FFCP PHASE1:Hg19::chr2:216245562..216245577,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:216245562..216245577,- to FFCP PHASE1:Hg19::chr2:216245562..216245577,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2335 | |EntrezGene=2335 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3778 | |HGNC=3778 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=474bp_to_ENST00000474036_5end | |||
|cluster_id=chr2:216245562..216245577,- | |||
|coexpression_cluster_id=C79 | |||
|description=CAGE_peak_58_at_FN1_5end | |||
|id=chr2:216245562..216245577,- | |||
|ontology_enrichment_celltype=CL:0000055!3.29e-29!180;CL:0000057!4.66e-22!75;CL:0002371!3.58e-14!591;CL:0000144!2.18e-12!625;CL:0000680!4.65e-12!57;CL:0000056!4.65e-12!57;CL:0000355!4.65e-12!57;CL:0000183!1.24e-11!59;CL:0000187!7.62e-11!54;CL:0002620!3.59e-10!23;CL:0000048!2.26e-09!430;CL:0000723!7.11e-09!436;CL:0000034!1.55e-08!444;CL:0000393!1.99e-08!60;CL:0000211!1.99e-08!60;CL:0000548!2.22e-08!679;CL:0000004!2.22e-08!679;CL:0000255!2.22e-08!679;CL:0000012!5.19e-08!682;CL:0000222!5.36e-07!119;CL:0002334!5.81e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0000723;6.57e-11;61!CL:0002620;1.54e-10;23!CL:0000134;2.52e-10;55!CL:0000048;4.68e-09;58!CL:0000057;4.99e-09;73!CL:0002548;5.50e-08;6!CL:0002570;6.45e-08;8!CL:0002320;1.07e-07;188!CL:0000034;1.12e-07;69!CL:0002494;2.69e-07;16 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.70e-20,76;CL:0000048,1.36e-10,427;CL:0002620,2.23e-10,23;CL:0000723,4.28e-10,433;CL:0000034,1.86e-09,441;CL:0002320,1.34e-08,361;CL:0002570,3.72e-08,8;CL:0002548,1.19e-07,6;CL:0002494,5.34e-07,16;CL:0000134,5.91e-07,354 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;1.71e-07;5!DOID:450;1.71e-07;5!DOID:66;1.71e-07;5!DOID:423;1.71e-07;5!DOID:0080000;1.71e-07;5!DOID:11722;1.71e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,1.71e-07,5;DOID:450,1.71e-07,5;DOID:66,1.71e-07,5;DOID:423,1.71e-07,5;DOID:0080000,1.71e-07,5;DOID:11722,1.71e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0000914!1.43e-15!83;UBERON:0002329!1.43e-15!83;UBERON:0003077!1.43e-15!83;UBERON:0003059!1.43e-15!83;UBERON:0007282!1.43e-15!83;UBERON:0009618!1.43e-15!83;UBERON:0007285!1.43e-15!83;UBERON:0004290!8.28e-14!70;UBERON:0005256!8.81e-14!143;UBERON:0000486!7.32e-12!82;UBERON:0001134!4.98e-11!61;UBERON:0002036!4.98e-11!61;UBERON:0003082!4.98e-11!61;UBERON:0002385!5.72e-11!63;UBERON:0001015!5.72e-11!63;UBERON:0000383!5.72e-11!63;UBERON:0002100!3.34e-09!216;UBERON:0002199!5.44e-09!45;UBERON:0002416!5.44e-09!45;UBERON:0004872!7.90e-09!84;UBERON:0000490!3.76e-08!138;UBERON:0002097!4.99e-08!40;UBERON:0003914!1.04e-07!118;UBERON:0003102!6.59e-07!95;UBERON:0005631!9.96e-07!14;UBERON:0000158!9.96e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0001013;9.09e-07;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,2.36e-09,371;UBERON:0007503,1.01e-07,78;UBERON:0002199,2.06e-07,46;UBERON:0002416,2.06e-07,46;UBERON:0002329,5.04e-07,71;UBERON:0003059,5.04e-07,71;UBERON:0007282,5.04e-07,71;UBERON:0004290,5.04e-07,71;UBERON:0009618,5.04e-07,71;UBERON:0002097,5.44e-07,41;UBERON:0001013,5.87e-07,14;UBERON:0003077,7.75e-07,72;UBERON:0007285,7.75e-07,72 | |||
|phase1_expression=0.726713517082227,1.71280419112787,0.845726424575827,1.0007329835313,0.893922188854576,4.36169262050184,0,0.631719873426831,0.522371256399677,0,0.697801167972428,1.96597234917155,1.58260186937072,0.37129905888014,3.97676850873499,0,1.20538905604795,0.730310090387373,1.95173119516203,0.246242116153576,0.612002073732759,0,0,0.136874425072884,0.753255837568817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,34.1329612839546,3.35350429851818,0.767175371061182,0.722878304769133,0.50133791063589,0.724232594804119,7.95285947051099,3.89307896242109,0,0.665188192387692,0.351339142772504,0,0,0,0,0,0,0,0,0,0.198762407366705,1.72046919021225,0.347140501607594,0.56530794192401,0,0.550236083880135,0.208994966536811,0,0.35576626268671,0.33472061276467,0,0,0,0.367663080345869,0.81014194788176,0,0,0.112611480483322,0,0,0.549605231791222,0,0,0,4.96971951695318,1.39293562831038,5.03154887090231,9.75244510545967,0.709336764396714,1.12135520028461,2.1349799145941,3.20667812942308,1.24484414159907,1.21239604862719,1.47115712802113,3.93529311876822,16.70910180992,0,1.5608003841516,1.1409436430889,1.64393548606981,1.05691048779388,0.485618833104395,0.280901613404497,0,0.122834317311768,0.206651562351531,0,1.48360157567134,0.910161361938026,0,0.168336113954066,0.875829639103749,0.277064115484183,1.75591048352335,2.14541457059314,0.751190294532984,1.47461838108027,5.56107870635472,1.49490172172997,2.54318281391474,2.10063767259082,1.44273540933814,2.83404594050192,0.930584281657949,2.36286865137773,1.46155507741798,4.03894038790583,0.828449087780694,1.13152239773168,3.19508633264953,0.403008392910561,0.67824236924195,0.386521706326594,0.272746120590835,0,0,0,0.116193942869518,0.10366105501537,0.252320850875628,0,3.12899064659632,3.21620469096443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.057870056657,2.94017422771084,0,0,0,0,0.245976877086227,0.343135620597051,0.439001141634502,0,0,0,0.651616610620649,0,0,0,3.63966952131047,0.288732895522148,0,0,0,0,0,0,0,0,0.335964256397719,0,1.07470227243418,0.581267877027924,0.766765358330422,0,0,0,0,0,0,0.381988425558278,0,0,0.102827492703324,0,0,0.448524337381443,1.30788020649984,0.22001485746285,0.129271715757778,3.57656445851882,1.690605505112,0.797814349754612,0,0.257207374262142,1.41849132023278,1.0656887160644,0.142977993658148,0,0,1.62868092146868,0.355391948742546,0.791951872933429,0.602878754119172,0,0,0,0,2.10833939483032,1.19812427745791,2.29723871668228,0,1.15825045334063,1.84928690295345,0.716243852959582,0,0,0,0,0,0,0,0,0,0,0,0,1.10422342547226,3.50119364741774,2.17012018959788,2.9115920614313,2.85486382075459,1.26161932027148,2.22568688486155,1.20378439891088,0,2.0694614258501,1.99267679560631,2.02806085395873,0.521301686808497,0.587403472388222,1.71571711905428,0,0,0,0,3.32870879020994,2.72151263996712,2.72918588600655,1.84154367945675,3.36792113319688,0.640695746278505,0.511707249066704,1.60853921143608,1.48418066444991,1.54209693802656,1.77561725313127,0.821271560138091,0.519254429183621,0.581051892299796,0.362578348774867,2.6065841139427,0,0.34444334449382,0.364182336013434,0.786746489756545,0,0.15403067420883,0,0,0.211103257785751,1.13733384070897,0,2.59099099322567,0,0.270946437543853,1.00337954770971,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0.574265537996172,0.650060246036521,3.21367859688319,0.580024309752732,2.00263202249038,1.5350367472613,0.689182862422653,2.25582514223375,3.62541734785571,1.19317278382541,0.534192213880424,1.32227932288782,2.11409074101617,1.27612712494584,1.92199783625545,0,10.0739950985805,0,0.308033580176089,0,0.869932992075073,1.29726953372744,0.286249773483982,0.372158369359667,1.58189712359363,1.5250415513906,0.511795582622668,4.2793898803392,0.318203247925937,0.78494864019923,0.359744915166629,0.823611089208164,0.589062011728432,0,0,0,0,0.243713489631284,0,0.136499911407986,0.282810863907425,1.13008116620243,0,0.66343897524122,0.438450885253763,1.15755106853338,1.9676842561399,0.608731130888112,0.92947049429925,0.281695602532241,1.00387946542836,0.982490410131212,1.78335525740625,0.709522128141196,0.211107635297664,0.658589785919804,0,0.349934720244983,0.0962221127255121,0,0,0.188287601553558,0,0,0,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,4.29740072527842,0.593929361665277,0.921482106297696,0,0,3.00533503561846,0,0,0,0,0,0,0,12.7526230941341,0,0,0,0.690503839458535,0,0,0,0,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,19.4590707436471,2.28993983504656,90.6159119231679,0,0,0,0,0,0,0,0,0,0,0.565412285735763,0,0,0.0884575645033392,0,0,0,0,0,0.802577647298789,0,0,0,0,3.94584402849391,0,0,0.189559738885464,0,0,0.664653872707185,0,0.313932918407225,0,0.284609546029793,0,0,0,0.0870592065804026,0.698906672968121,0,0,0,0,0.387956065953678,0,0,0.137041924646751,0,0,0,0,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| ||
|short_description=p58@FN1 | |||
}} | }} |
Latest revision as of 02:21, 20 September 2015
Short description: | p58@FN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_58_at_FN1_5end |
Coexpression cluster: | C79_chorionic_Chondrocyte_Cardiac_Smooth_Fibroblast_Preadipocyte_Mesenchymal |
Association with transcript: | 474bp_to_ENST00000474036_5end |
EntrezGene: | FN1 |
HGNC: | 3778 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.70e-20 | 76 |
multi fate stem cell | 1.36e-10 | 427 |
skin fibroblast | 2.23e-10 | 23 |
somatic stem cell | 4.28e-10 | 433 |
stem cell | 1.86e-09 | 441 |
connective tissue cell | 1.34e-08 | 361 |
mesenchymal stem cell of adipose | 3.72e-08 | 8 |
cardiac fibroblast | 1.19e-07 | 6 |
cardiocyte | 5.34e-07 | 16 |
mesenchymal cell | 5.91e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 2.36e-09 | 371 |
epithelial vesicle | 1.01e-07 | 78 |
integument | 2.06e-07 | 46 |
integumental system | 2.06e-07 | 46 |
somite | 5.04e-07 | 71 |
presomitic mesoderm | 5.04e-07 | 71 |
presumptive segmental plate | 5.04e-07 | 71 |
dermomyotome | 5.04e-07 | 71 |
trunk paraxial mesoderm | 5.04e-07 | 71 |
skin of body | 5.44e-07 | 41 |
adipose tissue | 5.87e-07 | 14 |
paraxial mesoderm | 7.75e-07 | 72 |
presumptive paraxial mesoderm | 7.75e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 1.71e-07 | 5 |
myotonic disease | 1.71e-07 | 5 |
muscle tissue disease | 1.71e-07 | 5 |
myopathy | 1.71e-07 | 5 |
muscular disease | 1.71e-07 | 5 |
myotonic dystrophy | 1.71e-07 | 5 |