FFCP PHASE1:Hg19::chr14:22265490..22265505,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=12146 | |HGNC=12146 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=31bp_to_ENST00000390430,uc010air.1_5end | |association_with_transcript=31bp_to_ENST00000390430,uc010air.1_5end | ||
|cluster_id=chr14:22265490..22265505,+ | |||
|coexpression_cluster_id=C496 | |coexpression_cluster_id=C496 | ||
|description=CAGE_peak_4_at_TRAV8-1_5end | |description=CAGE_peak_4_at_TRAV8-1_5end | ||
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|ontology_enrichment_celltype=CL:0000791!1.05e-52!18;CL:0000789!1.05e-52!18;CL:0002420!1.05e-52!18;CL:0002419!1.05e-52!18;CL:0000790!1.05e-52!18;CL:0000084!1.05e-36!25;CL:0000827!1.05e-36!25;CL:0000625!1.21e-36!11;CL:0000624!6.09e-21!6;CL:0000838!1.09e-19!52;CL:0000542!3.17e-19!53;CL:0000051!3.17e-19!53;CL:0000898!9.73e-12!3;CL:0000842!1.19e-10!3;CL:0002087!1.27e-10!119;CL:0000738!4.30e-09!140;CL:0000815!2.30e-08!2;CL:0000792!2.30e-08!2;CL:0002677!2.30e-08!2;CL:0000224!4.27e-08!4;CL:0002031!3.63e-07!124 | |ontology_enrichment_celltype=CL:0000791!1.05e-52!18;CL:0000789!1.05e-52!18;CL:0002420!1.05e-52!18;CL:0002419!1.05e-52!18;CL:0000790!1.05e-52!18;CL:0000084!1.05e-36!25;CL:0000827!1.05e-36!25;CL:0000625!1.21e-36!11;CL:0000624!6.09e-21!6;CL:0000838!1.09e-19!52;CL:0000542!3.17e-19!53;CL:0000051!3.17e-19!53;CL:0000898!9.73e-12!3;CL:0000842!1.19e-10!3;CL:0002087!1.27e-10!119;CL:0000738!4.30e-09!140;CL:0000815!2.30e-08!2;CL:0000792!2.30e-08!2;CL:0002677!2.30e-08!2;CL:0000224!4.27e-08!4;CL:0002031!3.63e-07!124 | ||
|ontology_enrichment_celltype_v019=CL:0000791;4.73e-26;18!CL:0000789;4.73e-26;18!CL:0002419;4.73e-26;18!CL:0000898;2.24e-23;3!CL:0000624;9.32e-21;6!CL:0000084;1.78e-18;25!CL:0000815;3.48e-16;2!CL:0000792;3.48e-16;2!CL:0002677;3.48e-16;2!CL:0000625;2.84e-11;11!CL:0000895;5.97e-09;1 | |ontology_enrichment_celltype_v019=CL:0000791;4.73e-26;18!CL:0000789;4.73e-26;18!CL:0002419;4.73e-26;18!CL:0000898;2.24e-23;3!CL:0000624;9.32e-21;6!CL:0000084;1.78e-18;25!CL:0000815;3.48e-16;2!CL:0000792;3.48e-16;2!CL:0002677;3.48e-16;2!CL:0000625;2.84e-11;11!CL:0000895;5.97e-09;1 | ||
|ontology_enrichment_celltype_v019_2=CL:0000791,3.69e-26,18;CL:0000789,3.69e-26,18;CL:0002420,3.69e-26,18;CL:0002419,3.69e-26,18;CL:0000790,3.69e-26,18;CL:0000898,1.72e-23,3;CL:0000624,9.12e-21,6;CL:0000084,1.50e-18,25;CL:0000827,1.50e-18,25;CL:0000815,3.23e-16,2;CL:0000792,3.23e-16,2;CL:0002677,3.23e-16,2;CL:0000625,2.35e-11,11;CL:0000838,1.46e-10,52;CL:0000542,2.45e-10,53;CL:0000051,2.45e-10,53;CL:0000810,4.91e-09,1;CL:0000895,4.91e-09,1;CL:0002436,4.91e-09,1;CL:0002427,4.91e-09,1;CL:0002428,4.91e-09,1;CL:0002429,4.91e-09,1;CL:0002433,4.91e-09,1;CL:0002431,4.91e-09,1;CL:0002432,4.91e-09,1 | |||
|ontology_enrichment_development_v019=CL:0000790;4.73e-26;18!CL:0002427;5.97e-09;1 | |ontology_enrichment_development_v019=CL:0000790;4.73e-26;18!CL:0002427;5.97e-09;1 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!3.44e-21!15;UBERON:0000179!3.44e-21!15;UBERON:0000463!3.44e-21!15;UBERON:0002370!3.00e-09!4;UBERON:0005058!3.00e-09!4;UBERON:0009113!3.00e-09!4;UBERON:0003295!3.00e-09!4;UBERON:0005562!3.00e-09!4;UBERON:0004177!1.53e-08!7 | |ontology_enrichment_uberon=UBERON:0000178!3.44e-21!15;UBERON:0000179!3.44e-21!15;UBERON:0000463!3.44e-21!15;UBERON:0002370!3.00e-09!4;UBERON:0005058!3.00e-09!4;UBERON:0009113!3.00e-09!4;UBERON:0003295!3.00e-09!4;UBERON:0005562!3.00e-09!4;UBERON:0004177!1.53e-08!7 | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;3.56e-17;2!UBERON:0005058;3.56e-17;2!UBERON:0009113;3.56e-17;2!UBERON:0000178;1.55e-12;15!UBERON:0000179;1.55e-12;15!UBERON:0000463;1.55e-12;15!UBERON:0002390;9.48e-10;32!UBERON:0004177;2.17e-07;5!UBERON:0005057;2.17e-07;5!UBERON:0002193;9.03e-07;42 | |ontology_enrichment_uberon_v019=UBERON:0002370;3.56e-17;2!UBERON:0005058;3.56e-17;2!UBERON:0009113;3.56e-17;2!UBERON:0000178;1.55e-12;15!UBERON:0000179;1.55e-12;15!UBERON:0000463;1.55e-12;15!UBERON:0002390;9.48e-10;32!UBERON:0004177;2.17e-07;5!UBERON:0005057;2.17e-07;5!UBERON:0002193;9.03e-07;42 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.54e-18,4;UBERON:0005058,1.54e-18,4;UBERON:0009113,1.54e-18,4;UBERON:0003295,1.54e-18,4;UBERON:0005562,1.54e-18,4;UBERON:0003351,1.51e-12,6;UBERON:0000178,2.50e-12,15;UBERON:0000179,2.50e-12,15;UBERON:0000463,2.50e-12,15;UBERON:0004177,7.93e-11,7;UBERON:0005057,7.93e-11,7;UBERON:0000974,1.02e-07,10;UBERON:0003408,1.02e-07,10;UBERON:0001042,1.02e-07,10;UBERON:0009145,1.02e-07,10;UBERON:0006562,4.69e-07,11;UBERON:0009722,4.69e-07,11;UBERON:0007690,4.69e-07,11 | |||
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| ||
|short_description=p4@TRAV8-1 | |short_description=p4@TRAV8-1 | ||
}} | }} |
Latest revision as of 03:36, 19 September 2015
Short description: | p4@TRAV8-1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_TRAV8-1_5end |
Coexpression cluster: | C496_thymus_CD4_CD8_hairy_vein_chronic_Peripheral |
Association with transcript: | 31bp_to_ENST00000390430, uc010air.1_5end |
EntrezGene: | NA |
HGNC: | 12146 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 3.69e-26 | 18 |
alpha-beta T cell | 3.69e-26 | 18 |
immature T cell | 3.69e-26 | 18 |
mature T cell | 3.69e-26 | 18 |
immature alpha-beta T cell | 3.69e-26 | 18 |
naive T cell | 1.72e-23 | 3 |
CD4-positive, alpha-beta T cell | 9.12e-21 | 6 |
T cell | 1.50e-18 | 25 |
pro-T cell | 1.50e-18 | 25 |
regulatory T cell | 3.23e-16 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 3.23e-16 | 2 |
naive regulatory T cell | 3.23e-16 | 2 |
CD8-positive, alpha-beta T cell | 2.35e-11 | 11 |
lymphoid lineage restricted progenitor cell | 1.46e-10 | 52 |
lymphocyte | 2.45e-10 | 53 |
common lymphoid progenitor | 2.45e-10 | 53 |
CD4-positive, alpha-beta thymocyte | 4.91e-09 | 1 |
naive thymus-derived CD4-positive, alpha-beta T cell | 4.91e-09 | 1 |
mature CD4 single-positive thymocyte | 4.91e-09 | 1 |
resting double-positive thymocyte | 4.91e-09 | 1 |
double-positive blast | 4.91e-09 | 1 |
CD69-positive double-positive thymocyte | 4.91e-09 | 1 |
CD69-positive, CD4-positive single-positive thymocyte | 4.91e-09 | 1 |
CD4-positive, CD8-intermediate double-positive thymocyte | 4.91e-09 | 1 |
CD24-positive, CD4 single-positive thymocyte | 4.91e-09 | 1 |
Ontology term | p-value | n |
---|---|---|
thymus | 1.54e-18 | 4 |
hemolymphoid system gland | 1.54e-18 | 4 |
thymic region | 1.54e-18 | 4 |
pharyngeal gland | 1.54e-18 | 4 |
thymus primordium | 1.54e-18 | 4 |
pharyngeal epithelium | 1.51e-12 | 6 |
blood | 2.50e-12 | 15 |
haemolymphatic fluid | 2.50e-12 | 15 |
organism substance | 2.50e-12 | 15 |
hemopoietic organ | 7.93e-11 | 7 |
immune organ | 7.93e-11 | 7 |
neck | 1.02e-07 | 10 |
gland of gut | 1.02e-07 | 10 |
chordate pharynx | 1.02e-07 | 10 |
pharyngeal region of foregut | 1.02e-07 | 10 |
pharynx | 4.69e-07 | 11 |
entire pharyngeal arch endoderm | 4.69e-07 | 11 |
early pharyngeal endoderm | 4.69e-07 | 11 |