FFCP PHASE1:Hg19::chr14:29236460..29236467,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2290 | |EntrezGene=2290 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3811 | |HGNC=3811 | ||
|TSSclassifier=strong | |||
|UniProt=P55316 | |UniProt=P55316 | ||
|association_with_transcript=173bp_to_ENST00000313071,NM_005249,uc001wqe.2_5end | |association_with_transcript=173bp_to_ENST00000313071,NM_005249,uc001wqe.2_5end | ||
|cluster_id=chr14:29236460..29236467,+ | |||
|coexpression_cluster_id=C361 | |||
|description=CAGE_peak_12_at_FOXG1_5end | |description=CAGE_peak_12_at_FOXG1_5end | ||
|id=chr14:29236460..29236467,+ | |id=chr14:29236460..29236467,+ | ||
|ontology_enrichment_celltype=CL:0002319!1.57e-19!25;CL:0000133!5.50e-15!59;CL:0000243!9.63e-13!15;CL:0000125!9.63e-13!15;CL:0000030!9.63e-13!15;CL:0000339!9.63e-13!15;CL:0000221!1.06e-11!71;CL:0000095!3.19e-11!17;CL:0000123!3.19e-11!17;CL:0000128!9.14e-11!7;CL:0000126!9.14e-11!7;CL:0000127!9.14e-11!7;CL:0002453!9.14e-11!7;CL:0000047!1.70e-10!8;CL:0002605!6.21e-10!3;CL:0000064!1.84e-09!3;CL:0005012!1.84e-09!3;CL:0000067!1.84e-09!3;CL:0002304!1.84e-09!3;CL:0000333!2.13e-07!41;CL:0000569!3.78e-07!4;CL:0000011!3.78e-07!4 | |ontology_enrichment_celltype=CL:0002319!1.57e-19!25;CL:0000133!5.50e-15!59;CL:0000243!9.63e-13!15;CL:0000125!9.63e-13!15;CL:0000030!9.63e-13!15;CL:0000339!9.63e-13!15;CL:0000221!1.06e-11!71;CL:0000095!3.19e-11!17;CL:0000123!3.19e-11!17;CL:0000128!9.14e-11!7;CL:0000126!9.14e-11!7;CL:0000127!9.14e-11!7;CL:0002453!9.14e-11!7;CL:0000047!1.70e-10!8;CL:0002605!6.21e-10!3;CL:0000064!1.84e-09!3;CL:0005012!1.84e-09!3;CL:0000067!1.84e-09!3;CL:0002304!1.84e-09!3;CL:0000333!2.13e-07!41;CL:0000569!3.78e-07!4;CL:0000011!3.78e-07!4 | ||
|ontology_enrichment_celltype_v019=CL:0000047;4.96e-32;2!CL:0002319;2.23e-09;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,5.26e-18,8;CL:0002319,2.06e-09,25 | |||
|ontology_enrichment_development_v019=UBERON:0010122;5.71e-09;2!UBERON:0009117;5.11e-07;10!UBERON:0005564;5.11e-07;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001893!2.86e-58!34;UBERON:0001869!7.89e-58!32;UBERON:0002791!1.09e-55!33;UBERON:0002780!6.76e-51!41;UBERON:0001890!6.76e-51!41;UBERON:0006240!6.76e-51!41;UBERON:0001017!6.27e-50!82;UBERON:0002020!6.89e-50!34;UBERON:0003528!6.89e-50!34;UBERON:0003080!1.57e-49!42;UBERON:0005743!3.56e-47!86;UBERON:0000073!3.96e-44!94;UBERON:0001016!3.96e-44!94;UBERON:0000956!2.11e-43!25;UBERON:0000203!2.11e-43!25;UBERON:0000955!1.07e-41!69;UBERON:0006238!1.07e-41!69;UBERON:0003056!6.91e-40!61;UBERON:0001049!1.84e-37!57;UBERON:0005068!1.84e-37!57;UBERON:0006241!1.84e-37!57;UBERON:0007135!1.84e-37!57;UBERON:0002616!6.04e-36!59;UBERON:0002619!1.51e-35!22;UBERON:0001950!1.31e-34!20;UBERON:0003075!3.71e-30!86;UBERON:0007284!3.71e-30!86;UBERON:0002346!1.92e-28!90;UBERON:0000153!2.29e-27!129;UBERON:0007811!2.29e-27!129;UBERON:0000033!6.50e-26!123;UBERON:0004121!1.20e-25!169;UBERON:0000924!8.33e-25!173;UBERON:0006601!8.33e-25!173;UBERON:0001872!1.66e-15!5;UBERON:0007023!5.41e-15!115;UBERON:0000369!5.62e-13!4;UBERON:0002435!5.62e-13!4;UBERON:0000204!5.62e-13!4;UBERON:0010082!5.62e-13!4;UBERON:0000200!1.03e-12!6;UBERON:0009663!2.89e-11!7;UBERON:0002021!5.49e-11!5;UBERON:0005383!3.91e-10!3;UBERON:0005382!3.91e-10!3;UBERON:0002771!7.02e-10!3;UBERON:0000064!1.05e-09!219;UBERON:0001871!1.39e-09!7;UBERON:0000025!1.58e-09!194;UBERON:0001778!1.84e-09!3;UBERON:0001775!1.84e-09!3;UBERON:0002308!1.12e-08!9;UBERON:0002420!1.12e-08!9;UBERON:0000125!1.12e-08!9;UBERON:0007245!1.12e-08!9;UBERON:0010009!1.12e-08!9;UBERON:0010011!1.12e-08!9;UBERON:0000454!1.12e-08!9;UBERON:0000477!9.62e-08!286;UBERON:0001873!3.01e-07!2;UBERON:0010122!3.01e-07!2;UBERON:0000488!3.39e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0002021;2.94e-13;5!UBERON:0001950;5.53e-12;20!UBERON:0002791;1.35e-11;32!UBERON:0001869;1.71e-11;32!UBERON:0002619;5.74e-11;22!UBERON:0000956;9.83e-10;25!UBERON:0000203;9.83e-10;25!UBERON:0001893;2.00e-09;34!UBERON:0001016;2.32e-09;83!UBERON:0003528;3.37e-09;34!UBERON:0002020;3.37e-09;34!UBERON:0001873;5.71e-09;2!UBERON:0001017;5.96e-09;75!UBERON:0002360;7.49e-09;2!UBERON:0000094;7.49e-09;2!UBERON:0010743;7.49e-09;2!UBERON:0000473;1.47e-08;8!UBERON:0002780;1.93e-08;41!UBERON:0001890;1.93e-08;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.77e-17,81;UBERON:0001016,1.11e-15,89;UBERON:0002021,3.03e-13,5;UBERON:0001950,6.02e-12,20;UBERON:0002791,1.33e-11,32;UBERON:0001869,1.33e-11,32;UBERON:0003528,6.12e-11,34;UBERON:0002020,6.12e-11,34;UBERON:0001893,6.12e-11,34;UBERON:0002619,6.21e-11,22;UBERON:0000956,1.05e-09,25;UBERON:0000203,1.05e-09,25;UBERON:0002780,4.08e-09,41;UBERON:0001890,4.08e-09,41;UBERON:0003080,4.08e-09,41;UBERON:0006240,4.08e-09,41;UBERON:0001873,5.49e-09,2;UBERON:0010122,5.49e-09,2;UBERON:0002360,7.49e-09,2;UBERON:0000094,7.49e-09,2;UBERON:0010743,7.49e-09,2;UBERON:0000473,1.53e-08,8;UBERON:0004121,7.89e-08,171;UBERON:0000924,7.89e-08,171;UBERON:0006601,7.89e-08,171;UBERON:0000955,1.33e-07,68;UBERON:0006238,1.33e-07,68;UBERON:0011216,4.25e-07,223;UBERON:0000073,4.43e-07,53;UBERON:0002616,4.43e-07,53 | |||
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| ||
|short_description=p12@FOXG1 | |short_description=p12@FOXG1 | ||
}} | }} |
Latest revision as of 16:27, 19 September 2015
Short description: | p12@FOXG1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_FOXG1_5end |
Coexpression cluster: | C361_Neural_Astrocyte_Neurons_spinal_Chondrocyte_Fibroblast_sacrococcigeal |
Association with transcript: | 173bp_to_ENST00000313071, NM_005249, uc001wqe.2_5end |
EntrezGene: | FOXG1 |
HGNC: | 3811 |
UniProt: | P55316 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 5.26e-18 | 8 |
neural cell | 2.06e-09 | 25 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.77e-17 | 81 |
nervous system | 1.11e-15 | 89 |
occipital lobe | 3.03e-13 | 5 |
neocortex | 6.02e-12 | 20 |
regional part of telencephalon | 1.33e-11 | 32 |
cerebral hemisphere | 1.33e-11 | 32 |
brain grey matter | 6.12e-11 | 34 |
gray matter | 6.12e-11 | 34 |
telencephalon | 6.12e-11 | 34 |
regional part of cerebral cortex | 6.21e-11 | 22 |
cerebral cortex | 1.05e-09 | 25 |
pallium | 1.05e-09 | 25 |
regional part of forebrain | 4.08e-09 | 41 |
forebrain | 4.08e-09 | 41 |
anterior neural tube | 4.08e-09 | 41 |
future forebrain | 4.08e-09 | 41 |
caudate nucleus | 5.49e-09 | 2 |
future caudate nucleus | 5.49e-09 | 2 |
meninx | 7.49e-09 | 2 |
membrane organ | 7.49e-09 | 2 |
meningeal cluster | 7.49e-09 | 2 |
testis | 1.53e-08 | 8 |
ectoderm-derived structure | 7.89e-08 | 171 |
ectoderm | 7.89e-08 | 171 |
presumptive ectoderm | 7.89e-08 | 171 |
brain | 1.33e-07 | 68 |
future brain | 1.33e-07 | 68 |
organ system subdivision | 4.25e-07 | 223 |
regional part of nervous system | 4.43e-07 | 53 |
regional part of brain | 4.43e-07 | 53 |