FFCP PHASE1:Hg19::chr2:182543547..182543559,-: Difference between revisions
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|id=chr2:182543547..182543559,-
|short_description=p9@NEUROD1
|description=CAGE_peak_9_at_NEUROD1_5end
|association_with_transcript=27bp_to_BT019731_5end
|EntrezGe...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4760 | |EntrezGene=4760 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=7762 | |HGNC=7762 | ||
|TSSclassifier=strong | |||
|UniProt=Q13562 | |UniProt=Q13562 | ||
|association_with_transcript=27bp_to_BT019731_5end | |||
|cluster_id=chr2:182543547..182543559,- | |||
|coexpression_cluster_id=C939 | |||
|description=CAGE_peak_9_at_NEUROD1_5end | |||
|id=chr2:182543547..182543559,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002535;1.21e-13;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002535,1.21e-13,2 | |||
|ontology_enrichment_development_v019=UBERON:0006215;3.53e-74;3 | |||
|ontology_enrichment_disease=DOID:5409!6.26e-08!4 | |||
|ontology_enrichment_disease_v019=DOID:3119;4.49e-08;14!DOID:5409;1.40e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:3119,4.82e-08,14;DOID:5409,1.31e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0000073!3.58e-17!94;UBERON:0001016!3.58e-17!94;UBERON:0005743!7.51e-17!86;UBERON:0001017!1.63e-15!82;UBERON:0003075!9.72e-15!86;UBERON:0007284!9.72e-15!86;UBERON:0002346!5.78e-14!90;UBERON:0000955!7.13e-14!69;UBERON:0006238!7.13e-14!69;UBERON:0001049!2.50e-12!57;UBERON:0005068!2.50e-12!57;UBERON:0006241!2.50e-12!57;UBERON:0007135!2.50e-12!57;UBERON:0002616!7.46e-12!59;UBERON:0002037!1.86e-11!6;UBERON:0006215!1.86e-11!6;UBERON:0000033!7.39e-11!123;UBERON:0004121!1.06e-10!169;UBERON:0000924!2.25e-10!173;UBERON:0006601!2.25e-10!173;UBERON:0000153!3.21e-10!129;UBERON:0007811!3.21e-10!129;UBERON:0002619!3.90e-10!22;UBERON:0004733!1.26e-09!12;UBERON:0002028!1.26e-09!12;UBERON:0007277!1.26e-09!12;UBERON:0001869!3.23e-09!32;UBERON:0003056!3.39e-09!61;UBERON:0002791!6.36e-09!33;UBERON:0000956!6.58e-09!25;UBERON:0000203!6.58e-09!25;UBERON:0004732!6.80e-09!13;UBERON:0002020!1.21e-08!34;UBERON:0003528!1.21e-08!34;UBERON:0001893!1.21e-08!34;UBERON:0003112!3.83e-08!1;UBERON:0000032!3.83e-08!1;UBERON:0005253!3.83e-08!1;UBERON:0003128!3.83e-08!1;UBERON:0002241!3.83e-08!1;UBERON:0001703!3.83e-08!1;UBERON:0004761!3.83e-08!1;UBERON:0009617!3.83e-08!1;UBERON:0001950!6.06e-08!20;UBERON:0001882!7.16e-08!1;UBERON:0005403!7.16e-08!1;UBERON:0002680!8.68e-08!9;UBERON:0001895!8.68e-08!9;UBERON:0010092!8.68e-08!9;UBERON:0003076!1.01e-07!15;UBERON:0003057!1.01e-07!15;UBERON:0002780!4.52e-07!41;UBERON:0001890!4.52e-07!41;UBERON:0006240!4.52e-07!41;UBERON:0003080!6.90e-07!42 | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;1.34e-37;6!UBERON:0002680;2.27e-25;9!UBERON:0001895;2.27e-25;9!UBERON:0004733;3.09e-19;12!UBERON:0002028;3.09e-19;12!UBERON:0004732;8.09e-18;13!UBERON:0006955;1.21e-13;2!UBERON:0004801;1.21e-13;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,1.52e-37,6;UBERON:0006215,1.52e-37,6;UBERON:0002680,2.47e-25,9;UBERON:0001895,2.47e-25,9;UBERON:0010092,2.47e-25,9;UBERON:0004733,3.29e-19,12;UBERON:0002028,3.29e-19,12;UBERON:0007277,3.29e-19,12;UBERON:0004732,8.57e-18,13;UBERON:0003076,1.59e-15,15;UBERON:0003057,1.59e-15,15;UBERON:0006955,1.21e-13,2;UBERON:0004801,1.21e-13,2 | |||
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|short_description=p9@NEUROD1 | |||
}} | }} |
Latest revision as of 21:22, 18 September 2015
Short description: | p9@NEUROD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_NEUROD1_5end |
Coexpression cluster: | C939_neuroblastoma_argyrophil_small_cerebellum_retinoblastoma_pineal_medulloblastoma |
Association with transcript: | 27bp_to_BT019731_5end |
EntrezGene: | NEUROD1 |
HGNC: | 7762 |
UniProt: | Q13562 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of cervix | 1.21e-13 | 2 |
Ontology term | p-value | n |
---|---|---|
cerebellum | 1.52e-37 | 6 |
rhombic lip | 1.52e-37 | 6 |
regional part of metencephalon | 2.47e-25 | 9 |
metencephalon | 2.47e-25 | 9 |
future metencephalon | 2.47e-25 | 9 |
segmental subdivision of hindbrain | 3.29e-19 | 12 |
hindbrain | 3.29e-19 | 12 |
presumptive hindbrain | 3.29e-19 | 12 |
segmental subdivision of nervous system | 8.57e-18 | 13 |
posterior neural tube | 1.59e-15 | 15 |
chordal neural plate | 1.59e-15 | 15 |
uterine epithelium | 1.21e-13 | 2 |
cervix epithelium | 1.21e-13 | 2 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system cancer | 4.82e-08 | 14 |
lung small cell carcinoma | 1.31e-07 | 4 |