FFCP PHASE1:Hg19::chr7:38357069..38357141,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=445347 | |EntrezGene=445347 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-132bp_to_uc003tgg.1,uc003tgh.1,uc003tgi.1,uc003tgj.1_5end | |association_with_transcript=-132bp_to_uc003tgg.1,uc003tgh.1,uc003tgi.1,uc003tgj.1_5end | ||
|cluster_id=chr7:38357069..38357141,- | |||
|coexpression_cluster_id=C1996 | |||
|description=CAGE_peak_1_at_TARP_5end | |description=CAGE_peak_1_at_TARP_5end | ||
|id=chr7:38357069..38357141,- | |id=chr7:38357069..38357141,- | ||
|ontology_enrichment_celltype=CL:0000037!2.34e-24!172;CL:0000566!2.34e-24!172;CL:0000738!5.11e-22!140;CL:0000988!9.98e-22!182;CL:0002032!4.00e-20!165;CL:0000837!4.00e-20!165;CL:0002087!1.54e-19!119;CL:0002031!1.89e-16!124;CL:0000791!3.06e-16!18;CL:0000789!3.06e-16!18;CL:0002420!3.06e-16!18;CL:0002419!3.06e-16!18;CL:0000790!3.06e-16!18;CL:0000625!3.65e-16!11;CL:0000084!2.16e-13!25;CL:0000827!2.16e-13!25;CL:0000763!5.47e-12!112;CL:0000049!5.47e-12!112;CL:0000766!2.79e-11!76;CL:0002057!2.69e-10!42;CL:0000557!1.11e-09!71;CL:0002194!1.65e-09!63;CL:0000576!1.65e-09!63;CL:0000040!1.65e-09!63;CL:0000559!1.65e-09!63;CL:0000860!3.60e-09!45;CL:0000839!4.43e-09!70;CL:0002009!5.67e-09!65;CL:0000838!1.36e-08!52;CL:0000542!2.64e-08!53;CL:0000051!2.64e-08!53 | |ontology_enrichment_celltype=CL:0000037!2.34e-24!172;CL:0000566!2.34e-24!172;CL:0000738!5.11e-22!140;CL:0000988!9.98e-22!182;CL:0002032!4.00e-20!165;CL:0000837!4.00e-20!165;CL:0002087!1.54e-19!119;CL:0002031!1.89e-16!124;CL:0000791!3.06e-16!18;CL:0000789!3.06e-16!18;CL:0002420!3.06e-16!18;CL:0002419!3.06e-16!18;CL:0000790!3.06e-16!18;CL:0000625!3.65e-16!11;CL:0000084!2.16e-13!25;CL:0000827!2.16e-13!25;CL:0000763!5.47e-12!112;CL:0000049!5.47e-12!112;CL:0000766!2.79e-11!76;CL:0002057!2.69e-10!42;CL:0000557!1.11e-09!71;CL:0002194!1.65e-09!63;CL:0000576!1.65e-09!63;CL:0000040!1.65e-09!63;CL:0000559!1.65e-09!63;CL:0000860!3.60e-09!45;CL:0000839!4.43e-09!70;CL:0002009!5.67e-09!65;CL:0000838!1.36e-08!52;CL:0000542!2.64e-08!53;CL:0000051!2.64e-08!53 | ||
|ontology_enrichment_celltype_v019=CL:0000625;3.73e-31;11!CL:0000791;2.13e-29;18!CL:0000789;2.13e-29;18!CL:0002419;2.13e-29;18!CL:0000084;3.10e-23;25!CL:0000623;2.11e-10;3!CL:0000226;5.96e-10;3!CL:0000842;5.96e-10;3!CL:0000767;7.53e-10;3!CL:0000542;6.67e-08;53!CL:0002087;9.55e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000625,3.54e-31,11;CL:0000791,1.62e-29,18;CL:0000789,1.62e-29,18;CL:0002420,1.62e-29,18;CL:0002419,1.62e-29,18;CL:0000790,1.62e-29,18;CL:0000084,2.60e-23,25;CL:0000827,2.60e-23,25;CL:0000037,3.07e-20,168;CL:0000738,4.56e-19,136;CL:0000988,1.20e-18,177;CL:0002087,8.25e-16,115;CL:0002032,1.79e-14,161;CL:0000837,1.79e-14,161;CL:0000838,3.98e-14,52;CL:0000542,9.06e-14,53;CL:0000051,9.06e-14,53;CL:0002031,2.68e-11,120;CL:0000623,2.11e-10,3;CL:0000825,2.11e-10,3;CL:0000226,6.14e-10,3;CL:0000842,6.14e-10,3;CL:0000767,7.76e-10,3;CL:0000893,3.17e-07,2;CL:0002489,3.17e-07,2;CL:0000809,3.17e-07,2;CL:0000808,3.17e-07,2;CL:0000894,3.17e-07,2;CL:0000806,3.17e-07,2;CL:0000807,3.17e-07,2;CL:0000805,3.17e-07,2;CL:0002425,3.17e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000790;2.13e-29;18!CL:0000051;6.67e-08;53!CL:0002425;3.16e-07;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.45e-20!102;UBERON:0003061!1.45e-20!102;UBERON:0002193!2.26e-19!112;UBERON:0007023!5.51e-19!115;UBERON:0000178!5.80e-13!15;UBERON:0000179!5.80e-13!15;UBERON:0000463!5.80e-13!15;UBERON:0002405!1.17e-09!115;UBERON:0002371!1.98e-08!80;UBERON:0004177!1.29e-07!7;UBERON:0001474!2.98e-07!86 | |ontology_enrichment_uberon=UBERON:0002390!1.45e-20!102;UBERON:0003061!1.45e-20!102;UBERON:0002193!2.26e-19!112;UBERON:0007023!5.51e-19!115;UBERON:0000178!5.80e-13!15;UBERON:0000179!5.80e-13!15;UBERON:0000463!5.80e-13!15;UBERON:0002405!1.17e-09!115;UBERON:0002371!1.98e-08!80;UBERON:0004177!1.29e-07!7;UBERON:0001474!2.98e-07!86 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;4.66e-26;15!UBERON:0000179;4.66e-26;15!UBERON:0000463;4.66e-26;15!UBERON:0002390;1.11e-22;32!UBERON:0002193;3.40e-15;42!UBERON:0004177;4.62e-09;5!UBERON:0005057;4.62e-09;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,4.79e-26,15;UBERON:0000179,4.79e-26,15;UBERON:0000463,4.79e-26,15;UBERON:0002193,6.39e-18,108;UBERON:0002390,1.09e-17,98;UBERON:0003061,1.09e-17,98;UBERON:0004177,2.57e-14,7;UBERON:0005057,2.57e-14,7;UBERON:0002370,5.05e-12,4;UBERON:0005058,5.05e-12,4;UBERON:0009113,5.05e-12,4;UBERON:0003295,5.05e-12,4;UBERON:0005562,5.05e-12,4;UBERON:0003351,5.30e-08,6;UBERON:0001042,5.98e-07,10;UBERON:0009145,5.98e-07,10 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,26.7487708257255,34.1608164306519,9.28896739896456,0,0,0,0,0,7.92721186204087,7.20194031091441,11.6315779532682,9.76548918221333,0.223915474239924,20.7291946252147,2.57575567634187,0.581592955118259,0.755751887377619,0,0.232429036905685,0.411167888021826,0,0.28769239232215,0.768482119587302,0.236482229888585,0,1.29096936716765,0,0,1.09162460023138,0.449446968890169,0.918251677112708,2.56743221660875,0,0.329851300186716,0.797854630486527,0,0.580418477257168,1.70215567407342,0,0.251248665256743,0,0.217188844705117,0,1.10483290796269,0.316462387440884,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0.426730222566507,0.400395987036012,0,0,0,0,0.587237189370939,0,1.32171328579026,5.04457706683382,0.526768169550154,0,1.96505381374582,0.205601498999509,0,0,0,0,0,0,0,0,0.25618263945135,0.260118695119756,0.328875809207352,1.38175008892924,0.289803085735052,0,0,0,0.679856056185397,43.3039157770171,1.03088233644789,4.80737414837055,9.875527844047,13.0216690771284,19.9594929334159,27.7058219103102,37.3720904570902,18.7396089828519,7.81364931745256,11.4957919568947,47.3775846578121,12.5696892018248,8.68946423296794,0,0,0,0,0,0,0,0,0,0,0.43917392846563,0.523916301990851,0,0,0.324547393654683,0.174129737299267,0,0.476981248610684,1.14398982156026,1.48583000531826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234004265139238,0,0,0,0,0,0,0,0,0,0.207328115540772,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.3468984311715,88.4668113306653,77.8415545242857,64.5565472487134,0,0,0,0,0,0,0,1.24324654030811,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0,35.1505644408909,11.2171384425681,30.3106264161782,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.721287081534056,0,0,0,0,0,0,0,0,0,0,0,0.170453254832202,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0.422215270595328,0,0,0,0,1.34060455107157,0,0.564862804660675,0,0,0,0,12.6861902308042,17.5866557642746,8.54470780761244,29.5407401567658,31.674895027637,3.24236655596359,3.7802200606668,3.17250070517708,0,0,0,0,0,0,0.318852545457645,9.38023045734238,0,2.11673582723883,0,0.561594356226918,0,2.0368386450493,0,0,0.321176150207399,0.403599414382095,0,0.343505344755765,0,0,0,0.19538809540204,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0.593929361665277,0,0,0,0,0,0,0.19924798825107,1.38141957765574,0,0,0,0,0,0,0.511572370226872,0.394573622547734,16.7638164642858,0,0,0.0927680981618513,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384751292518985,0,0,0,0,0.31900115973192,0,0.533034776018635,9.19739683761629,2.66866435871542,0,0,0,0,0,0,0,0,0,0,0,0.796118080530053,1.83309043480088,0,0,0,0.337005664903385,0,0.234264445725339,0,0,0,0,1.20990716048664,0,0.821425535170343,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.775912131907355,0,0,0,0,0.0633107959558787,0,0,0.426905989478705,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27746588066972,0,0,0,0,0,0,0,0.223171457441873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.472834243795189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293104467356165,0,0.129282956361551,0.13223260174269,0,0,1.17466153824464,0.471612915298998,1.65695622138878,1.9846640872478,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0.194860308839388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225630985047772,0,0,0,0,0,0,0,0,0,0,0.548257766857182,1.48863353516788,0,0,0,0,0,0.227662191351298,0.354809480650555,0,0,0.203909198930495,0,0,0,0.627944742804112,0,0,0,0,0,0.214429632529969,0,0,0,0,0,0,0,0.860454717640555,0,0,0.423387050190929,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0.198950775161368,0,0,0,0,1.15761237161917,0.874238242015829,0,0,0,0,0,0,0,5.35708332485165,2.2560260790752,0,0,0,0,0,0.917458566809082,0.286679166302903,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0.267964130156178,0,0,0.213233981900981,0,4.71499041802845,2.54506328613017,0,0.445530107947154,0,0,0,1.95320953742304,0.645499848534087,0,0,0,0,0,0,0.122241444182866,0,0,1.61019034872821,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,26.7487708257255,34.1608164306519,9.28896739896456,0,0,0,0,0,7.92721186204087,7.20194031091441,11.6315779532682,9.76548918221333,0.223915474239924,20.7291946252147,2.57575567634187,0.581592955118259,0.755751887377619,0,0.232429036905685,0.411167888021826,0,0.28769239232215,0.768482119587302,0.236482229888585,0,1.29096936716765,0,0,1.09162460023138,0.449446968890169,0.918251677112708,2.56743221660875,0,0.329851300186716,0.797854630486527,0,0.580418477257168,1.70215567407342,0,0.251248665256743,0,0.217188844705117,0,1.10483290796269,0.316462387440884,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0.426730222566507,0.400395987036012,0,0,0,0,0.587237189370939,0,1.32171328579026,5.04457706683382,0.526768169550154,0,1.96505381374582,0.205601498999509,0,0,0,0,0,0,0,0,0.25618263945135,0.260118695119756,0.328875809207352,1.38175008892924,0.289803085735052,0,0,0,0.679856056185397,43.3039157770171,1.03088233644789,4.80737414837055,9.875527844047,13.0216690771284,19.9594929334159,27.7058219103102,37.3720904570902,18.7396089828519,7.81364931745256,11.4957919568947,47.3775846578121,12.5696892018248,8.68946423296794,0,0,0,0,0,0,0,0,0,0,0.43917392846563,0.523916301990851,0,0,0.324547393654683,0.174129737299267,0,0.476981248610684,1.14398982156026,1.48583000531826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234004265139238,0,0,0,0,0,0,0,0,0,0.207328115540772,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.3468984311715,88.4668113306653,77.8415545242857,64.5565472487134,0,0,0,0,0,0,0,1.24324654030811,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0,35.1505644408909,11.2171384425681,30.3106264161782,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.721287081534056,0,0,0,0,0,0,0,0,0,0,0,0.170453254832202,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0.422215270595328,0,0,0,0,1.34060455107157,0,0.564862804660675,0,0,0,0,12.6861902308042,17.5866557642746,8.54470780761244,29.5407401567658,31.674895027637,3.24236655596359,3.7802200606668,3.17250070517708,0,0,0,0,0,0,0.318852545457645,9.38023045734238,0,2.11673582723883,0,0.561594356226918,0,2.0368386450493,0,0,0.321176150207399,0.403599414382095,0,0.343505344755765,0,0,0,0.19538809540204,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0.593929361665277,0,0,0,0,0,0,0.19924798825107,1.38141957765574,0,0,0,0,0,0,0.511572370226872,0.394573622547734,16.7638164642858,0,0,0.0927680981618513,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384751292518985,0,0,0,0,0.31900115973192,0,0.533034776018635,9.19739683761629,2.66866435871542,0,0,0,0,0,0,0,0,0,0,0,0.796118080530053,1.83309043480088,0,0,0,0.337005664903385,0,0.234264445725339,0,0,0,0,1.20990716048664,0,0.821425535170343,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.775912131907355,0,0,0,0,0.0633107959558787,0,0,0.426905989478705,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27746588066972,0,0,0,0,0,0,0,0.223171457441873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.472834243795189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293104467356165,0,0.129282956361551,0.13223260174269,0,0,1.17466153824464,0.471612915298998,1.65695622138878,1.9846640872478,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0.194860308839388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225630985047772,0,0,0,0,0,0,0,0,0,0,0.548257766857182,1.48863353516788,0,0,0,0,0,0.227662191351298,0.354809480650555,0,0,0.203909198930495,0,0,0,0.627944742804112,0,0,0,0,0,0.214429632529969,0,0,0,0,0,0,0,0.860454717640555,0,0,0.423387050190929,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0.198950775161368,0,0,0,0,1.15761237161917,0.874238242015829,0,0,0,0,0,0,0,5.35708332485165,2.2560260790752,0,0,0,0,0,0.917458566809082,0.286679166302903,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0.267964130156178,0,0,0.213233981900981,0,4.71499041802845,2.54506328613017,0,0.445530107947154,0,0,0,1.95320953742304,0.645499848534087,0,0,0,0,0,0,0.122241444182866,0,0,1.61019034872821,0 | ||
|short_description=p1@TARP | |short_description=p1@TARP | ||
}} | }} |
Latest revision as of 12:28, 18 September 2015
Short description: | p1@TARP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TARP_5end |
Coexpression cluster: | C1996_Natural_CD8_NK_CD4_Peripheral_blood_Whole |
Association with transcript: | -132bp_to_uc003tgg.1, uc003tgh.1, uc003tgi.1, uc003tgj.1_5end |
EntrezGene: | TARP |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
blood | 4.79e-26 | 15 |
haemolymphatic fluid | 4.79e-26 | 15 |
organism substance | 4.79e-26 | 15 |
hemolymphoid system | 6.39e-18 | 108 |
hematopoietic system | 1.09e-17 | 98 |
blood island | 1.09e-17 | 98 |
hemopoietic organ | 2.57e-14 | 7 |
immune organ | 2.57e-14 | 7 |
thymus | 5.05e-12 | 4 |
hemolymphoid system gland | 5.05e-12 | 4 |
thymic region | 5.05e-12 | 4 |
pharyngeal gland | 5.05e-12 | 4 |
thymus primordium | 5.05e-12 | 4 |
pharyngeal epithelium | 5.30e-08 | 6 |
chordate pharynx | 5.98e-07 | 10 |
pharyngeal region of foregut | 5.98e-07 | 10 |