FFCP PHASE1:Hg19::chr6:108053352..108053354,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=256380 | |EntrezGene=256380 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21397 | |HGNC=21397 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-45bp_to_ENST00000476798_5end | |association_with_transcript=-45bp_to_ENST00000476798_5end | ||
|cluster_id=chr6:108053352..108053354,- | |||
|coexpression_cluster_id=C98 | |coexpression_cluster_id=C98 | ||
|description=CAGE_peak_3_at_SCML4_5end | |description=CAGE_peak_3_at_SCML4_5end | ||
|id=chr6:108053352..108053354,- | |id=chr6:108053352..108053354,- | ||
|ontology_enrichment_celltype=CL:0000791;2.33e-39;18!CL:0000789;2.33e-39;18!CL:0002419;2.33e-39;18!CL:0000625;5.00e-36;11!CL:0000084;3.43e-27;25!CL:0000542;7.26e-17;53!CL:0000226;6.90e-10;3!CL:0000842;6.90e-10;3!CL:0000623;1.03e-09;3!CL:0000624;4.26e-09;6!CL:0002087;1.28e-07;104 | |ontology_enrichment_celltype=CL:0000791!1.02e-27!18;CL:0000789!1.02e-27!18;CL:0002420!1.02e-27!18;CL:0002419!1.02e-27!18;CL:0000790!1.02e-27!18;CL:0000838!1.36e-26!52;CL:0000542!6.85e-26!53;CL:0000051!6.85e-26!53;CL:0000625!7.97e-21!11;CL:0000084!2.32e-18!25;CL:0000827!2.32e-18!25;CL:0000738!6.96e-17!140;CL:0002087!1.62e-15!119;CL:0002031!4.04e-13!124;CL:0000037!3.51e-11!172;CL:0000566!3.51e-11!172;CL:0000624!1.61e-10!6;CL:0002032!5.79e-10!165;CL:0000837!5.79e-10!165;CL:0000988!7.44e-10!182;CL:0000236!8.34e-10!14;CL:0000945!4.18e-07!24;CL:0000826!4.18e-07!24 | ||
| | |ontology_enrichment_celltype_v019=CL:0000791;2.33e-39;18!CL:0000789;2.33e-39;18!CL:0002419;2.33e-39;18!CL:0000625;5.00e-36;11!CL:0000084;3.43e-27;25!CL:0000542;7.26e-17;53!CL:0000226;6.90e-10;3!CL:0000842;6.90e-10;3!CL:0000623;1.03e-09;3!CL:0000624;4.26e-09;6!CL:0002087;1.28e-07;104 | ||
|ontology_enrichment_disease=DOID:1909;4.02e-07;2 | |ontology_enrichment_celltype_v019_2=CL:0000791,2.35e-39,18;CL:0000789,2.35e-39,18;CL:0002420,2.35e-39,18;CL:0002419,2.35e-39,18;CL:0000790,2.35e-39,18;CL:0000625,5.19e-36,11;CL:0000838,2.68e-29,52;CL:0000542,1.28e-28,53;CL:0000051,1.28e-28,53;CL:0000084,3.44e-27,25;CL:0000827,3.44e-27,25;CL:0002087,5.48e-18,115;CL:0000738,3.82e-15,136;CL:0002031,4.19e-13,120;CL:0000037,8.90e-11,168;CL:0000226,4.62e-10,3;CL:0000842,4.62e-10,3;CL:0000988,7.62e-10,177;CL:0000623,1.03e-09,3;CL:0000825,1.03e-09,3;CL:0000624,4.17e-09,6;CL:0002032,7.47e-09,161;CL:0000837,7.47e-09,161 | ||
|ontology_enrichment_uberon=UBERON:0000178;1.56e-23;15!UBERON:0000179;1.56e-23;15!UBERON:0000463;1.56e-23;15!UBERON:0002390;3.47e-17;32!UBERON:0002193;1.18e-12;42!UBERON:0004177;9.84e-10;5!UBERON:0005057;9.84e-10;5!UBERON:0000160;2.41e-07;17!UBERON:0002370;3.44e-07;2!UBERON:0005058;3.44e-07;2!UBERON:0009113;3.44e-07;2 | |ontology_enrichment_development_v019=CL:0000790;2.33e-39;18!CL:0000051;7.26e-17;53 | ||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1909;4.02e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,3.78e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.38e-13!115;UBERON:0000178!3.12e-13!15;UBERON:0000179!3.12e-13!15;UBERON:0000463!3.12e-13!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.56e-23;15!UBERON:0000179;1.56e-23;15!UBERON:0000463;1.56e-23;15!UBERON:0002390;3.47e-17;32!UBERON:0002193;1.18e-12;42!UBERON:0004177;9.84e-10;5!UBERON:0005057;9.84e-10;5!UBERON:0000160;2.41e-07;17!UBERON:0002370;3.44e-07;2!UBERON:0005058;3.44e-07;2!UBERON:0009113;3.44e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.38e-23,15;UBERON:0000179,1.38e-23,15;UBERON:0000463,1.38e-23,15;UBERON:0004177,6.98e-11,7;UBERON:0005057,6.98e-11,7;UBERON:0002193,3.28e-08,108;UBERON:0002370,8.20e-08,4;UBERON:0005058,8.20e-08,4;UBERON:0009113,8.20e-08,4;UBERON:0003295,8.20e-08,4;UBERON:0005562,8.20e-08,4;UBERON:0005409,8.41e-08,25;UBERON:0002390,1.75e-07,98;UBERON:0003061,1.75e-07,98;UBERON:0000160,2.13e-07,17 | |||
|phase1_expression=0,0,0,0,0.446961094427288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53531759238885,0.309632246632152,0,0,0,0,0,0,1.10799081706375,0.601633342410425,1.51907609501096,0.447830948479849,2.59114932815184,0.257575567634187,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0.182664153764634,0,1.09227722252426,0.889509253863555,1.28019066769952,0.800791974072025,1.72425731986345,0.661044872784862,0,1.1384259382189,0.587237189370939,0.382273228125229,0,0,0,6.68813218387032,3.53709686474248,6.7848494669838,0,0.32592226663359,0,0,0,0.294605907474837,0.886135578334485,0,0,0,0.657751618414705,0.552700035571697,0.869409257205157,5.78317596332036,2.40786745280742,3.1360657141493,0,8.81407135284419,4.12352934579156,6.83153168452658,17.5210977878253,20.8346705234054,12.3558765778289,12.6483100025329,15.614366560839,9.99445812418767,14.206635122641,13.1380479507367,5.04016858061831,6.15112450302067,4.92402973201517,0,0,0,0,0,0,0,0,0,0,0,0.261958150995425,0,0,0,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368965315629341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.54655368363469,2.58753089831421,2.05348858047597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.72182447021197,1.72571360654893,5.87001567918944,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.515205058238611,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,0,0,5.58192370155386,3.0585488285695,4.5571774973933,4.2881719582402,5.75907182320672,5.18778648954174,8.64050299580984,2.37937552888281,0,0,0,0,1.15415370381156,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.31540698637377,0,0,0,0,0,0,0,0.493217028184668,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153900517007594,0,0,0,0.977826347298073,0,0,0,0,0,0,0,0,0,0,0,0,0,1.97894300007517,0,0,3.00755719311353,1.83309043480088,0,0,0,0,0,0,0,0,0,0,4.83962864194656,0,0.379119477770928,0,0,0,0,0,0,0,0,0,0,0,1.57254001417827,0,0,0,0,0.193978032976839,0,0,0,0,0,0.195551382734803,0,0.85381197895741,0,0,0,0,0,0,0,0,0,0,0,0,0.273810757783986,0,0,0,0,0,0,0,0,0.223171457441873,0.0671834724867263,0,0,0,0,0,0,3.64095327882873,0,0,0,0,0,0,0,0,0,0.394028536495991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0.640724475406168,0.157204305099666,0.414239055347196,8.43482237080316,0,0.121792598380896,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,1.66814029295813,5.42384133735438,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.389720617678777,0.132864840313363,0.163565394255844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788617450012534,0,0,0,0,0,0.159633859057151,0,0,0,0,0,0,0,0,0,0,0,0,0.225630985047772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235479278551542,0,0,0,0,0,0.214429632529969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.39892701215285,3.27839340755936,0,0,0,0,0.297046400327086,0,0,1.78569444161722,1.67590508731301,0,0,0,0,0.730336388246517,1.37618785021362,0,0,0.0679914901909147,0,3.7031878836078,0,0,0,0,0,0,0.101988829741982,1.06886962106224,0,0,0,0,0,0.103432995861895,0.426467963801962,0,2.45437857376823,4.15900585782248,0,0.0636471582781649,0.202117188958219,0.435433495793923,0,4.64729165800654,0.717222053926764,0,0,0,0,0,0,0,0,1.33151354837103,3.8242020782295,0 | |phase1_expression=0,0,0,0,0.446961094427288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53531759238885,0.309632246632152,0,0,0,0,0,0,1.10799081706375,0.601633342410425,1.51907609501096,0.447830948479849,2.59114932815184,0.257575567634187,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0.182664153764634,0,1.09227722252426,0.889509253863555,1.28019066769952,0.800791974072025,1.72425731986345,0.661044872784862,0,1.1384259382189,0.587237189370939,0.382273228125229,0,0,0,6.68813218387032,3.53709686474248,6.7848494669838,0,0.32592226663359,0,0,0,0.294605907474837,0.886135578334485,0,0,0,0.657751618414705,0.552700035571697,0.869409257205157,5.78317596332036,2.40786745280742,3.1360657141493,0,8.81407135284419,4.12352934579156,6.83153168452658,17.5210977878253,20.8346705234054,12.3558765778289,12.6483100025329,15.614366560839,9.99445812418767,14.206635122641,13.1380479507367,5.04016858061831,6.15112450302067,4.92402973201517,0,0,0,0,0,0,0,0,0,0,0,0.261958150995425,0,0,0,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368965315629341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.54655368363469,2.58753089831421,2.05348858047597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.72182447021197,1.72571360654893,5.87001567918944,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.515205058238611,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,0,0,5.58192370155386,3.0585488285695,4.5571774973933,4.2881719582402,5.75907182320672,5.18778648954174,8.64050299580984,2.37937552888281,0,0,0,0,1.15415370381156,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.31540698637377,0,0,0,0,0,0,0,0.493217028184668,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153900517007594,0,0,0,0.977826347298073,0,0,0,0,0,0,0,0,0,0,0,0,0,1.97894300007517,0,0,3.00755719311353,1.83309043480088,0,0,0,0,0,0,0,0,0,0,4.83962864194656,0,0.379119477770928,0,0,0,0,0,0,0,0,0,0,0,1.57254001417827,0,0,0,0,0.193978032976839,0,0,0,0,0,0.195551382734803,0,0.85381197895741,0,0,0,0,0,0,0,0,0,0,0,0,0.273810757783986,0,0,0,0,0,0,0,0,0.223171457441873,0.0671834724867263,0,0,0,0,0,0,3.64095327882873,0,0,0,0,0,0,0,0,0,0.394028536495991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0.640724475406168,0.157204305099666,0.414239055347196,8.43482237080316,0,0.121792598380896,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,1.66814029295813,5.42384133735438,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.389720617678777,0.132864840313363,0.163565394255844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788617450012534,0,0,0,0,0,0.159633859057151,0,0,0,0,0,0,0,0,0,0,0,0,0.225630985047772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235479278551542,0,0,0,0,0,0.214429632529969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.39892701215285,3.27839340755936,0,0,0,0,0.297046400327086,0,0,1.78569444161722,1.67590508731301,0,0,0,0,0.730336388246517,1.37618785021362,0,0,0.0679914901909147,0,3.7031878836078,0,0,0,0,0,0,0.101988829741982,1.06886962106224,0,0,0,0,0,0.103432995861895,0.426467963801962,0,2.45437857376823,4.15900585782248,0,0.0636471582781649,0.202117188958219,0.435433495793923,0,4.64729165800654,0.717222053926764,0,0,0,0,0,0,0,0,1.33151354837103,3.8242020782295,0 | ||
|short_description=p3@SCML4 | |short_description=p3@SCML4 | ||
}} | }} |
Latest revision as of 16:44, 19 September 2015
Short description: | p3@SCML4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SCML4_5end |
Coexpression cluster: | C98_CD8_Natural_Basophils_blood_CD4_Peripheral_Whole |
Association with transcript: | -45bp_to_ENST00000476798_5end |
EntrezGene: | SCML4 |
HGNC: | 21397 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 2.35e-39 | 18 |
alpha-beta T cell | 2.35e-39 | 18 |
immature T cell | 2.35e-39 | 18 |
mature T cell | 2.35e-39 | 18 |
immature alpha-beta T cell | 2.35e-39 | 18 |
CD8-positive, alpha-beta T cell | 5.19e-36 | 11 |
lymphoid lineage restricted progenitor cell | 2.68e-29 | 52 |
lymphocyte | 1.28e-28 | 53 |
common lymphoid progenitor | 1.28e-28 | 53 |
T cell | 3.44e-27 | 25 |
pro-T cell | 3.44e-27 | 25 |
nongranular leukocyte | 5.48e-18 | 115 |
leukocyte | 3.82e-15 | 136 |
hematopoietic lineage restricted progenitor cell | 4.19e-13 | 120 |
hematopoietic stem cell | 8.90e-11 | 168 |
single nucleate cell | 4.62e-10 | 3 |
mononuclear cell | 4.62e-10 | 3 |
hematopoietic cell | 7.62e-10 | 177 |
natural killer cell | 1.03e-09 | 3 |
pro-NK cell | 1.03e-09 | 3 |
CD4-positive, alpha-beta T cell | 4.17e-09 | 6 |
hematopoietic oligopotent progenitor cell | 7.47e-09 | 161 |
hematopoietic multipotent progenitor cell | 7.47e-09 | 161 |
Ontology term | p-value | n |
---|---|---|
blood | 1.38e-23 | 15 |
haemolymphatic fluid | 1.38e-23 | 15 |
organism substance | 1.38e-23 | 15 |
hemopoietic organ | 6.98e-11 | 7 |
immune organ | 6.98e-11 | 7 |
hemolymphoid system | 3.28e-08 | 108 |
thymus | 8.20e-08 | 4 |
hemolymphoid system gland | 8.20e-08 | 4 |
thymic region | 8.20e-08 | 4 |
pharyngeal gland | 8.20e-08 | 4 |
thymus primordium | 8.20e-08 | 4 |
gastrointestinal system | 8.41e-08 | 25 |
hematopoietic system | 1.75e-07 | 98 |
blood island | 1.75e-07 | 98 |
intestine | 2.13e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
melanoma | 3.78e-07 | 2 |