FFCP PHASE1:Hg19::chr1:89530952..89530967,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:89530952..89530967,- to FFCP PHASE1:Hg19::chr1:89530952..89530967,-: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2633 | |EntrezGene=2633 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4182 | |HGNC=4182 | ||
|TSSclassifier=strong | |||
|UniProt=F5H2M9 | |UniProt=F5H2M9 | ||
|association_with_transcript=0bp_to_ENST00000542693_5end | |||
|cluster_id=chr1:89530952..89530967,- | |||
|coexpression_cluster_id=C7 | |||
|description=CAGE_peak_3_at_GBP1_5end | |||
|id=chr1:89530952..89530967,- | |||
|ontology_enrichment_celltype=CL:0002057!2.41e-17!42;CL:0000860!8.84e-16!45;CL:0002009!3.93e-11!65;CL:0002194!4.30e-11!63;CL:0000576!4.30e-11!63;CL:0000040!4.30e-11!63;CL:0000559!4.30e-11!63;CL:0000766!1.25e-10!76;CL:0000048!2.21e-09!430;CL:0000723!8.99e-09!436;CL:0000557!2.44e-08!71;CL:0000839!8.71e-08!70;CL:0000034!1.65e-07!444 | |||
|ontology_enrichment_celltype_v019=CL:0000860;8.30e-15;33!CL:0002057;8.30e-15;33!CL:0000473;4.77e-12;39!CL:0000234;4.77e-12;39!CL:0000576;4.33e-10;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,4.60e-18,42;CL:0002057,4.60e-18,42;CL:0000473,5.33e-17,48;CL:0000234,5.33e-17,48;CL:0002009,5.91e-13,61;CL:0002194,6.11e-13,59;CL:0000576,6.11e-13,59;CL:0000040,6.11e-13,59;CL:0000559,6.11e-13,59;CL:0000766,2.69e-12,72;CL:0000048,3.47e-11,427;CL:0000723,1.34e-10,433;CL:0000557,8.08e-10,67;CL:0000839,2.69e-09,66;CL:0000034,2.86e-09,441;CL:0000134,6.06e-07,354 | |||
|ontology_enrichment_development_v019=CL:0002057;3.48e-13;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!1.15e-12!167;UBERON:0002193!1.13e-09!112;UBERON:0002390!1.48e-09!102;UBERON:0003061!1.48e-09!102;UBERON:0002405!5.23e-08!115;UBERON:0002371!6.15e-08!80;UBERON:0004765!1.24e-07!101;UBERON:0001434!1.24e-07!101;UBERON:0001474!1.82e-07!86 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002204,2.78e-14,167;UBERON:0000926,3.50e-12,315;UBERON:0004120,3.50e-12,315;UBERON:0006603,3.50e-12,315;UBERON:0002390,6.36e-11,98;UBERON:0003061,6.36e-11,98;UBERON:0002193,7.02e-11,108;UBERON:0002405,6.62e-10,93;UBERON:0002371,2.53e-09,76;UBERON:0004765,2.55e-09,90;UBERON:0001474,6.22e-09,82;UBERON:0001434,8.21e-09,100;UBERON:0003081,3.97e-08,203;UBERON:0002384,4.46e-07,371 | |||
|phase1_expression=2.72517568905835,1.92690471501885,2.96004248601539,2.00146596706261,3.12872766099101,4.36169262050184,10.1319951267324,1.89515962028049,1.30592814099919,0.245733936501509,0,0,0,1.23766352960047,0.662794751455832,6.05092631806598,4.21886169616784,5.84248072309899,3.41552959153355,2.33930010345897,1.63200552995402,1.88072832886853,2.0036519099174,1.50561867580173,0.753255837568817,0.305653622991805,0.656804715599566,0.472264687882075,1.57345710739562,3.45446458287491,1.23852898652861,0,0,0.369754010166788,0.542270404062111,0,0.587200878669695,1.66198622559563,0.802177789880567,2.38711957787437,2.01523926815932,1.94336199611388,2.83333124397605,1.59938062657521,3.02300754951048,3.63876091781724,8.36744532860465,3.28934310417461,9.29119112685311,72.4984828651819,65.3209801649207,98.8495720934286,10.3423704220986,3.87290810150296,5.41705946377367,2.25890807451126,3.0019676506363,8.09004544002305,21.4258724659632,12.8371610830437,13.4260796417799,86.4210406489196,90.9554278754641,66.917285833633,17.9929727949722,7.94339314567596,11.2108004819203,68.8421342803477,52.6697747604403,82.5317609879443,10.8971910474006,12.1531619875896,24.0511414455072,12.4640618924046,12.5436536979376,14.0471292490612,2.92054440980887,3.75442232103766,5.94684670779196,3.99017841237748,7.35991705636633,9.31587184199633,0,0.546138611262131,0,1.70692089026603,0.800791974072025,1.14950487990897,0.661044872784862,0.954053754535364,0,0.587237189370939,0,1.32171328579026,0.560508562981536,0.526768169550154,2.9506465517075,2.35806457649499,1.43921049299656,2.00623794468814,1.30368906653436,0.946895611469467,1.94826728407911,4.45641827540694,6.77593587192126,10.6336269400138,11.3737622781307,4.61128751012431,5.9827299877544,4.43982342429925,3.86890024900188,4.05724320029073,2.37258501059297,1.87278579662799,1.04535523804977,6.79856056185397,4.59864592322305,5.84166657320471,10.3738073727996,2.54852331459277,1.95325036156926,1.90090408889675,3.01150238155546,3.4556385011693,1.24930726552346,3.31488152861624,0.821127996921047,3.42731463482045,1.06976078313403,0.724122019413995,0,1.34140171940727,3.19656404608826,2.1686349143074,5.0133791063589,1.73815822752988,1.5905718941022,3.40644409211845,8.50813354476611,8.86917589850256,4.21606971327005,2.68507104770311,0,0.370784442784429,1.29818957461873,2.26368658489047,2.79211717089617,0,0.571994910780128,0,0.993812036833525,0.860234595106124,1.04142150482278,0,0.419499436209906,1.92582629358047,1.46296476575767,1.29208379584664,4.26919515224052,3.01248551488203,4.02829317109147,3.04108842287405,1.95249646038536,1.47065232138347,4.0507097394088,2.05389375053383,0.44905874525234,0.337834441449967,0,0.949265659568129,0.183201743930407,10.5424333948851,19.3890132074163,0,5.96366342034382,4.17880688493113,5.42877641334197,2.29469296599051,2.83734705758686,3.36406560085384,5.33744978648525,1.48000529050296,4.35695449559673,1.75123873690594,0.326923806226917,1.81628913173918,4.03323147135999,1.87457145467037,0.624320153660641,1.1409436430889,1.04614076386261,0.117434498643765,0.161872944368132,0.842704840213491,3.26646674007829,0.61417158655884,1.85986406116378,11.8800285728205,4.94533858557114,0,1.43723628363248,0.841680569770331,0.125118519871964,1.93944880838928,3.95079858792754,2.75839016219118,3.15499923703853,4.65071950956086,6.27863724911017,6.40672166455702,6.78182083710598,5.10154863343484,5.35873152039882,10.8209026819164,4.46680455195816,6.91982962189192,5.45647228902712,10.8546522924969,8.74474037101844,3.07127507955743,7.10019185033229,5.13835700960965,4.23901480776219,3.09217365061275,1.63647672354501,5.44928731239107,0,0,0,0,0,0,25.0319251727706,18.0107462694008,9.66944449467364,7.89425477654364,2.88751792667834,0.354920400119532,0.168584690078102,0,0.441175890929576,0.217879444092406,0.237270619111097,0.674156540800822,0.196221465125346,0.38474715694639,0,0,3.2925920906512,0,3.80265104465493,4.91413608338813,2.95394953340702,0,0.245976877086227,12.3528823414938,2.30475599358114,0,0.502644862058154,3.14800713539001,0.651616610620649,0,2.88662684050547,1.507095264676,12.5627302832329,5.34155856715973,2.31492756288305,3.42457474022277,0,0,3.69325509131096,5.85010662848094,2.0808362720422,2.81201501960331,7.8951600253464,5.81277898693785,0.53735113621709,0,0,0.985326475791887,0,0,0,0.12624243342638,0.126995788584338,0,0,0,0.102827492703324,0,0.857479297891735,0.224262168690721,2.1798003441664,0.95339771567235,2.19761916788222,0,1.690605505112,15.9562869950922,6.24044621468197,1.02882949704857,0,0,6.71996570193294,0.542621605391443,2.46972101034231,2.93162565864362,4.6200953336531,2.37585561880029,5.72734816413214,6.10073421020206,4.89867656792079,1.2162378064119,2.00902836572851,0,6.46987109827273,0,0,3.4747513600219,0.61642896765115,3.76028022803781,0.336255431980582,3.15249216323084,1.94064817373566,1.54011643535698,0,2.60279707715243,0,0.167516265334349,0,9.73709131131337,5.9832291840805,6.63064821497657,4.9076596687656,1.00034104211935,2.17012018959788,7.07100929204744,6.958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| ||
|short_description=p3@GBP1 | |||
}} | }} |
Latest revision as of 16:29, 19 September 2015
Short description: | p3@GBP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_GBP1_5end |
Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
Association with transcript: | 0bp_to_ENST00000542693_5end |
EntrezGene: | GBP1 |
HGNC: | 4182 |
UniProt: | F5H2M9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 4.60e-18 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.60e-18 | 42 |
defensive cell | 5.33e-17 | 48 |
phagocyte | 5.33e-17 | 48 |
macrophage dendritic cell progenitor | 5.91e-13 | 61 |
monopoietic cell | 6.11e-13 | 59 |
monocyte | 6.11e-13 | 59 |
monoblast | 6.11e-13 | 59 |
promonocyte | 6.11e-13 | 59 |
myeloid leukocyte | 2.69e-12 | 72 |
multi fate stem cell | 3.47e-11 | 427 |
somatic stem cell | 1.34e-10 | 433 |
granulocyte monocyte progenitor cell | 8.08e-10 | 67 |
myeloid lineage restricted progenitor cell | 2.69e-09 | 66 |
stem cell | 2.86e-09 | 441 |
mesenchymal cell | 6.06e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system | 2.78e-14 | 167 |
mesoderm | 3.50e-12 | 315 |
mesoderm-derived structure | 3.50e-12 | 315 |
presumptive mesoderm | 3.50e-12 | 315 |
hematopoietic system | 6.36e-11 | 98 |
blood island | 6.36e-11 | 98 |
hemolymphoid system | 7.02e-11 | 108 |
immune system | 6.62e-10 | 93 |
bone marrow | 2.53e-09 | 76 |
skeletal element | 2.55e-09 | 90 |
bone element | 6.22e-09 | 82 |
skeletal system | 8.21e-09 | 100 |
lateral plate mesoderm | 3.97e-08 | 203 |
connective tissue | 4.46e-07 | 371 |