FFCP PHASE1:Hg19::chr1:54412072..54412133,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=115353 | |EntrezGene=115353 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28792 | |HGNC=28792 | ||
|TSSclassifier=strong | |||
|UniProt=Q9Y546 | |UniProt=Q9Y546 | ||
|association_with_transcript=35bp_to_NM_052940,uc001cwj.1,uc001cwk.1,uc001cwl.1,uc009vzm.1_5end | |association_with_transcript=35bp_to_NM_052940,uc001cwj.1,uc001cwk.1,uc001cwl.1,uc009vzm.1_5end | ||
|cluster_id=chr1:54412072..54412133,+ | |||
|description=CAGE_peak_2_at_LRRC42_5end | |description=CAGE_peak_2_at_LRRC42_5end | ||
|id=chr1:54412072..54412133,+ | |id=chr1:54412072..54412133,+ | ||
|ontology_enrichment_celltype=CL:0000055!4.63e-28!180;CL:0002321!1.70e-24!248;CL:0000220!1.98e-24!246;CL:0000548!9.45e-17!679;CL:0000004!9.45e-17!679;CL:0000255!9.45e-17!679;CL:0000012!4.19e-16!682;CL:0000066!1.28e-15!254;CL:0000057!2.29e-14!75;CL:0000222!1.12e-13!119;CL:0000144!4.07e-13!625;CL:0002371!4.19e-10!591;CL:0000393!1.47e-09!60;CL:0000211!1.47e-09!60;CL:0000183!4.03e-08!59;CL:0000680!7.59e-08!57;CL:0000056!7.59e-08!57;CL:0000355!7.59e-08!57;CL:0000221!1.16e-07!71;CL:0000187!3.18e-07!54;CL:0000133!9.27e-07!59 | |ontology_enrichment_celltype=CL:0000055!4.63e-28!180;CL:0002321!1.70e-24!248;CL:0000220!1.98e-24!246;CL:0000548!9.45e-17!679;CL:0000004!9.45e-17!679;CL:0000255!9.45e-17!679;CL:0000012!4.19e-16!682;CL:0000066!1.28e-15!254;CL:0000057!2.29e-14!75;CL:0000222!1.12e-13!119;CL:0000144!4.07e-13!625;CL:0002371!4.19e-10!591;CL:0000393!1.47e-09!60;CL:0000211!1.47e-09!60;CL:0000183!4.03e-08!59;CL:0000680!7.59e-08!57;CL:0000056!7.59e-08!57;CL:0000355!7.59e-08!57;CL:0000221!1.16e-07!71;CL:0000187!3.18e-07!54;CL:0000133!9.27e-07!59 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,3.47e-25,250;CL:0000066,1.89e-15,253;CL:0000057,1.87e-14,76;CL:0000222,2.77e-14,121;CL:0000393,9.59e-10,61;CL:0000211,9.59e-10,61;CL:0000680,5.06e-08,58;CL:0000056,5.06e-08,58;CL:0000355,5.06e-08,58;CL:0000221,1.53e-07,72;CL:0000187,2.13e-07,55;CL:0000133,9.06e-07,59 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!1.32e-11!143;UBERON:0002100!2.16e-11!216;UBERON:0000914!1.15e-10!83;UBERON:0002329!1.15e-10!83;UBERON:0003077!1.15e-10!83;UBERON:0003059!1.15e-10!83;UBERON:0007282!1.15e-10!83;UBERON:0009618!1.15e-10!83;UBERON:0007285!1.15e-10!83;UBERON:0000486!2.43e-10!82;UBERON:0004290!1.65e-08!70;UBERON:0000475!5.22e-08!365;UBERON:0003104!5.63e-08!238;UBERON:0009142!5.63e-08!238;UBERON:0000490!5.70e-08!138;UBERON:0003914!1.57e-07!118;UBERON:0001134!2.19e-07!61;UBERON:0002036!2.19e-07!61;UBERON:0003082!2.19e-07!61;UBERON:0002049!2.37e-07!79;UBERON:0007798!2.37e-07!79;UBERON:0000119!3.16e-07!312 | |ontology_enrichment_uberon=UBERON:0005256!1.32e-11!143;UBERON:0002100!2.16e-11!216;UBERON:0000914!1.15e-10!83;UBERON:0002329!1.15e-10!83;UBERON:0003077!1.15e-10!83;UBERON:0003059!1.15e-10!83;UBERON:0007282!1.15e-10!83;UBERON:0009618!1.15e-10!83;UBERON:0007285!1.15e-10!83;UBERON:0000486!2.43e-10!82;UBERON:0004290!1.65e-08!70;UBERON:0000475!5.22e-08!365;UBERON:0003104!5.63e-08!238;UBERON:0009142!5.63e-08!238;UBERON:0000490!5.70e-08!138;UBERON:0003914!1.57e-07!118;UBERON:0001134!2.19e-07!61;UBERON:0002036!2.19e-07!61;UBERON:0003082!2.19e-07!61;UBERON:0002049!2.37e-07!79;UBERON:0007798!2.37e-07!79;UBERON:0000119!3.16e-07!312 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003104,1.47e-11,160;UBERON:0009142,1.47e-11,160;UBERON:0000486,1.59e-10,83;UBERON:0007503,4.05e-10,78;UBERON:0002100,8.96e-10,199;UBERON:0000490,3.69e-09,148;UBERON:0007524,9.94e-09,73;UBERON:0002329,1.10e-08,71;UBERON:0003059,1.10e-08,71;UBERON:0007282,1.10e-08,71;UBERON:0004290,1.10e-08,71;UBERON:0009618,1.10e-08,71;UBERON:0005256,2.14e-08,122;UBERON:0003077,2.42e-08,72;UBERON:0007285,2.42e-08,72;UBERON:0001134,1.47e-07,62;UBERON:0002036,1.47e-07,62;UBERON:0003082,1.47e-07,62;UBERON:0003914,2.21e-07,117;UBERON:0002049,2.77e-07,78;UBERON:0007798,2.77e-07,78;UBERON:0002385,7.11e-07,64;UBERON:0001015,7.11e-07,64;UBERON:0000383,7.11e-07,64;UBERON:0000119,7.37e-07,309 | |||
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| ||
|short_description=p2@LRRC42 | |short_description=p2@LRRC42 | ||
}} | }} |
Latest revision as of 14:20, 18 September 2015
Short description: | p2@LRRC42 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LRRC42_5end |
Coexpression cluster: | NA |
Association with transcript: | 35bp_to_NM_052940, uc001cwj.1, uc001cwk.1, uc001cwl.1, uc009vzm.1_5end |
EntrezGene: | LRRC42 |
HGNC: | 28792 |
UniProt: | Q9Y546 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 3.47e-25 | 250 |
epithelial cell | 1.89e-15 | 253 |
fibroblast | 1.87e-14 | 76 |
mesodermal cell | 2.77e-14 | 121 |
electrically responsive cell | 9.59e-10 | 61 |
electrically active cell | 9.59e-10 | 61 |
muscle precursor cell | 5.06e-08 | 58 |
myoblast | 5.06e-08 | 58 |
multi-potent skeletal muscle stem cell | 5.06e-08 | 58 |
ectodermal cell | 1.53e-07 | 72 |
muscle cell | 2.13e-07 | 55 |
neurectodermal cell | 9.06e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
mesenchyme | 1.47e-11 | 160 |
entire embryonic mesenchyme | 1.47e-11 | 160 |
multilaminar epithelium | 1.59e-10 | 83 |
epithelial vesicle | 4.05e-10 | 78 |
trunk | 8.96e-10 | 199 |
unilaminar epithelium | 3.69e-09 | 148 |
dense mesenchyme tissue | 9.94e-09 | 73 |
somite | 1.10e-08 | 71 |
presomitic mesoderm | 1.10e-08 | 71 |
presumptive segmental plate | 1.10e-08 | 71 |
dermomyotome | 1.10e-08 | 71 |
trunk paraxial mesoderm | 1.10e-08 | 71 |
trunk mesenchyme | 2.14e-08 | 122 |
paraxial mesoderm | 2.42e-08 | 72 |
presumptive paraxial mesoderm | 2.42e-08 | 72 |
skeletal muscle tissue | 1.47e-07 | 62 |
striated muscle tissue | 1.47e-07 | 62 |
myotome | 1.47e-07 | 62 |
epithelial tube | 2.21e-07 | 117 |
vasculature | 2.77e-07 | 78 |
vascular system | 2.77e-07 | 78 |
muscle tissue | 7.11e-07 | 64 |
musculature | 7.11e-07 | 64 |
musculature of body | 7.11e-07 | 64 |
cell layer | 7.37e-07 | 309 |