FFCP PHASE1:Hg19::chr3:123550477..123550497,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr3:123550477..123550497,- to FFCP PHASE1:Hg19::chr3:123550477..123550497,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4638 | |EntrezGene=4638 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=7590 | |HGNC=7590 | ||
|TSSclassifier=strong | |||
|UniProt=Q06S79 | |UniProt=Q06S79 | ||
|association_with_transcript=-147bp_to_uc003egu.1_5end | |||
|cluster_id=chr3:123550477..123550497,- | |||
|description=CAGE_peak_23_at_MYLK_5end | |||
|id=chr3:123550477..123550497,- | |||
|ontology_enrichment_celltype=CL:1000507!1.96e-07!12;CL:1000494!1.96e-07!12;CL:0000499!7.97e-07!27 | |||
|ontology_enrichment_celltype_v019=CL:0000346;1.40e-18;3!CL:1000428;1.40e-18;3!CL:0002327;3.65e-15;4!CL:1000507;4.26e-15;10!CL:1000494;4.26e-15;10!CL:1000449;3.02e-14;15!CL:0000650;1.56e-13;2!CL:1000500;1.56e-13;2!CL:1000618;1.56e-13;2!CL:1001318;1.56e-13;2!CL:0002173;1.56e-13;2!CL:1000497;1.66e-12;17!CL:0002518;1.66e-12;17!CL:0002559;2.26e-11;5!CL:0000138;7.38e-10;6!CL:1000746;1.15e-08;7!CL:1000612;1.15e-08;7!CL:0002681;1.51e-08;12!CL:0002584;1.51e-08;12!CL:0002574;3.20e-07;1!CL:0000669;3.46e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000346,6.94e-19,3;CL:1000428,6.94e-19,3;CL:0002327,3.75e-15,4;CL:1000507,4.27e-15,10;CL:1000494,4.27e-15,10;CL:1000449,2.99e-14,15;CL:0000650,1.71e-13,2;CL:1000500,1.71e-13,2;CL:1000618,1.71e-13,2;CL:1001318,1.71e-13,2;CL:0002173,1.71e-13,2;CL:1000497,1.64e-12,17;CL:0002518,1.64e-12,17;CL:0002559,1.50e-11,5;CL:0000058,6.85e-10,6;CL:0000138,6.85e-10,6;CL:1000746,1.18e-08,7;CL:1000612,1.18e-08,7;CL:0002681,1.53e-08,12;CL:0002584,1.53e-08,12;CL:0002574,2.50e-07,1;CL:0000669,3.63e-07,4;CL:0000153,9.76e-07,9;CL:0000447,9.76e-07,9 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002619!1.39e-10!22;UBERON:0001950!2.76e-10!20;UBERON:0000200!1.98e-09!6;UBERON:0000956!6.86e-09!25;UBERON:0000203!6.86e-09!25;UBERON:0001893!1.16e-08!34;UBERON:0001869!1.75e-08!32;UBERON:0002791!8.67e-08!33;UBERON:0006555!1.26e-07!17;UBERON:0005103!1.26e-07!17;UBERON:0000083!1.26e-07!17;UBERON:0009201!1.26e-07!17;UBERON:0004819!1.26e-07!17;UBERON:0006553!1.26e-07!17;UBERON:0003074!1.26e-07!17;UBERON:0003060!1.26e-07!17;UBERON:0009773!1.96e-07!12;UBERON:0001231!1.96e-07!12;UBERON:0004810!1.96e-07!12;UBERON:0002780!2.23e-07!41;UBERON:0001890!2.23e-07!41;UBERON:0006240!2.23e-07!41;UBERON:0000064!3.64e-07!219;UBERON:0003080!4.30e-07!42;UBERON:0000080!4.62e-07!18;UBERON:0002120!4.62e-07!18;UBERON:0004875!4.62e-07!18;UBERON:0005721!4.62e-07!18;UBERON:0005754!4.62e-07!18;UBERON:0007297!4.62e-07!18;UBERON:0000475!4.62e-07!365;UBERON:0004121!9.75e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0000412;1.40e-18;3!UBERON:0001992;1.40e-18;3!UBERON:0001911;3.65e-15;4!UBERON:0004211;4.26e-15;10!UBERON:0009773;4.26e-15;10!UBERON:0001231;4.26e-15;10!UBERON:0004810;4.26e-15;10!UBERON:0006555;3.02e-14;15!UBERON:0004819;3.02e-14;15!UBERON:0001285;3.02e-14;15!UBERON:0007684;3.02e-14;15!UBERON:0003567;1.56e-13;2!UBERON:0003838;1.56e-13;2!UBERON:0003586;1.56e-13;2!UBERON:0005169;1.56e-13;2!UBERON:0002321;1.56e-13;2!UBERON:0005215;1.56e-13;2!UBERON:0002303;1.56e-13;2!UBERON:0002319;1.56e-13;2!UBERON:0001950;4.20e-13;20!UBERON:0002619;6.84e-12;22!UBERON:0002073;2.26e-11;5!UBERON:0000956;2.01e-10;25!UBERON:0000203;2.01e-10;25!UBERON:0001869;1.60e-09;32!UBERON:0001893;9.32e-09;34!UBERON:0002113;1.07e-08;24!UBERON:0011143;1.07e-08;24!UBERON:0000074;1.15e-08;7!UBERON:0001229;1.15e-08;7!UBERON:0001225;1.51e-08;12!UBERON:0008987;1.51e-08;12!UBERON:0002791;3.13e-07;32!UBERON:0002581;3.20e-07;1!UBERON:0002902;3.20e-07;1!UBERON:0002022;3.20e-07;1!UBERON:0009899;3.20e-07;1!UBERON:0007190;3.20e-07;1!UBERON:0003891;3.46e-07;4!UBERON:0000489;4.23e-07;29!UBERON:0001851;7.54e-07;15!UBERON:0000353;7.54e-07;15!UBERON:0006554;7.63e-07;30!UBERON:0001008;7.63e-07;30 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000412,6.94e-19,3;UBERON:0001992,6.94e-19,3;UBERON:0001911,3.75e-15,4;UBERON:0005333,3.75e-15,4;UBERON:0008425,3.75e-15,4;UBERON:0005311,3.75e-15,4;UBERON:0004810,4.27e-15,10;UBERON:0004211,2.99e-14,15;UBERON:0009773,2.99e-14,15;UBERON:0001231,2.99e-14,15;UBERON:0001285,2.99e-14,15;UBERON:0007684,2.99e-14,15;UBERON:0004208,2.99e-14,15;UBERON:0003567,1.71e-13,2;UBERON:0003838,1.71e-13,2;UBERON:0003586,1.71e-13,2;UBERON:0005169,1.71e-13,2;UBERON:0002321,1.71e-13,2;UBERON:0005215,1.71e-13,2;UBERON:0002303,1.71e-13,2;UBERON:0002319,1.71e-13,2;UBERON:0006555,2.51e-13,16;UBERON:0004819,2.51e-13,16;UBERON:0001950,5.10e-13,20;UBERON:0002619,8.15e-12,22;UBERON:0002073,1.50e-11,5;UBERON:0005086,1.50e-11,5;UBERON:0001869,2.29e-10,32;UBERON:0000956,2.34e-10,25;UBERON:0000203,2.34e-10,25;UBERON:0001893,1.04e-09,34;UBERON:0010532,1.18e-08,7;UBERON:0000074,1.18e-08,7;UBERON:0001229,1.18e-08,7;UBERON:0001230,1.18e-08,7;UBERON:0003220,1.18e-08,7;UBERON:0005749,1.18e-08,7;UBERON:0004199,1.18e-08,7;UBERON:0004209,1.18e-08,7;UBERON:0004198,1.18e-08,7;UBERON:0001225,1.53e-08,12;UBERON:0008987,1.53e-08,12;UBERON:0010371,1.69e-08,104;UBERON:0002113,5.49e-08,26;UBERON:0003918,5.49e-08,26;UBERON:0011143,5.49e-08,26;UBERON:0005095,5.49e-08,26;UBERON:0007687,5.49e-08,26;UBERON:0002791,5.54e-08,32;UBERON:0002780,6.63e-08,41;UBERON:0001890,6.63e-08,41;UBERON:0003080,6.63e-08,41;UBERON:0006240,6.63e-08,41;UBERON:0000076,8.38e-08,8;UBERON:0005103,1.26e-07,8;UBERON:0000083,1.26e-07,8;UBERON:0009201,1.26e-07,8;UBERON:0006553,1.26e-07,8;UBERON:0003074,1.26e-07,8;UBERON:0003060,1.26e-07,8;UBERON:0003528,1.77e-07,34;UBERON:0002020,1.77e-07,34;UBERON:0002581,2.21e-07,1;UBERON:0007190,2.66e-07,1;UBERON:0003891,3.63e-07,4;UBERON:0002902,3.84e-07,1;UBERON:0009899,3.84e-07,1;UBERON:0002022,4.34e-07,1;UBERON:0001851,7.60e-07,15;UBERON:0000353,7.60e-07,15;UBERON:0000080,8.00e-07,9;UBERON:0002120,8.00e-07,9;UBERON:0004875,8.00e-07,9;UBERON:0005721,8.00e-07,9;UBERON:0005754,8.00e-07,9;UBERON:0007297,8.00e-07,9;UBERON:0005085,9.76e-07,31 | |||
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| ||
|short_description=p23@MYLK | |||
}} | }} |
Latest revision as of 01:58, 20 September 2015
Short description: | p23@MYLK |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_23_at_MYLK_5end |
Coexpression cluster: | NA |
Association with transcript: | -147bp_to_uc003egu.1_5end |
EntrezGene: | MYLK |
HGNC: | 7590 |
UniProt: | Q06S79 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hair follicle dermal papilla cell | 6.94e-19 | 3 |
stem cell of epidermis | 6.94e-19 | 3 |
mammary gland epithelial cell | 3.75e-15 | 4 |
kidney tubule cell | 4.27e-15 | 10 |
nephron tubule epithelial cell | 4.27e-15 | 10 |
epithelial cell of nephron | 2.99e-14 | 15 |
mesangial cell | 1.71e-13 | 2 |
kidney interstitial cell | 1.71e-13 | 2 |
juxtaglomerular complex cell | 1.71e-13 | 2 |
renal interstitial pericyte | 1.71e-13 | 2 |
extraglomerular mesangial cell | 1.71e-13 | 2 |
kidney cell | 1.64e-12 | 17 |
kidney epithelial cell | 1.64e-12 | 17 |
hair follicle cell | 1.50e-11 | 5 |
chondroblast | 6.85e-10 | 6 |
chondrocyte | 6.85e-10 | 6 |
glomerular cell | 1.18e-08 | 7 |
kidney corpuscule cell | 1.18e-08 | 7 |
kidney cortical cell | 1.53e-08 | 12 |
renal cortical epithelial cell | 1.53e-08 | 12 |
stromal cell of pancreas | 2.50e-07 | 1 |
pericyte cell | 3.63e-07 | 4 |
GAG secreting cell | 9.76e-07 | 9 |
carbohydrate secreting cell | 9.76e-07 | 9 |