FFCP PHASE1:Hg19::chr3:115770049..115770065,-: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4045 | |EntrezGene=4045 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6705 | |HGNC=6705 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=33bp_to_ENST00000498645_5end | |||
|cluster_id=chr3:115770049..115770065,- | |||
|description=CAGE_peak_3_at_LSAMP_5end | |||
|id=chr3:115770049..115770065,- | |||
|ontology_enrichment_celltype=CL:0000945!4.14e-15!24;CL:0000826!4.14e-15!24 | |||
|ontology_enrichment_celltype_v019=CL:0000945;9.29e-27;24!CL:0000946;4.72e-15;1!CL:0000786;4.72e-15;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,9.48e-27,24;CL:0000826,9.48e-27,24;CL:0000946,4.73e-15,1;CL:0000786,4.73e-15,1;CL:0000980,4.73e-15,1;CL:0000838,4.37e-12,52;CL:0000542,7.56e-12,53;CL:0000051,7.56e-12,53;CL:0000785,3.56e-08,2;CL:0000955,3.56e-08,2;CL:0000818,3.56e-08,2;CL:0000954,3.56e-08,2;CL:0000816,3.56e-08,2 | |||
|ontology_enrichment_development_v019=UBERON:0006215;1.46e-39;3!UBERON:0001045;1.23e-14;1!CL:0000954;3.56e-08;2 | |||
|ontology_enrichment_disease=DOID:1287!2.77e-08!4;DOID:0060058!3.00e-08!10;DOID:114!1.05e-07!2 | |||
|ontology_enrichment_disease_v019=DOID:630;1.00e-14;1!DOID:0050177;1.00e-14;1!DOID:0050427;1.00e-14;1!DOID:2355;2.11e-14;1!DOID:1287;5.02e-14;4!DOID:0060058;1.09e-12;10!DOID:74;7.52e-08;2!DOID:114;7.52e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:630,1.07e-14,1;DOID:0050177,1.07e-14,1;DOID:0050427,1.07e-14,1;DOID:2355,1.41e-14,1;DOID:1287,4.70e-14,4;DOID:0060058,9.65e-13,10;DOID:74,6.15e-08,2;DOID:114,8.60e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0007023!2.88e-34!115;UBERON:0004733!7.58e-16!12;UBERON:0002028!7.58e-16!12;UBERON:0007277!7.58e-16!12;UBERON:0004732!1.61e-14!13;UBERON:0001049!4.38e-13!57;UBERON:0005068!4.38e-13!57;UBERON:0006241!4.38e-13!57;UBERON:0007135!4.38e-13!57;UBERON:0002616!1.67e-12!59;UBERON:0003076!2.12e-12!15;UBERON:0003057!2.12e-12!15;UBERON:0002680!2.83e-12!9;UBERON:0001895!2.83e-12!9;UBERON:0010092!2.83e-12!9;UBERON:0000955!3.03e-11!69;UBERON:0006238!3.03e-11!69;UBERON:0001017!3.28e-11!82;UBERON:0003075!9.94e-11!86;UBERON:0007284!9.94e-11!86;UBERON:0005743!1.79e-10!86;UBERON:0001950!1.90e-10!20;UBERON:0002346!4.88e-10!90;UBERON:0002619!2.14e-09!22;UBERON:0000988!2.64e-09!3;UBERON:0002298!2.74e-09!8;UBERON:0000073!4.79e-09!94;UBERON:0001016!4.79e-09!94;UBERON:0000200!9.38e-09!6;UBERON:0002020!2.10e-08!34;UBERON:0003528!2.10e-08!34;UBERON:0000956!4.00e-08!25;UBERON:0000203!4.00e-08!25;UBERON:0001870!1.42e-07!2;UBERON:0001869!1.61e-07!32;UBERON:0002360!2.23e-07!2;UBERON:0000094!2.23e-07!2;UBERON:0007645!2.23e-07!2;UBERON:0001893!5.53e-07!34;UBERON:0002148!8.36e-07!2;UBERON:0009662!8.36e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;3.60e-20;6!UBERON:0002146;8.17e-15;1!UBERON:0005623;8.17e-15;1!UBERON:0001154;1.23e-14;1!UBERON:0001153;1.23e-14;1!UBERON:0009854;1.23e-14;1!UBERON:0002680;1.14e-13;9!UBERON:0001895;1.14e-13;9!UBERON:0004733;2.11e-10;12!UBERON:0002028;2.11e-10;12!UBERON:0004732;1.20e-09;13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,3.37e-20,6;UBERON:0006215,3.37e-20,6;UBERON:0002146,8.17e-15,1;UBERON:0005623,8.17e-15,1;UBERON:0001154,1.23e-14,1;UBERON:0001153,1.23e-14,1;UBERON:0001045,1.23e-14,1;UBERON:0002680,1.09e-13,9;UBERON:0001895,1.09e-13,9;UBERON:0010092,1.09e-13,9;UBERON:0004733,2.04e-10,12;UBERON:0002028,2.04e-10,12;UBERON:0007277,2.04e-10,12;UBERON:0004732,1.17e-09,13;UBERON:0003076,1.92e-08,15;UBERON:0003057,1.92e-08,15 | |||
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| ||
|short_description=p3@LSAMP | |||
}} | }} |
Latest revision as of 18:15, 19 September 2015
Short description: | p3@LSAMP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LSAMP_5end |
Coexpression cluster: | NA |
Association with transcript: | 33bp_to_ENST00000498645_5end |
EntrezGene: | LSAMP |
HGNC: | 6705 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 9.48e-27 | 24 |
pro-B cell | 9.48e-27 | 24 |
antibody secreting cell | 4.73e-15 | 1 |
plasma cell | 4.73e-15 | 1 |
plasmablast | 4.73e-15 | 1 |
lymphoid lineage restricted progenitor cell | 4.37e-12 | 52 |
lymphocyte | 7.56e-12 | 53 |
common lymphoid progenitor | 7.56e-12 | 53 |
mature B cell | 3.56e-08 | 2 |
pre-B-II cell | 3.56e-08 | 2 |
transitional stage B cell | 3.56e-08 | 2 |
small pre-B-II cell | 3.56e-08 | 2 |
immature B cell | 3.56e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
cerebellum | 3.37e-20 | 6 |
rhombic lip | 3.37e-20 | 6 |
pulmonary valve | 8.17e-15 | 1 |
semi-lunar valve | 8.17e-15 | 1 |
vermiform appendix | 1.23e-14 | 1 |
caecum | 1.23e-14 | 1 |
midgut | 1.23e-14 | 1 |
regional part of metencephalon | 1.09e-13 | 9 |
metencephalon | 1.09e-13 | 9 |
future metencephalon | 1.09e-13 | 9 |
segmental subdivision of hindbrain | 2.04e-10 | 12 |
hindbrain | 2.04e-10 | 12 |
presumptive hindbrain | 2.04e-10 | 12 |
segmental subdivision of nervous system | 1.17e-09 | 13 |
posterior neural tube | 1.92e-08 | 15 |
chordal neural plate | 1.92e-08 | 15 |
Ontology term | p-value | n |
---|---|---|
genetic disease | 1.07e-14 | 1 |
monogenic disease | 1.07e-14 | 1 |
xeroderma pigmentosum | 1.07e-14 | 1 |
anemia | 1.41e-14 | 1 |
cardiovascular system disease | 4.70e-14 | 4 |
lymphoma | 9.65e-13 | 10 |
hematopoietic system disease | 6.15e-08 | 2 |
heart disease | 8.60e-08 | 2 |