FFCP PHASE1:Hg19::chr12:58135980..58135992,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:58135980..58135992,-
|short_description=p3@AGAP2
|description=CAGE_peak_3_at_AGAP2_5end
|association_with_transcript=-36bp_to_NM_014770_5end
|EntrezGene=...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=116986 | |EntrezGene=116986 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16921 | |HGNC=16921 | ||
|TSSclassifier=strong | |||
|UniProt=Q99490 | |UniProt=Q99490 | ||
|association_with_transcript=-36bp_to_NM_014770_5end | |||
|cluster_id=chr12:58135980..58135992,- | |||
|description=CAGE_peak_3_at_AGAP2_5end | |||
|id=chr12:58135980..58135992,- | |||
|ontology_enrichment_celltype=CL:0000037!2.21e-52!172;CL:0000566!2.21e-52!172;CL:0000988!6.15e-51!182;CL:0002032!2.02e-47!165;CL:0000837!2.02e-47!165;CL:0000738!1.40e-46!140;CL:0000542!1.08e-37!53;CL:0000051!1.08e-37!53;CL:0000838!6.38e-37!52;CL:0002087!2.38e-35!119;CL:0002031!4.42e-34!124;CL:0000945!3.77e-18!24;CL:0000826!3.77e-18!24;CL:0000084!1.15e-16!25;CL:0000827!1.15e-16!25;CL:0000763!3.54e-15!112;CL:0000049!3.54e-15!112;CL:0000791!2.64e-12!18;CL:0000789!2.64e-12!18;CL:0002420!2.64e-12!18;CL:0002419!2.64e-12!18;CL:0000790!2.64e-12!18;CL:0000134!2.20e-09!358;CL:0000766!2.48e-09!76;CL:0002320!1.04e-08!365;CL:0000236!1.27e-08!14;CL:0000451!2.33e-07!10;CL:0000990!2.94e-07!8;CL:0000625!3.41e-07!11 | |||
|ontology_enrichment_celltype_v019=CL:0000084;3.08e-21;25!CL:0000791;4.92e-17;18!CL:0000789;4.92e-17;18!CL:0002419;4.92e-17;18!CL:0000625;5.08e-13;11!CL:0000542;1.44e-12;53!CL:0000771;3.16e-10;2!CL:0000094;6.59e-09;8!CL:0000624;9.59e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,3.26e-24,52;CL:0000542,1.14e-23,53;CL:0000051,1.14e-23,53;CL:0000084,2.31e-21,25;CL:0000827,2.31e-21,25;CL:0000791,1.80e-17,18;CL:0000789,1.80e-17,18;CL:0002420,1.80e-17,18;CL:0002419,1.80e-17,18;CL:0000790,1.80e-17,18;CL:0000738,4.02e-17,136;CL:0000037,4.55e-15,168;CL:0000988,5.93e-14,177;CL:0000625,2.21e-13,11;CL:0002087,2.91e-13,115;CL:0002032,2.48e-12,161;CL:0000837,2.48e-12,161;CL:0002031,3.12e-11,120;CL:0000771,3.21e-10,2;CL:0000094,4.34e-09,8;CL:0000624,7.46e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000790;4.92e-17;18!CL:0000051;1.44e-12;53 | |||
|ontology_enrichment_disease=DOID:2531!3.68e-19!51;DOID:0060083!3.68e-19!51;DOID:1240!1.83e-12!39;DOID:0060058!4.89e-11!10;DOID:8692!3.73e-08!31 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.21e-16!102;UBERON:0003061!2.21e-16!102;UBERON:0002193!3.05e-15!112;UBERON:0000178!5.47e-11!15;UBERON:0000179!5.47e-11!15;UBERON:0000463!5.47e-11!15;UBERON:0004177!1.58e-08!7;UBERON:0002384!3.79e-08!375 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.54e-09;15!UBERON:0000179;1.54e-09;15!UBERON:0000463;1.54e-09;15!UBERON:0002370;2.83e-09;2!UBERON:0005058;2.83e-09;2!UBERON:0009113;2.83e-09;2!UBERON:0002390;2.72e-08;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.02e-09,15;UBERON:0000179,2.02e-09,15;UBERON:0000463,2.02e-09,15 | |||
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| ||
|short_description=p3@AGAP2 | |||
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Latest revision as of 16:17, 19 September 2015
Short description: | p3@AGAP2 |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_AGAP2_5end |
Coexpression cluster: | NA |
Association with transcript: | -36bp_to_NM_014770_5end |
EntrezGene: | AGAP2 |
HGNC: | 16921 |
UniProt: | Q99490 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 3.26e-24 | 52 |
lymphocyte | 1.14e-23 | 53 |
common lymphoid progenitor | 1.14e-23 | 53 |
T cell | 2.31e-21 | 25 |
pro-T cell | 2.31e-21 | 25 |
mature alpha-beta T cell | 1.80e-17 | 18 |
alpha-beta T cell | 1.80e-17 | 18 |
immature T cell | 1.80e-17 | 18 |
mature T cell | 1.80e-17 | 18 |
immature alpha-beta T cell | 1.80e-17 | 18 |
leukocyte | 4.02e-17 | 136 |
hematopoietic stem cell | 4.55e-15 | 168 |
hematopoietic cell | 5.93e-14 | 177 |
CD8-positive, alpha-beta T cell | 2.21e-13 | 11 |
nongranular leukocyte | 2.91e-13 | 115 |
hematopoietic oligopotent progenitor cell | 2.48e-12 | 161 |
hematopoietic multipotent progenitor cell | 2.48e-12 | 161 |
hematopoietic lineage restricted progenitor cell | 3.12e-11 | 120 |
eosinophil | 3.21e-10 | 2 |
granulocyte | 4.34e-09 | 8 |
CD4-positive, alpha-beta T cell | 7.46e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
blood | 2.02e-09 | 15 |
haemolymphatic fluid | 2.02e-09 | 15 |
organism substance | 2.02e-09 | 15 |