FFCP PHASE1:Hg19::chr2:74669009..74669077,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:74669009..74669077,- to FFCP PHASE1:Hg19::chr2:74669009..74669077,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6242 | |EntrezGene=6242 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10466 | |HGNC=10466 | ||
|TSSclassifier=strong | |||
|UniProt=Q9BST9 | |UniProt=Q9BST9 | ||
|association_with_transcript=0bp_to_ENST00000272430,ENST00000472518,NM_001015055,uc002sle.2,uc010ffe.1,uc010ffg.1_5end | |||
|cluster_id=chr2:74669009..74669077,- | |||
|coexpression_cluster_id=C226 | |||
|description=CAGE_peak_1_at_RTKN_5end | |||
|id=chr2:74669009..74669077,- | |||
|ontology_enrichment_celltype=CL:0000066!1.82e-25!254;CL:0000223!1.92e-16!59;CL:0002076!1.24e-14!43;CL:0002368!6.88e-09!13;CL:0002251!2.03e-07!21 | |||
|ontology_enrichment_celltype_v019=CL:0002076;2.01e-14;42!CL:0002368;3.87e-10;13!CL:0002251;8.91e-10;20!CL:1000497;7.67e-08;17!CL:0002518;7.67e-08;17!CL:1000507;8.04e-08;10!CL:1000494;8.04e-08;10!CL:0002202;1.70e-07;9!CL:0002632;1.70e-07;9!CL:1000449;9.69e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.51e-34,253;CL:0000223,1.97e-21,58;CL:0002076,8.13e-19,42;CL:0002368,3.72e-10,13;CL:0002251,9.07e-10,20;CL:1000497,7.59e-08,17;CL:0002518,7.59e-08,17;CL:1000507,7.80e-08,10;CL:1000494,7.80e-08,10;CL:0002202,1.66e-07,9;CL:0002632,1.66e-07,9;CL:1000449,9.45e-07,15 | |||
|ontology_enrichment_development_v019=CL:0000223;1.67e-11;58!UBERON:0003104;7.76e-08;31 | |||
|ontology_enrichment_disease=DOID:305!4.91e-13!106;DOID:1749!8.84e-07!14;DOID:7!9.35e-07!39 | |||
|ontology_enrichment_disease_v019=DOID:299;7.07e-08;25!DOID:1749;7.46e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,4.01e-17,106;DOID:0050687,1.16e-10,143;DOID:299,6.49e-08,25;DOID:1749,6.93e-08,14;DOID:7,1.35e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0004119!6.16e-16!169;UBERON:0000925!6.16e-16!169;UBERON:0006595!6.16e-16!169;UBERON:0000466!5.18e-14!126;UBERON:0000481!5.68e-14!347;UBERON:0005177!1.24e-13!107;UBERON:0001007!4.50e-12!155;UBERON:0001555!4.50e-12!155;UBERON:0007026!4.50e-12!155;UBERON:0000064!1.34e-11!219;UBERON:0000464!1.50e-11!104;UBERON:0000062!2.35e-11!511;UBERON:0001008!4.76e-11!45;UBERON:0006554!7.60e-11!44;UBERON:0005911!1.26e-10!82;UBERON:0000475!1.43e-10!365;UBERON:0004921!2.47e-10!129;UBERON:0004185!2.47e-10!129;UBERON:0000119!3.25e-10!312;UBERON:0007023!3.98e-10!115;UBERON:0009569!4.00e-10!113;UBERON:0000483!4.40e-10!309;UBERON:0004111!8.00e-10!241;UBERON:0000077!1.31e-09!130;UBERON:0000489!2.70e-09!32;UBERON:0005172!2.93e-09!55;UBERON:0005173!2.93e-09!55;UBERON:0003103!3.80e-09!69;UBERON:0002113!1.36e-08!27;UBERON:0003918!1.36e-08!27;UBERON:0005095!1.36e-08!27;UBERON:0007687!1.36e-08!27;UBERON:0000468!1.06e-07!659;UBERON:0005157!1.15e-07!51;UBERON:0002530!1.25e-07!59;UBERON:0004121!1.47e-07!169;UBERON:0001048!1.54e-07!168;UBERON:0001004!1.81e-07!72;UBERON:0002365!2.16e-07!31;UBERON:0002330!2.16e-07!31;UBERON:0000467!2.66e-07!625;UBERON:0002417!2.74e-07!61;UBERON:0000916!2.74e-07!61;UBERON:0001041!2.92e-07!98;UBERON:0000922!3.09e-07!612;UBERON:0000480!3.78e-07!626;UBERON:0000477!4.91e-07!286;UBERON:0002553!5.92e-07!70;UBERON:0000153!8.64e-07!129;UBERON:0007811!8.64e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;2.84e-14;30!UBERON:0001008;2.84e-14;30!UBERON:0000489;2.76e-11;29!UBERON:0002113;1.24e-10;24!UBERON:0011143;1.24e-10;24!UBERON:0002365;1.25e-08;31!UBERON:0002330;1.25e-08;31!UBERON:0004211;8.04e-08;10!UBERON:0009773;8.04e-08;10!UBERON:0001231;8.04e-08;10!UBERON:0004810;8.04e-08;10!UBERON:0004921;2.91e-07;33!UBERON:0004807;7.22e-07;22!UBERON:0005172;8.56e-07;52!UBERON:0005173;8.56e-07;52!UBERON:0006555;9.69e-07;15!UBERON:0004819;9.69e-07;15!UBERON:0001285;9.69e-07;15!UBERON:0007684;9.69e-07;15 | |||
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| ||
|short_description=p1@RTKN | |||
}} | }} |
Latest revision as of 11:03, 18 September 2015
Short description: | p1@RTKN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RTKN_5end |
Coexpression cluster: | C226_Corneal_Keratinocyte_Esophageal_Urothelial_Mammary_Bronchial_Tracheal |
Association with transcript: | 0bp_to_ENST00000272430, ENST00000472518, NM_001015055, uc002sle.2, uc010ffe.1, uc010ffg.1_5end |
EntrezGene: | RTKN |
HGNC: | 10466 |
UniProt: | Q9BST9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.51e-34 | 253 |
endodermal cell | 1.97e-21 | 58 |
endo-epithelial cell | 8.13e-19 | 42 |
respiratory epithelial cell | 3.72e-10 | 13 |
epithelial cell of alimentary canal | 9.07e-10 | 20 |
kidney cell | 7.59e-08 | 17 |
kidney epithelial cell | 7.59e-08 | 17 |
kidney tubule cell | 7.80e-08 | 10 |
nephron tubule epithelial cell | 7.80e-08 | 10 |
epithelial cell of tracheobronchial tree | 1.66e-07 | 9 |
epithelial cell of lower respiratory tract | 1.66e-07 | 9 |
epithelial cell of nephron | 9.45e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 4.01e-17 | 106 |
cell type cancer | 1.16e-10 | 143 |
adenocarcinoma | 6.49e-08 | 25 |
squamous cell carcinoma | 6.93e-08 | 14 |
disease of anatomical entity | 1.35e-07 | 39 |