0004536!7.92e-07!8;UBERON:0006558!7.92e-07!8;UBERON:0002465!8.25e-07!10 | ||
|ontology_enrichment_uberon_v019=UBERON:0001473;8.87e-13;8!UBERON:0004536;8.87e-13;8!UBERON:0006558;8.87e-13;8!UBERON:0001905;3.34e-10;2!UBERON:0002757;3.34e-10;2!UBERON:0010134;3.34e-10;2!UBERON:0005408;3.34e-10;2!UBERON:0001899;3.34e-10;2!UBERON:0002465;3.63e-10;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001473,6.58e-13,8;UBERON:0004536,6.58e-13,8;UBERON:0006558,6.58e-13,8;UBERON:0002465,2.87e-10,10;UBERON:0001905,3.36e-10,2;UBERON:0002757,3.36e-10,2;UBERON:0010134,3.36e-10,2;UBERON:0005408,3.36e-10,2;UBERON:0001899,3.36e-10,2 | |||
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| ||
|short_description=p6@RAPGEF4 | |short_description=p6@RAPGEF4 | ||
}} | }} |
Latest revision as of 05:53, 18 September 2015
Short description: | p6@RAPGEF4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_RAPGEF4_5end |
Coexpression cluster: | C24_pineal_eye_retina_retinoblastoma_medulloblastoma_small_cerebral |
Association with transcript: | 0bp_to_ENST00000466030, ENST00000539767, uc010zeg.1_5end |
EntrezGene: | RAPGEF4 |
HGNC: | 16626 |
UniProt: | B7Z805 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphangioblast | 2.69e-17 | 6 |
endothelial cell of lymphatic vessel | 2.69e-17 | 6 |
vascular lymphangioblast | 2.69e-17 | 6 |
endothelial cell of vascular tree | 1.15e-09 | 24 |
endothelial cell | 1.30e-07 | 36 |
cardiac muscle cell | 7.05e-07 | 3 |
cardiac muscle myoblast | 7.05e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
lymphatic vessel | 6.58e-13 | 8 |
lymph vasculature | 6.58e-13 | 8 |
lymphatic part of lymphoid system | 6.58e-13 | 8 |
lymphoid system | 2.87e-10 | 10 |
pineal body | 3.36e-10 | 2 |
regional part of epithalamus | 3.36e-10 | 2 |
secretory circumventricular organ | 3.36e-10 | 2 |
circumventricular organ | 3.36e-10 | 2 |
epithalamus | 3.36e-10 | 2 |