FFCP PHASE1:Hg19::chr1:84610121..84610134,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr1:84610121..84610134,+
|short_description=p19@PRKACB
|description=CAGE_peak_19_at_PRKACB_5end
|association_with_transcript=116bp_to_ENST00000470673_5end
|En...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5567 | |EntrezGene=5567 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9381 | |HGNC=9381 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=116bp_to_ENST00000470673_5end | |||
|cluster_id=chr1:84610121..84610134,+ | |||
|description=CAGE_peak_19_at_PRKACB_5end | |||
|id=chr1:84610121..84610134,+ | |||
|ontology_enrichment_celltype=CL:0000542!6.87e-34!53;CL:0000051!6.87e-34!53;CL:0000838!6.61e-33!52;CL:0000037!3.91e-26!172;CL:0000566!3.91e-26!172;CL:0000988!4.23e-24!182;CL:0002032!1.26e-22!165;CL:0000837!1.26e-22!165;CL:0000738!9.87e-22!140;CL:0000084!1.03e-20!25;CL:0000827!1.03e-20!25;CL:0002087!2.35e-20!119;CL:0000791!1.76e-19!18;CL:0000789!1.76e-19!18;CL:0002420!1.76e-19!18;CL:0002419!1.76e-19!18;CL:0000790!1.76e-19!18;CL:0002031!3.04e-19!124;CL:0000236!4.48e-13!14;CL:0000945!1.34e-12!24;CL:0000826!1.34e-12!24;CL:0000625!3.42e-12!11;CL:0000624!9.38e-08!6 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.89e-32;18!CL:0000789;1.89e-32;18!CL:0002419;1.89e-32;18!CL:0000625;8.88e-29;11!CL:0000084;4.50e-26;25!CL:0000542;1.51e-22;53!CL:0000945;5.06e-11;24!CL:0000236;6.72e-11;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,2.91e-35,52;CL:0000542,1.83e-34,53;CL:0000051,1.83e-34,53;CL:0000791,1.33e-32,18;CL:0000789,1.33e-32,18;CL:0002420,1.33e-32,18;CL:0002419,1.33e-32,18;CL:0000790,1.33e-32,18;CL:0000625,1.14e-28,11;CL:0000084,3.50e-26,25;CL:0000827,3.50e-26,25;CL:0002087,1.55e-14,115;CL:0000037,3.33e-13,168;CL:0002032,4.38e-13,161;CL:0000837,4.38e-13,161;CL:0002031,1.73e-12,120;CL:0000738,2.98e-12,136;CL:0000988,4.06e-12,177;CL:0000945,3.55e-11,24;CL:0000826,3.55e-11,24;CL:0000236,4.19e-10,14;CL:0000893,2.54e-07,2;CL:0002489,2.54e-07,2;CL:0000809,2.54e-07,2;CL:0000808,2.54e-07,2;CL:0000894,2.54e-07,2;CL:0000806,2.54e-07,2;CL:0000807,2.54e-07,2;CL:0000805,2.54e-07,2;CL:0002425,2.54e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000790;1.89e-32;18!CL:0000051;1.51e-22;53!CL:0002425;3.07e-07;2 | |||
|ontology_enrichment_disease=DOID:2531!2.99e-10!51;DOID:0060083!2.99e-10!51;DOID:1240!1.22e-07!39 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!1.29e-08!15;UBERON:0000179!1.29e-08!15;UBERON:0000463!1.29e-08!15;UBERON:0004177!9.25e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.60e-09;15!UBERON:0000179;2.60e-09;15!UBERON:0000463;2.60e-09;15!UBERON:0001829;2.82e-08;2!UBERON:0002370;3.46e-08;2!UBERON:0005058;3.46e-08;2!UBERON:0009113;3.46e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003408,9.94e-16,10;UBERON:0002370,7.66e-14,4;UBERON:0005058,7.66e-14,4;UBERON:0009113,7.66e-14,4;UBERON:0003295,7.66e-14,4;UBERON:0005562,7.66e-14,4;UBERON:0003351,3.16e-09,6;UBERON:0000178,3.24e-09,15;UBERON:0000179,3.24e-09,15;UBERON:0000463,3.24e-09,15;UBERON:0001829,2.83e-08,2;UBERON:0004177,6.64e-08,7;UBERON:0005057,6.64e-08,7 | |||
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| ||
|short_description=p19@PRKACB | |||
}} | }} |
Latest revision as of 11:19, 19 September 2015
Short description: | p19@PRKACB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_19_at_PRKACB_5end |
Coexpression cluster: | NA |
Association with transcript: | 116bp_to_ENST00000470673_5end |
EntrezGene: | PRKACB |
HGNC: | 9381 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 2.91e-35 | 52 |
lymphocyte | 1.83e-34 | 53 |
common lymphoid progenitor | 1.83e-34 | 53 |
mature alpha-beta T cell | 1.33e-32 | 18 |
alpha-beta T cell | 1.33e-32 | 18 |
immature T cell | 1.33e-32 | 18 |
mature T cell | 1.33e-32 | 18 |
immature alpha-beta T cell | 1.33e-32 | 18 |
CD8-positive, alpha-beta T cell | 1.14e-28 | 11 |
T cell | 3.50e-26 | 25 |
pro-T cell | 3.50e-26 | 25 |
nongranular leukocyte | 1.55e-14 | 115 |
hematopoietic stem cell | 3.33e-13 | 168 |
hematopoietic oligopotent progenitor cell | 4.38e-13 | 161 |
hematopoietic multipotent progenitor cell | 4.38e-13 | 161 |
hematopoietic lineage restricted progenitor cell | 1.73e-12 | 120 |
leukocyte | 2.98e-12 | 136 |
hematopoietic cell | 4.06e-12 | 177 |
lymphocyte of B lineage | 3.55e-11 | 24 |
pro-B cell | 3.55e-11 | 24 |
B cell | 4.19e-10 | 14 |
thymocyte | 2.54e-07 | 2 |
double negative thymocyte | 2.54e-07 | 2 |
double-positive, alpha-beta thymocyte | 2.54e-07 | 2 |
DN4 thymocyte | 2.54e-07 | 2 |
DN1 thymic pro-T cell | 2.54e-07 | 2 |
DN2 thymocyte | 2.54e-07 | 2 |
DN3 thymocyte | 2.54e-07 | 2 |
immature single positive thymocyte | 2.54e-07 | 2 |
early T lineage precursor | 2.54e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
gland of gut | 9.94e-16 | 10 |
thymus | 7.66e-14 | 4 |
hemolymphoid system gland | 7.66e-14 | 4 |
thymic region | 7.66e-14 | 4 |
pharyngeal gland | 7.66e-14 | 4 |
thymus primordium | 7.66e-14 | 4 |
pharyngeal epithelium | 3.16e-09 | 6 |
blood | 3.24e-09 | 15 |
haemolymphatic fluid | 3.24e-09 | 15 |
organism substance | 3.24e-09 | 15 |
major salivary gland | 2.83e-08 | 2 |
hemopoietic organ | 6.64e-08 | 7 |
immune organ | 6.64e-08 | 7 |