FFCP PHASE1:Hg19::chr1:89530952..89530967,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2633 | |EntrezGene=2633 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4182 | |HGNC=4182 | ||
|TSSclassifier=strong | |||
|UniProt=F5H2M9 | |UniProt=F5H2M9 | ||
|association_with_transcript=0bp_to_ENST00000542693_5end | |association_with_transcript=0bp_to_ENST00000542693_5end | ||
|cluster_id=chr1:89530952..89530967,- | |||
|coexpression_cluster_id=C7 | |coexpression_cluster_id=C7 | ||
|description=CAGE_peak_3_at_GBP1_5end | |description=CAGE_peak_3_at_GBP1_5end | ||
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|ontology_enrichment_celltype=CL:0002057!2.41e-17!42;CL:0000860!8.84e-16!45;CL:0002009!3.93e-11!65;CL:0002194!4.30e-11!63;CL:0000576!4.30e-11!63;CL:0000040!4.30e-11!63;CL:0000559!4.30e-11!63;CL:0000766!1.25e-10!76;CL:0000048!2.21e-09!430;CL:0000723!8.99e-09!436;CL:0000557!2.44e-08!71;CL:0000839!8.71e-08!70;CL:0000034!1.65e-07!444 | |ontology_enrichment_celltype=CL:0002057!2.41e-17!42;CL:0000860!8.84e-16!45;CL:0002009!3.93e-11!65;CL:0002194!4.30e-11!63;CL:0000576!4.30e-11!63;CL:0000040!4.30e-11!63;CL:0000559!4.30e-11!63;CL:0000766!1.25e-10!76;CL:0000048!2.21e-09!430;CL:0000723!8.99e-09!436;CL:0000557!2.44e-08!71;CL:0000839!8.71e-08!70;CL:0000034!1.65e-07!444 | ||
|ontology_enrichment_celltype_v019=CL:0000860;8.30e-15;33!CL:0002057;8.30e-15;33!CL:0000473;4.77e-12;39!CL:0000234;4.77e-12;39!CL:0000576;4.33e-10;48 | |ontology_enrichment_celltype_v019=CL:0000860;8.30e-15;33!CL:0002057;8.30e-15;33!CL:0000473;4.77e-12;39!CL:0000234;4.77e-12;39!CL:0000576;4.33e-10;48 | ||
|ontology_enrichment_celltype_v019_2=CL:0000860,4.60e-18,42;CL:0002057,4.60e-18,42;CL:0000473,5.33e-17,48;CL:0000234,5.33e-17,48;CL:0002009,5.91e-13,61;CL:0002194,6.11e-13,59;CL:0000576,6.11e-13,59;CL:0000040,6.11e-13,59;CL:0000559,6.11e-13,59;CL:0000766,2.69e-12,72;CL:0000048,3.47e-11,427;CL:0000723,1.34e-10,433;CL:0000557,8.08e-10,67;CL:0000839,2.69e-09,66;CL:0000034,2.86e-09,441;CL:0000134,6.06e-07,354 | |||
|ontology_enrichment_development_v019=CL:0002057;3.48e-13;42 | |ontology_enrichment_development_v019=CL:0002057;3.48e-13;42 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!1.15e-12!167;UBERON:0002193!1.13e-09!112;UBERON:0002390!1.48e-09!102;UBERON:0003061!1.48e-09!102;UBERON:0002405!5.23e-08!115;UBERON:0002371!6.15e-08!80;UBERON:0004765!1.24e-07!101;UBERON:0001434!1.24e-07!101;UBERON:0001474!1.82e-07!86 | |ontology_enrichment_uberon=UBERON:0002204!1.15e-12!167;UBERON:0002193!1.13e-09!112;UBERON:0002390!1.48e-09!102;UBERON:0003061!1.48e-09!102;UBERON:0002405!5.23e-08!115;UBERON:0002371!6.15e-08!80;UBERON:0004765!1.24e-07!101;UBERON:0001434!1.24e-07!101;UBERON:0001474!1.82e-07!86 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002204,2.78e-14,167;UBERON:0000926,3.50e-12,315;UBERON:0004120,3.50e-12,315;UBERON:0006603,3.50e-12,315;UBERON:0002390,6.36e-11,98;UBERON:0003061,6.36e-11,98;UBERON:0002193,7.02e-11,108;UBERON:0002405,6.62e-10,93;UBERON:0002371,2.53e-09,76;UBERON:0004765,2.55e-09,90;UBERON:0001474,6.22e-09,82;UBERON:0001434,8.21e-09,100;UBERON:0003081,3.97e-08,203;UBERON:0002384,4.46e-07,371 | |||
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| ||
|short_description=p3@GBP1 | |short_description=p3@GBP1 | ||
}} | }} |
Latest revision as of 16:29, 19 September 2015
Short description: | p3@GBP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_GBP1_5end |
Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
Association with transcript: | 0bp_to_ENST00000542693_5end |
EntrezGene: | GBP1 |
HGNC: | 4182 |
UniProt: | F5H2M9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 4.60e-18 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.60e-18 | 42 |
defensive cell | 5.33e-17 | 48 |
phagocyte | 5.33e-17 | 48 |
macrophage dendritic cell progenitor | 5.91e-13 | 61 |
monopoietic cell | 6.11e-13 | 59 |
monocyte | 6.11e-13 | 59 |
monoblast | 6.11e-13 | 59 |
promonocyte | 6.11e-13 | 59 |
myeloid leukocyte | 2.69e-12 | 72 |
multi fate stem cell | 3.47e-11 | 427 |
somatic stem cell | 1.34e-10 | 433 |
granulocyte monocyte progenitor cell | 8.08e-10 | 67 |
myeloid lineage restricted progenitor cell | 2.69e-09 | 66 |
stem cell | 2.86e-09 | 441 |
mesenchymal cell | 6.06e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system | 2.78e-14 | 167 |
mesoderm | 3.50e-12 | 315 |
mesoderm-derived structure | 3.50e-12 | 315 |
presumptive mesoderm | 3.50e-12 | 315 |
hematopoietic system | 6.36e-11 | 98 |
blood island | 6.36e-11 | 98 |
hemolymphoid system | 7.02e-11 | 108 |
immune system | 6.62e-10 | 93 |
bone marrow | 2.53e-09 | 76 |
skeletal element | 2.55e-09 | 90 |
bone element | 6.22e-09 | 82 |
skeletal system | 8.21e-09 | 100 |
lateral plate mesoderm | 3.97e-08 | 203 |
connective tissue | 4.46e-07 | 371 |