FFCP PHASE1:Hg19::chr3:62228807..62228819,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5793 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9671 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-430bp_to_ENST00000485215_5end | |||
|cluster_id=chr3:62228807..62228819,+ | |||
|coexpression_cluster_id=C361 | |||
|description=CAGE_peak_10_at_PTPRG_5end | |||
|id=chr3:62228807..62228819,+ | |||
|ontology_enrichment_celltype=CL:0002605!2.47e-14!3;CL:0002319!4.57e-10!25;CL:0000133!3.26e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000047;1.74e-57;2!CL:0000306;2.43e-08;4!CL:0002222;2.43e-08;4!CL:0002224;2.43e-08;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,2.85e-15,8;CL:0000306,2.43e-08,4;CL:0002222,2.43e-08,4;CL:0002224,2.43e-08,4 | |||
|ontology_enrichment_development_v019=UBERON:0006215;1.12e-38;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.27e-52!57;UBERON:0005068!1.27e-52!57;UBERON:0006241!1.27e-52!57;UBERON:0007135!1.27e-52!57;UBERON:0005743!2.62e-51!86;UBERON:0001869!3.41e-51!32;UBERON:0001017!1.48e-50!82;UBERON:0000073!6.42e-49!94;UBERON:0001016!6.42e-49!94;UBERON:0002780!4.05e-48!41;UBERON:0001890!4.05e-48!41;UBERON:0006240!4.05e-48!41;UBERON:0001893!5.29e-48!34;UBERON:0003080!7.00e-47!42;UBERON:0002616!1.37e-46!59;UBERON:0002791!2.13e-44!33;UBERON:0002020!5.28e-43!34;UBERON:0003528!5.28e-43!34;UBERON:0003075!6.22e-42!86;UBERON:0007284!6.22e-42!86;UBERON:0000955!1.04e-41!69;UBERON:0006238!1.04e-41!69;UBERON:0002346!8.52e-40!90;UBERON:0003056!1.44e-37!61;UBERON:0000956!1.26e-36!25;UBERON:0000203!1.26e-36!25;UBERON:0004121!3.58e-28!169;UBERON:0000924!2.32e-27!173;UBERON:0006601!2.32e-27!173;UBERON:0000033!4.78e-27!123;UBERON:0002619!1.40e-26!22;UBERON:0000153!1.68e-25!129;UBERON:0007811!1.68e-25!129;UBERON:0001950!1.13e-24!20;UBERON:0007023!1.45e-21!115;UBERON:0001872!3.49e-15!5;UBERON:0000200!7.52e-13!6;UBERON:0000025!2.30e-11!194;UBERON:0000369!7.80e-11!4;UBERON:0002435!7.80e-11!4;UBERON:0000204!7.80e-11!4;UBERON:0010082!7.80e-11!4;UBERON:0001870!9.21e-11!2;UBERON:0009663!1.37e-10!7;UBERON:0000483!1.51e-08!309;UBERON:0000064!1.75e-08!219;UBERON:0000119!2.12e-08!312;UBERON:0002308!2.94e-08!9;UBERON:0002420!2.94e-08!9;UBERON:0000125!2.94e-08!9;UBERON:0007245!2.94e-08!9;UBERON:0010009!2.94e-08!9;UBERON:0010011!2.94e-08!9;UBERON:0000454!2.94e-08!9;UBERON:0002037!3.61e-08!6;UBERON:0006215!3.61e-08!6;UBERON:0004111!5.11e-08!241;UBERON:0003076!5.40e-08!15;UBERON:0003057!5.40e-08!15;UBERON:0005383!6.67e-07!3;UBERON:0005382!6.67e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;6.18e-20;6!UBERON:0002702;2.37e-15;2!UBERON:0002680;1.19e-13;9!UBERON:0001895;1.19e-13;9!UBERON:0001870;1.09e-10;3!UBERON:0004733;1.72e-10;12!UBERON:0002028;1.72e-10;12!UBERON:0004732;9.30e-10;13!UBERON:0010077;2.43e-08;4!UBERON:0005389;2.43e-08;4!UBERON:0000484;2.43e-08;4!UBERON:0000965;2.43e-08;4!UBERON:0001803;2.43e-08;4!UBERON:0001016;5.42e-07;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,6.48e-20,6;UBERON:0006215,6.48e-20,6;UBERON:0002702,2.05e-15,2;UBERON:0002680,1.23e-13,9;UBERON:0001895,1.23e-13,9;UBERON:0010092,1.23e-13,9;UBERON:0001870,9.90e-11,3;UBERON:0004733,1.77e-10,12;UBERON:0002028,1.77e-10,12;UBERON:0007277,1.77e-10,12;UBERON:0004732,9.51e-10,13;UBERON:0001017,6.78e-09,81;UBERON:0003076,1.42e-08,15;UBERON:0003057,1.42e-08,15;UBERON:0010077,2.43e-08,4;UBERON:0005389,2.43e-08,4;UBERON:0000484,2.43e-08,4;UBERON:0002546,2.43e-08,4;UBERON:0000965,2.43e-08,4;UBERON:0001803,2.43e-08,4;UBERON:0003073,2.43e-08,4;UBERON:0005426,2.43e-08,4;UBERON:0001016,4.75e-08,89 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0.136874425072884,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0.207322110030741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.39116485970092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,24.138989301134,2.60279707715243,0.773288812777695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185536196323703,0,0,0,0,0,0,0,1.37897349296586,0,0,0,0.120596438625408,3.05163472634166,2.10100593869327,0.886642856860642,0.438770794307945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.468528891450678,0,0,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.90392296312213,0,0,0.253243183823515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0.182248669974074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.77213635993397,0,0,0,0,0.124192805882767,0,0,0,0,0,0,0.579684114443301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256916900385838,0,0,0.205116364240755,0,0.0691572524642179,0.322951291263702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.405225507710368,0.781078098613847,0.206686796501184,0.317079050969534,0,0,0,0,0,0,0,0,0.227662191351298,0,0,0,0,0.0657727735628491,0,0,0,0.157115589916002,0,0,0,0,0.285906176706625,0,0,0,0,0,0,0,0,0.118332000730565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.8453114551668,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727345877715,0,0,0,0,0,0,0,0 | |||
|short_description=p10@PTPRG | |||
}} |
Latest revision as of 07:55, 19 September 2015
Short description: | p10@PTPRG |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_PTPRG_5end |
Coexpression cluster: | C361_Neural_Astrocyte_Neurons_spinal_Chondrocyte_Fibroblast_sacrococcigeal |
Association with transcript: | -430bp_to_ENST00000485215_5end |
EntrezGene: | PTPRG |
HGNC: | 9671 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 2.85e-15 | 8 |
crystallin accumulating cell | 2.43e-08 | 4 |
vertebrate lens cell | 2.43e-08 | 4 |
lens epithelial cell | 2.43e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
cerebellum | 6.48e-20 | 6 |
rhombic lip | 6.48e-20 | 6 |
middle frontal gyrus | 2.05e-15 | 2 |
regional part of metencephalon | 1.23e-13 | 9 |
metencephalon | 1.23e-13 | 9 |
future metencephalon | 1.23e-13 | 9 |
frontal cortex | 9.90e-11 | 3 |
segmental subdivision of hindbrain | 1.77e-10 | 12 |
hindbrain | 1.77e-10 | 12 |
presumptive hindbrain | 1.77e-10 | 12 |
segmental subdivision of nervous system | 9.51e-10 | 13 |
central nervous system | 6.78e-09 | 81 |
posterior neural tube | 1.42e-08 | 15 |
chordal neural plate | 1.42e-08 | 15 |
cuboidal epithelium | 2.43e-08 | 4 |
transparent eye structure | 2.43e-08 | 4 |
simple cuboidal epithelium | 2.43e-08 | 4 |
cranial placode | 2.43e-08 | 4 |
lens of camera-type eye | 2.43e-08 | 4 |
epithelium of lens | 2.43e-08 | 4 |
lens placode | 2.43e-08 | 4 |
lens vesicle | 2.43e-08 | 4 |
nervous system | 4.75e-08 | 89 |