FFCP PHASE1:Hg19::chr12:6898674..6898739,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=920 | |EntrezGene=920 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1678 | |HGNC=1678 | ||
|TSSclassifier=strong | |||
|UniProt=F5GYA9,F5H480 | |UniProt=F5GYA9,F5H480 | ||
|association_with_transcript=0bp_to_ENST00000437800,ENST00000535466,ENST00000536590,ENST00000536610,ENST00000538827,ENST00000539492,ENST00000541982,ENST00000544344_5end | |association_with_transcript=0bp_to_ENST00000437800,ENST00000535466,ENST00000536590,ENST00000536610,ENST00000538827,ENST00000539492,ENST00000541982,ENST00000544344_5end | ||
|cluster_id=chr12:6898674..6898739,+ | |||
|coexpression_cluster_id=C2234 | |coexpression_cluster_id=C2234 | ||
|description=CAGE_peak_1_at_CD4_5end | |description=CAGE_peak_1_at_CD4_5end | ||
|id=chr12:6898674..6898739,+ | |id=chr12:6898674..6898739,+ | ||
|ontology_enrichment_celltype=CL:0000988!8.64e-43!182;CL:0000037!1.52e-42!172;CL:0000566!1.52e-42!172;CL:0000763!3.65e-40!112;CL:0000049!3.65e-40!112;CL:0002032!6.49e-39!165;CL:0000837!6.49e-39!165;CL:0000738!7.03e-39!140;CL:0000766!6.36e-37!76;CL:0000557!5.35e-35!71;CL:0000839!3.35e-33!70;CL:0002009!6.25e-33!65;CL:0002194!1.13e-31!63;CL:0000576!1.13e-31!63;CL:0000040!1.13e-31!63;CL:0000559!1.13e-31!63;CL:0002031!5.17e-31!124;CL:0002087!2.45e-29!119;CL:0002057!7.91e-27!42;CL:0000860!4.46e-23!45;CL:0000134!7.47e-09!358;CL:0002320!1.78e-08!365;CL:0000451!3.13e-07!10;CL:0002393!4.84e-07!9;CL:0002397!4.84e-07!9;CL:0000084!7.79e-07!25;CL:0000827!7.79e-07!25;CL:0000219!9.12e-07!390 | |ontology_enrichment_celltype=CL:0000988!8.64e-43!182;CL:0000037!1.52e-42!172;CL:0000566!1.52e-42!172;CL:0000763!3.65e-40!112;CL:0000049!3.65e-40!112;CL:0002032!6.49e-39!165;CL:0000837!6.49e-39!165;CL:0000738!7.03e-39!140;CL:0000766!6.36e-37!76;CL:0000557!5.35e-35!71;CL:0000839!3.35e-33!70;CL:0002009!6.25e-33!65;CL:0002194!1.13e-31!63;CL:0000576!1.13e-31!63;CL:0000040!1.13e-31!63;CL:0000559!1.13e-31!63;CL:0002031!5.17e-31!124;CL:0002087!2.45e-29!119;CL:0002057!7.91e-27!42;CL:0000860!4.46e-23!45;CL:0000134!7.47e-09!358;CL:0002320!1.78e-08!365;CL:0000451!3.13e-07!10;CL:0002393!4.84e-07!9;CL:0002397!4.84e-07!9;CL:0000084!7.79e-07!25;CL:0000827!7.79e-07!25;CL:0000219!9.12e-07!390 | ||
|ontology_enrichment_celltype_v019=CL:0000473;8.73e-22;39!CL:0000234;8.73e-22;39!CL:0000576;1.95e-21;48!CL:0000860;2.13e-21;33!CL:0002057;2.13e-21;33!CL:0000766;5.13e-19;69!CL:0000763;3.65e-14;100!CL:0000738;6.26e-10;136!CL:0002087;1.14e-09;104!CL:0000988;5.57e-09;177!CL:0000451;6.83e-08;10!CL:0000084;3.22e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,4.89e-50,177;CL:0000037,3.07e-49,168;CL:0000763,1.90e-48,108;CL:0000049,1.90e-48,108;CL:0000766,2.80e-45,72;CL:0002032,4.02e-45,161;CL:0000837,4.02e-45,161;CL:0000738,5.93e-45,136;CL:0000557,3.47e-43,67;CL:0002009,5.54e-41,61;CL:0000839,1.51e-40,66;CL:0002194,1.47e-39,59;CL:0000576,1.47e-39,59;CL:0000040,1.47e-39,59;CL:0000559,1.47e-39,59;CL:0002031,3.47e-36,120;CL:0000473,1.89e-34,48;CL:0000234,1.89e-34,48;CL:0002087,3.78e-34,115;CL:0000860,8.91e-30,42;CL:0002057,8.91e-30,42;CL:0000134,3.44e-09,354;CL:0002320,9.45e-09,361;CL:0000451,6.83e-08,10;CL:0002393,1.11e-07,9;CL:0002397,1.11e-07,9;CL:0000084,3.86e-07,25;CL:0000827,3.86e-07,25 | |||
|ontology_enrichment_development_v019=CL:0002057;1.50e-21;42!CL:0000049;2.39e-13;108 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.50e-40!102;UBERON:0003061!3.50e-40!102;UBERON:0002193!4.71e-36!112;UBERON:0002371!8.19e-32!80;UBERON:0002405!2.05e-27!115;UBERON:0001474!1.76e-26!86;UBERON:0007023!3.57e-22!115;UBERON:0004765!1.42e-20!101;UBERON:0001434!1.42e-20!101;UBERON:0003081!5.32e-10!216;UBERON:0000178!4.71e-08!15;UBERON:0000179!4.71e-08!15;UBERON:0000463!4.71e-08!15;UBERON:0002204!1.63e-07!167;UBERON:0002384!1.99e-07!375;UBERON:0001049!2.49e-07!57;UBERON:0005068!2.49e-07!57;UBERON:0006241!2.49e-07!57;UBERON:0007135!2.49e-07!57 | |ontology_enrichment_uberon=UBERON:0002390!3.50e-40!102;UBERON:0003061!3.50e-40!102;UBERON:0002193!4.71e-36!112;UBERON:0002371!8.19e-32!80;UBERON:0002405!2.05e-27!115;UBERON:0001474!1.76e-26!86;UBERON:0007023!3.57e-22!115;UBERON:0004765!1.42e-20!101;UBERON:0001434!1.42e-20!101;UBERON:0003081!5.32e-10!216;UBERON:0000178!4.71e-08!15;UBERON:0000179!4.71e-08!15;UBERON:0000463!4.71e-08!15;UBERON:0002204!1.63e-07!167;UBERON:0002384!1.99e-07!375;UBERON:0001049!2.49e-07!57;UBERON:0005068!2.49e-07!57;UBERON:0006241!2.49e-07!57;UBERON:0007135!2.49e-07!57 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;8.30e-09;15!UBERON:0000179;8.30e-09;15!UBERON:0000463;8.30e-09;15 | |||
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|short_description=p1@CD4 | |short_description=p1@CD4 | ||
}} | }} |
Latest revision as of 03:26, 20 September 2015
Short description: | p1@CD4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CD4_5end |
Coexpression cluster: | C2234_Monocytederived_Dendritic_CD14_Macrophage_CD4_CD14CD16_acute |
Association with transcript: | 0bp_to_ENST00000437800, ENST00000535466, ENST00000536590, ENST00000536610, ENST00000538827, ENST00000539492, ENST00000541982, ENST00000544344_5end |
EntrezGene: | CD4 |
HGNC: | 1678 |
UniProt: | F5GYA9F5H480 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 4.89e-50 | 177 |
hematopoietic stem cell | 3.07e-49 | 168 |
myeloid cell | 1.90e-48 | 108 |
common myeloid progenitor | 1.90e-48 | 108 |
myeloid leukocyte | 2.80e-45 | 72 |
hematopoietic oligopotent progenitor cell | 4.02e-45 | 161 |
hematopoietic multipotent progenitor cell | 4.02e-45 | 161 |
leukocyte | 5.93e-45 | 136 |
granulocyte monocyte progenitor cell | 3.47e-43 | 67 |
macrophage dendritic cell progenitor | 5.54e-41 | 61 |
myeloid lineage restricted progenitor cell | 1.51e-40 | 66 |
monopoietic cell | 1.47e-39 | 59 |
monocyte | 1.47e-39 | 59 |
monoblast | 1.47e-39 | 59 |
promonocyte | 1.47e-39 | 59 |
hematopoietic lineage restricted progenitor cell | 3.47e-36 | 120 |
defensive cell | 1.89e-34 | 48 |
phagocyte | 1.89e-34 | 48 |
nongranular leukocyte | 3.78e-34 | 115 |
classical monocyte | 8.91e-30 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.91e-30 | 42 |
mesenchymal cell | 3.44e-09 | 354 |
connective tissue cell | 9.45e-09 | 361 |
dendritic cell | 6.83e-08 | 10 |
intermediate monocyte | 1.11e-07 | 9 |
CD14-positive, CD16-positive monocyte | 1.11e-07 | 9 |
T cell | 3.86e-07 | 25 |
pro-T cell | 3.86e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 3.68e-47 | 98 |
blood island | 3.68e-47 | 98 |
hemolymphoid system | 3.67e-43 | 108 |
bone marrow | 1.70e-37 | 76 |
immune system | 6.31e-35 | 93 |
bone element | 4.69e-32 | 82 |
skeletal element | 1.15e-26 | 90 |
adult organism | 2.88e-24 | 114 |
skeletal system | 2.13e-23 | 100 |
lateral plate mesoderm | 4.74e-14 | 203 |
blood | 8.25e-09 | 15 |
haemolymphatic fluid | 8.25e-09 | 15 |
organism substance | 8.25e-09 | 15 |
musculoskeletal system | 1.08e-07 | 167 |
connective tissue | 1.24e-07 | 371 |
neural tube | 7.44e-07 | 56 |
neural rod | 7.44e-07 | 56 |
future spinal cord | 7.44e-07 | 56 |
neural keel | 7.44e-07 | 56 |