FFCP PHASE1:Hg19::chr1:183559846..183559873,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4688 | |EntrezGene=4688 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7661 | |HGNC=7661 | ||
|TSSclassifier=strong | |||
|UniProt=E9PHX3,E9PHJ2,P19878,B4DKQ7,B4DQA7 | |UniProt=E9PHX3,E9PHJ2,P19878,B4DKQ7,B4DQA7 | ||
|association_with_transcript=-107bp_to_ENST00000392014,ENST00000413720,ENST00000418089,NM_000433,NM_001190789,NM_001190794,uc001gqj.3,uc010pod.1,uc010poe.1_5end | |association_with_transcript=-107bp_to_ENST00000392014,ENST00000413720,ENST00000418089,NM_000433,NM_001190789,NM_001190794,uc001gqj.3,uc010pod.1,uc010poe.1_5end | ||
|cluster_id=chr1:183559846..183559873,- | |||
|description=CAGE_peak_11_at_NCF2_5end | |description=CAGE_peak_11_at_NCF2_5end | ||
|id=chr1:183559846..183559873,- | |id=chr1:183559846..183559873,- | ||
|ontology_enrichment_celltype=CL:0000738!3.61e-30!140;CL:0000766!2.21e-27!76;CL:0002009!1.11e-26!65;CL:0002194!3.49e-24!63;CL:0000576!3.49e-24!63;CL:0000040!3.49e-24!63;CL:0000559!3.49e-24!63;CL:0002032!9.33e-24!165;CL:0000837!9.33e-24!165;CL:0000557!1.87e-23!71;CL:0002057!2.15e-23!42;CL:0000037!4.60e-23!172;CL:0000566!4.60e-23!172;CL:0002087!5.10e-23!119;CL:0000763!4.32e-22!112;CL:0000049!4.32e-22!112;CL:0002031!8.06e-22!124;CL:0000988!1.22e-21!182;CL:0000860!2.98e-21!45;CL:0000839!1.08e-20!70;CL:0000990!7.61e-12!8;CL:0000451!2.30e-09!10;CL:0000453!2.20e-08!5;CL:0000840!2.35e-08!5;CL:0001029!2.35e-08!5;CL:0000094!7.98e-08!8 | |ontology_enrichment_celltype=CL:0000738!3.61e-30!140;CL:0000766!2.21e-27!76;CL:0002009!1.11e-26!65;CL:0002194!3.49e-24!63;CL:0000576!3.49e-24!63;CL:0000040!3.49e-24!63;CL:0000559!3.49e-24!63;CL:0002032!9.33e-24!165;CL:0000837!9.33e-24!165;CL:0000557!1.87e-23!71;CL:0002057!2.15e-23!42;CL:0000037!4.60e-23!172;CL:0000566!4.60e-23!172;CL:0002087!5.10e-23!119;CL:0000763!4.32e-22!112;CL:0000049!4.32e-22!112;CL:0002031!8.06e-22!124;CL:0000988!1.22e-21!182;CL:0000860!2.98e-21!45;CL:0000839!1.08e-20!70;CL:0000990!7.61e-12!8;CL:0000451!2.30e-09!10;CL:0000453!2.20e-08!5;CL:0000840!2.35e-08!5;CL:0001029!2.35e-08!5;CL:0000094!7.98e-08!8 | ||
|ontology_enrichment_celltype_v019=CL:0000840;3.34e-23;5!CL:0000990;2.10e-15;8!CL:0000771;1.40e-12;2!CL:0000451;1.46e-12;10!CL:0001014;6.33e-12;2!CL:0001016;6.33e-12;2!CL:0000094;1.62e-11;8!CL:0000081;2.14e-08;11!CL:0000775;2.45e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000840,3.51e-23,5;CL:0001029,3.51e-23,5;CL:0000990,2.17e-15,8;CL:0000738,1.80e-14,136;CL:0000766,1.58e-13,72;CL:0000771,1.22e-12,2;CL:0000451,1.50e-12,10;CL:0002009,5.83e-12,61;CL:0001014,7.28e-12,2;CL:0001016,7.28e-12,2;CL:0000094,1.51e-11,8;CL:0002032,1.65e-11,161;CL:0000837,1.65e-11,161;CL:0000037,7.76e-11,168;CL:0000763,1.06e-10,108;CL:0000049,1.06e-10,108;CL:0000557,1.12e-10,67;CL:0002031,1.42e-10,120;CL:0000988,4.72e-10,177;CL:0002194,9.98e-09,59;CL:0000576,9.98e-09,59;CL:0000040,9.98e-09,59;CL:0000559,9.98e-09,59;CL:0002087,1.57e-08,115;CL:0000081,2.04e-08,11;CL:0000775,2.46e-08,3;CL:0000839,1.31e-07,66 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:2355,8.75e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0002390!3.18e-29!102;UBERON:0003061!3.18e-29!102;UBERON:0002193!2.31e-26!112;UBERON:0002371!1.51e-19!80;UBERON:0001474!2.07e-17!86;UBERON:0004765!3.03e-15!101;UBERON:0001434!3.03e-15!101;UBERON:0002405!2.49e-14!115;UBERON:0000178!1.22e-10!15;UBERON:0000179!1.22e-10!15;UBERON:0000463!1.22e-10!15;UBERON:0003081!4.97e-08!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.64e-22;15!UBERON:0000179;2.64e-22;15!UBERON:0000463;2.64e-22;15!UBERON:0002390;8.32e-12;32!UBERON:0002193;7.79e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.23e-22,15;UBERON:0000179,2.23e-22,15;UBERON:0000463,2.23e-22,15;UBERON:0002390,9.16e-22,98;UBERON:0003061,9.16e-22,98;UBERON:0002193,2.50e-19,108;UBERON:0002371,3.93e-09,76;UBERON:0002405,2.39e-08,93;UBERON:0001474,2.73e-08,82;UBERON:0003081,3.85e-08,203;UBERON:0004765,2.42e-07,90 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.2857764471619,3.7766271146975,3.38456359648821,0,0.383829398097213,0.154816123316076,0,0.30120591877825,1.10926203050036,0,0,0,0,0,0.217010870715852,0,0.32389366601898,0,1.45398238779565,1.88937971844405,0.727752183563449,0.697287110717054,0.411167888021826,0.619412741790207,0.28769239232215,0.256160706529101,0.709446689665756,1.03423704220986,0,0,0.941211697713023,1.09162460023138,0.224723484445085,0,0,0.639337125799041,0.329851300186716,0.997318288108159,0.426224750532694,0.290209238628584,1.70215567407342,0.622822248995575,0.251248665256743,1.0429658368404,0,0,0.736555271975129,0.316462387440884,0,0.212604299965044,0.209658645508376,0,0,0,0,0.19891667719909,0,0,0,0,0.426730222566507,0,0,0,0,0,0,0.382273228125229,0,0,0,0,0,0,0.167186495390678,0,0,0,0.111410456885174,0,0.221533894583621,0,0.640456598628376,0.130059347559878,0,0,0,0,0,0,0.226618685395132,0,0,0,0,0,0,0,0,0,0.236777252044017,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261958150995425,0.364295288292542,0,4.21911611751088,2.96020553408754,4.78648657867915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.22462922052443,3.87780264148325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.966304265816484,1.09098448236334,0.573609190778008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217879444092406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.768251997860379,6.74410519545717,0.904760751704678,0,0,0,0,0,0,0,0,0,0,0,0,1.63802985597466,0.297262324577456,0,0.671928512795438,0.567100388969546,0,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,0.502257091432126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.99602809578873,0,2.07207756718018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431428401637234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574265537996172,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0.577332676353072,0,0,0.0941438007767792,0,0,0.443430153536676,0.229723400206959,4.05958087385735,6.88173486428138,1.70894156152249,1.42939065274673,1.23408681925858,4.53931317834902,1.62009431171434,3.17250070517708,0,0,0.735120647943095,0.185803175125719,0,0,0,0,0,0,0,0,0,0.156679895773023,0,0,0,0,0.425846237690326,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,1.72318727645497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.557694977114413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123563938946503,0,0,0,0,0.182454789215666,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.685946781900644,0,0,0,0,0,0,0.290967049465258,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0.262887354279314,0,0,0,0,0,0,0,0,0,0,0,0.0674035438541849,0,1.86281330544726,0,0,0,0,0,1.349843349309,3.0952078182318,0,1.34173875039706,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121792598380896,2.55336503108073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.779441235357554,0.132864840313363,0.163565394255844,0,0,0.211312123358627,0.19998739585493,0,0,0,0,1.11903606175556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196295437002051,0.235939446695481,0.917142992608395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.709618961301111,0.115233987555779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,7.09582207066995,0.357107877211315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0.250707539292375,0,0,0,0,0,0,0.0645889098360061,0,0,0,0,0.435433495793923,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0.641136984606466 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.2857764471619,3.7766271146975,3.38456359648821,0,0.383829398097213,0.154816123316076,0,0.30120591877825,1.10926203050036,0,0,0,0,0,0.217010870715852,0,0.32389366601898,0,1.45398238779565,1.88937971844405,0.727752183563449,0.697287110717054,0.411167888021826,0.619412741790207,0.28769239232215,0.256160706529101,0.709446689665756,1.03423704220986,0,0,0.941211697713023,1.09162460023138,0.224723484445085,0,0,0.639337125799041,0.329851300186716,0.997318288108159,0.426224750532694,0.290209238628584,1.70215567407342,0.622822248995575,0.251248665256743,1.0429658368404,0,0,0.736555271975129,0.316462387440884,0,0.212604299965044,0.209658645508376,0,0,0,0,0.19891667719909,0,0,0,0,0.426730222566507,0,0,0,0,0,0,0.382273228125229,0,0,0,0,0,0,0.167186495390678,0,0,0,0.111410456885174,0,0.221533894583621,0,0.640456598628376,0.130059347559878,0,0,0,0,0,0,0.226618685395132,0,0,0,0,0,0,0,0,0,0.236777252044017,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261958150995425,0.364295288292542,0,4.21911611751088,2.96020553408754,4.78648657867915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.22462922052443,3.87780264148325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.966304265816484,1.09098448236334,0.573609190778008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217879444092406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.768251997860379,6.74410519545717,0.904760751704678,0,0,0,0,0,0,0,0,0,0,0,0,1.63802985597466,0.297262324577456,0,0.671928512795438,0.567100388969546,0,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,0.502257091432126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.99602809578873,0,2.07207756718018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431428401637234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574265537996172,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0.577332676353072,0,0,0.0941438007767792,0,0,0.443430153536676,0.229723400206959,4.05958087385735,6.88173486428138,1.70894156152249,1.42939065274673,1.23408681925858,4.53931317834902,1.62009431171434,3.17250070517708,0,0,0.735120647943095,0.185803175125719,0,0,0,0,0,0,0,0,0,0.156679895773023,0,0,0,0,0.425846237690326,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,1.72318727645497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.557694977114413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123563938946503,0,0,0,0,0.182454789215666,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.685946781900644,0,0,0,0,0,0,0.290967049465258,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0.262887354279314,0,0,0,0,0,0,0,0,0,0,0,0.0674035438541849,0,1.86281330544726,0,0,0,0,0,1.349843349309,3.0952078182318,0,1.34173875039706,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121792598380896,2.55336503108073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.779441235357554,0.132864840313363,0.163565394255844,0,0,0.211312123358627,0.19998739585493,0,0,0,0,1.11903606175556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196295437002051,0.235939446695481,0.917142992608395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.709618961301111,0.115233987555779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,7.09582207066995,0.357107877211315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0.250707539292375,0,0,0,0,0,0,0.0645889098360061,0,0,0,0,0.435433495793923,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0.641136984606466 | ||
|short_description=p11@NCF2 | |short_description=p11@NCF2 | ||
}} | }} |
Latest revision as of 03:43, 19 September 2015
Short description: | p11@NCF2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_NCF2_5end |
Coexpression cluster: | NA |
Association with transcript: | -107bp_to_ENST00000392014, ENST00000413720, ENST00000418089, NM_000433, NM_001190789, NM_001190794, uc001gqj.3, uc010pod.1, uc010poe.1_5end |
EntrezGene: | NCF2 |
HGNC: | 7661 |
UniProt: | E9PHX3E9PHJ2P19878B4DKQ7B4DQA7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
immature conventional dendritic cell | 3.51e-23 | 5 |
common dendritic progenitor | 3.51e-23 | 5 |
conventional dendritic cell | 2.17e-15 | 8 |
leukocyte | 1.80e-14 | 136 |
myeloid leukocyte | 1.58e-13 | 72 |
eosinophil | 1.22e-12 | 2 |
dendritic cell | 1.50e-12 | 10 |
macrophage dendritic cell progenitor | 5.83e-12 | 61 |
CD1a-positive Langerhans cell | 7.28e-12 | 2 |
immature CD1a-positive Langerhans cell | 7.28e-12 | 2 |
granulocyte | 1.51e-11 | 8 |
hematopoietic oligopotent progenitor cell | 1.65e-11 | 161 |
hematopoietic multipotent progenitor cell | 1.65e-11 | 161 |
hematopoietic stem cell | 7.76e-11 | 168 |
myeloid cell | 1.06e-10 | 108 |
common myeloid progenitor | 1.06e-10 | 108 |
granulocyte monocyte progenitor cell | 1.12e-10 | 67 |
hematopoietic lineage restricted progenitor cell | 1.42e-10 | 120 |
hematopoietic cell | 4.72e-10 | 177 |
monopoietic cell | 9.98e-09 | 59 |
monocyte | 9.98e-09 | 59 |
monoblast | 9.98e-09 | 59 |
promonocyte | 9.98e-09 | 59 |
nongranular leukocyte | 1.57e-08 | 115 |
blood cell | 2.04e-08 | 11 |
neutrophil | 2.46e-08 | 3 |
myeloid lineage restricted progenitor cell | 1.31e-07 | 66 |
Ontology term | p-value | n |
---|---|---|
blood | 2.23e-22 | 15 |
haemolymphatic fluid | 2.23e-22 | 15 |
organism substance | 2.23e-22 | 15 |
hematopoietic system | 9.16e-22 | 98 |
blood island | 9.16e-22 | 98 |
hemolymphoid system | 2.50e-19 | 108 |
bone marrow | 3.93e-09 | 76 |
immune system | 2.39e-08 | 93 |
bone element | 2.73e-08 | 82 |
lateral plate mesoderm | 3.85e-08 | 203 |
skeletal element | 2.42e-07 | 90 |
Ontology term | p-value | n |
---|---|---|
anemia | 8.75e-07 | 1 |