FFCP PHASE1:Hg19::chr14:51562005..51562012,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=114088 | |EntrezGene=114088 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16288 | |HGNC=16288 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=34bp_to_ENST00000338969_5end | |association_with_transcript=34bp_to_ENST00000338969_5end | ||
|cluster_id=chr14:51562005..51562012,- | |||
|coexpression_cluster_id=C3391 | |||
|description=CAGE_peak_5_at_TRIM9_5end | |description=CAGE_peak_5_at_TRIM9_5end | ||
|id=chr14:51562005..51562012,- | |id=chr14:51562005..51562012,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000047;3.96e-66;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,1.71e-17,8 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0001882;5.05e-34;1!UBERON:0005403;5.05e-34;1!UBERON:0000349;2.08e-27;5!UBERON:0001876;5.48e-18;2!UBERON:0001905;9.07e-18;2!UBERON:0002757;9.07e-18;2!UBERON:0010134;9.07e-18;2!UBERON:0005408;9.07e-18;2!UBERON:0001899;9.07e-18;2!UBERON:0002420;9.73e-16;9!UBERON:0007245;9.73e-16;9!UBERON:0010009;9.73e-16;9!UBERON:0010011;9.73e-16;9!UBERON:0000454;9.73e-16;9!UBERON:0000369;1.44e-09;4!UBERON:0002435;1.44e-09;4!UBERON:0003296;1.44e-09;4!UBERON:0010133;1.44e-09;4!UBERON:0002784;1.44e-09;4!UBERON:0000204;1.44e-09;4!UBERON:0001017;8.92e-09;75!UBERON:0001016;6.52e-08;83!UBERON:0000955;8.10e-08;68!UBERON:0002780;6.10e-07;41!UBERON:0001890;6.10e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001882,7.06e-34,1;UBERON:0005403,7.06e-34,1;UBERON:0000349,2.38e-27,5;UBERON:0001876,5.48e-18,2;UBERON:0001905,1.27e-17,2;UBERON:0002757,1.27e-17,2;UBERON:0010134,1.27e-17,2;UBERON:0005408,1.27e-17,2;UBERON:0001899,1.27e-17,2;UBERON:0002420,1.05e-15,9;UBERON:0007245,1.05e-15,9;UBERON:0010009,1.05e-15,9;UBERON:0010011,1.05e-15,9;UBERON:0000454,1.05e-15,9;UBERON:0001017,9.81e-15,81;UBERON:0001016,2.44e-13,89;UBERON:0000369,1.57e-09,4;UBERON:0002435,1.57e-09,4;UBERON:0000204,1.57e-09,4;UBERON:0010082,1.57e-09,4;UBERON:0003296,1.70e-09,4;UBERON:0010133,1.70e-09,4;UBERON:0002784,1.70e-09,4;UBERON:0000955,4.15e-08,68;UBERON:0006238,4.15e-08,68;UBERON:0002780,8.32e-08,41;UBERON:0001890,8.32e-08,41;UBERON:0003080,8.32e-08,41;UBERON:0006240,8.32e-08,41;UBERON:0004121,3.21e-07,171;UBERON:0000924,3.21e-07,171;UBERON:0006601,3.21e-07,171 | |||
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| ||
|short_description=p5@TRIM9 | |short_description=p5@TRIM9 | ||
}} | }} |
Latest revision as of 04:30, 20 September 2015
Short description: | p5@TRIM9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_TRIM9_5end |
Coexpression cluster: | C3391_amygdala_brain_parietal_occipital_insula_putamen_middle |
Association with transcript: | 34bp_to_ENST00000338969_5end |
EntrezGene: | TRIM9 |
HGNC: | 16288 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 1.71e-17 | 8 |
Ontology term | p-value | n |
---|---|---|
nucleus accumbens | 7.06e-34 | 1 |
ventral striatum | 7.06e-34 | 1 |
limbic system | 2.38e-27 | 5 |
amygdala | 5.48e-18 | 2 |
pineal body | 1.27e-17 | 2 |
regional part of epithalamus | 1.27e-17 | 2 |
secretory circumventricular organ | 1.27e-17 | 2 |
circumventricular organ | 1.27e-17 | 2 |
epithalamus | 1.27e-17 | 2 |
basal ganglion | 1.05e-15 | 9 |
nuclear complex of neuraxis | 1.05e-15 | 9 |
aggregate regional part of brain | 1.05e-15 | 9 |
collection of basal ganglia | 1.05e-15 | 9 |
cerebral subcortex | 1.05e-15 | 9 |
central nervous system | 9.81e-15 | 81 |
nervous system | 2.44e-13 | 89 |
corpus striatum | 1.57e-09 | 4 |
striatum | 1.57e-09 | 4 |
ventral part of telencephalon | 1.57e-09 | 4 |
future corpus striatum | 1.57e-09 | 4 |
gland of diencephalon | 1.70e-09 | 4 |
neuroendocrine gland | 1.70e-09 | 4 |
regional part of diencephalon | 1.70e-09 | 4 |
brain | 4.15e-08 | 68 |
future brain | 4.15e-08 | 68 |
regional part of forebrain | 8.32e-08 | 41 |
forebrain | 8.32e-08 | 41 |
anterior neural tube | 8.32e-08 | 41 |
future forebrain | 8.32e-08 | 41 |
ectoderm-derived structure | 3.21e-07 | 171 |
ectoderm | 3.21e-07 | 171 |
presumptive ectoderm | 3.21e-07 | 171 |