FFCP PHASE1:Hg19::chr12:56915776..56915787,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5939 | |EntrezGene=5939 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9909 | |HGNC=9909 | ||
|TSSclassifier=strong | |||
|UniProt=F5H5C8,F8VV01 | |UniProt=F5H5C8,F8VV01 | ||
|association_with_transcript=0bp_to_ENST00000542360,ENST00000549945,ENST00000550726_5end | |association_with_transcript=0bp_to_ENST00000542360,ENST00000549945,ENST00000550726_5end | ||
|cluster_id=chr12:56915776..56915787,+ | |||
|coexpression_cluster_id=C406 | |||
|description=CAGE_peak_3_at_RBMS2_5end | |description=CAGE_peak_3_at_RBMS2_5end | ||
|id=chr12:56915776..56915787,+ | |id=chr12:56915776..56915787,+ | ||
|ontology_enrichment_celltype=CL:0000197!5.03e-16!6;CL:0000098!5.03e-16!6;CL:0002167!5.03e-16!6;CL:0000075!1.80e-09!27;CL:0000710!4.69e-09!20;CL:0002077!6.85e-09!33 | |ontology_enrichment_celltype=CL:0000197!5.03e-16!6;CL:0000098!5.03e-16!6;CL:0002167!5.03e-16!6;CL:0000075!1.80e-09!27;CL:0000710!4.69e-09!20;CL:0002077!6.85e-09!33 | ||
|ontology_enrichment_celltype_v019=CL:0000197;2.76e-17;6!CL:0000098;2.76e-17;6!CL:0002167;2.76e-17;6!CL:0002588;3.67e-09;2!CL:0000710;3.86e-09;20!CL:0000075;1.57e-08;27!CL:0002077;2.57e-07;34!CL:0002539;5.44e-07;10!CL:0002166;5.87e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000197,3.02e-17,6;CL:0000098,3.02e-17,6;CL:0002167,3.02e-17,6;CL:0002588,2.75e-09,2;CL:0000710,4.46e-09,20;CL:0000075,1.74e-08,27;CL:0002077,2.56e-08,34;CL:0002539,5.28e-07,10;CL:0002166,5.88e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.10e-09;29 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001737!5.06e-23!9;UBERON:0001557!6.88e-10!19 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;8.39e-35;9!UBERON:0001557;8.39e-35;9!UBERON:0000065;1.79e-08;44!UBERON:0000072;4.13e-08;37!UBERON:0004237;5.44e-07;10!UBERON:0004695;5.44e-07;10!UBERON:0002111;5.44e-07;10!UBERON:0004178;5.44e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,6.90e-35,9;UBERON:0001557,1.14e-15,19;UBERON:0008947,1.06e-08,38;UBERON:0003258,1.06e-08,38;UBERON:0004237,5.28e-07,10;UBERON:0004695,5.28e-07,10;UBERON:0002111,5.28e-07,10;UBERON:0004178,5.28e-07,10;UBERON:0000065,6.65e-07,54 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.6893005858071,4.21886169616784,5.84248072309899,3.41552959153355,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.17366355134002,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.85372853138506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.36286865137773,0,0,0,6.62748832957129,0,0,0,0,0,0,0,0,0,0,0,0.36497735907583,0,0,0,0,0,2.36613600079688,2.52877035117153,2.41011029883482,1.65440959098591,2.39667388501647,1.66089433377768,2.02246962240247,2.94332197688019,3.46272441251751,0,0,0,0,0,0,0,0,0,3.94605963686609,0,0,0.100528972411631,0,0,0,0,0.463721619900307,4.81375646366869,0,0.462985512576611,1.71228737011138,0,0,0,0,0,0,20.1578553838631,16.7294614746016,0,0,0,0,0,0.207328115540772,0.144119953416961,0,0.253991577168676,0,0,0,0,1.50171528921959,2.00078502841405,0,0,0,0,0,0.845302752556,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,2.85273810081437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.53550464602372,2.67643483195743,4.25796520591624,4.21709093973768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.05925077125087,0,0,0,0,0,0,0,0,0,0.116210378459959,0,0,0,0,0,0,0,0,0.784349769176855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.7194678495451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.9676842561399,0,0,0,2.43799298746888,2.84922218938051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.14870036263921,1.48482340416319,0,0.994147647766298,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27600463892768,6.50342913153222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0979923974143777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0,0.321506296930038,1.51293380256957,2.07720169014593,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113312091520126,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327872630709804,0,0,0.244052529803926,0,0.573409195690071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.55924488638614,0,0,0,0,0,0.449803112163605,0,1.24411862352257,0,2.60872530905867,0,1.52322084867518,0,0,0,0.464033759878494,4.77715066438339,0,0.686791410365586,1.6837474438296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.979156554036111,1.24415452006595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41696576325585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.781078098613847,0,0,0,0,0,0,0,1.07140367175657,0,0.606965604236632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31020638566432,0.955538938977433,0,0,0,0.647428837187895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17785080268967,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.6893005858071,4.21886169616784,5.84248072309899,3.41552959153355,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.17366355134002,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.85372853138506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.36286865137773,0,0,0,6.62748832957129,0,0,0,0,0,0,0,0,0,0,0,0.36497735907583,0,0,0,0,0,2.36613600079688,2.52877035117153,2.41011029883482,1.65440959098591,2.39667388501647,1.66089433377768,2.02246962240247,2.94332197688019,3.46272441251751,0,0,0,0,0,0,0,0,0,3.94605963686609,0,0,0.100528972411631,0,0,0,0,0.463721619900307,4.81375646366869,0,0.462985512576611,1.71228737011138,0,0,0,0,0,0,20.1578553838631,16.7294614746016,0,0,0,0,0,0.207328115540772,0.144119953416961,0,0.253991577168676,0,0,0,0,1.50171528921959,2.00078502841405,0,0,0,0,0,0.845302752556,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,2.85273810081437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.53550464602372,2.67643483195743,4.25796520591624,4.21709093973768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.05925077125087,0,0,0,0,0,0,0,0,0,0.116210378459959,0,0,0,0,0,0,0,0,0.784349769176855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.7194678495451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.9676842561399,0,0,0,2.43799298746888,2.84922218938051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.14870036263921,1.48482340416319,0,0.994147647766298,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27600463892768,6.50342913153222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0979923974143777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0,0.321506296930038,1.51293380256957,2.07720169014593,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113312091520126,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327872630709804,0,0,0.244052529803926,0,0.573409195690071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.55924488638614,0,0,0,0,0,0.449803112163605,0,1.24411862352257,0,2.60872530905867,0,1.52322084867518,0,0,0,0.464033759878494,4.77715066438339,0,0.686791410365586,1.6837474438296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.979156554036111,1.24415452006595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41696576325585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.781078098613847,0,0,0,0,0,0,0,1.07140367175657,0,0.606965604236632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31020638566432,0.955538938977433,0,0,0,0.647428837187895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17785080268967,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p3@RBMS2 | |short_description=p3@RBMS2 | ||
}} | }} |
Latest revision as of 11:21, 19 September 2015
Short description: | p3@RBMS2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RBMS2_5end |
Coexpression cluster: | C406_Mallassezderived_Mesothelial_mesenchymal_chorionic_Gingival_Placental_Prostate |
Association with transcript: | 0bp_to_ENST00000542360, ENST00000549945, ENST00000550726_5end |
EntrezGene: | RBMS2 |
HGNC: | 9909 |
UniProt: | F5H5C8F8VV01 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
receptor cell | 3.02e-17 | 6 |
sensory epithelial cell | 3.02e-17 | 6 |
olfactory epithelial cell | 3.02e-17 | 6 |
smooth muscle cell of the umbilical vein | 2.75e-09 | 2 |
neurecto-epithelial cell | 4.46e-09 | 20 |
columnar/cuboidal epithelial cell | 1.74e-08 | 27 |
ecto-epithelial cell | 2.56e-08 | 34 |
aortic smooth muscle cell | 5.28e-07 | 10 |
epithelial cell of Malassez | 5.88e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
larynx | 6.90e-35 | 9 |
upper respiratory tract | 1.14e-15 | 19 |
respiratory primordium | 1.06e-08 | 38 |
endoderm of foregut | 1.06e-08 | 38 |
blood vessel smooth muscle | 5.28e-07 | 10 |
arterial system smooth muscle | 5.28e-07 | 10 |
artery smooth muscle tissue | 5.28e-07 | 10 |
aorta smooth muscle tissue | 5.28e-07 | 10 |
respiratory tract | 6.65e-07 | 54 |