Personal tools

FFCP PHASE1:Hg19::chr5:132149081..132149086,+: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(5 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{FFCP
{{FFCP
|DHSsupport=supported 
|DPIdataset=robust
|EntrezGene=134548
|EntrezGene=134548
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding
|HGNC=27033
|HGNC=27033
|TSSclassifier=strong
|UniProt=Q2M3V2
|UniProt=Q2M3V2
|association_with_transcript=48bp_to_ENST00000378693,NM_175873,uc003kxw.2_5end
|association_with_transcript=48bp_to_ENST00000378693,NM_175873,uc003kxw.2_5end
|cluster_id=chr5:132149081..132149086,+
|coexpression_cluster_id=C35
|coexpression_cluster_id=C35
|description=CAGE_peak_8_at_SOWAHA_5end
|description=CAGE_peak_8_at_SOWAHA_5end
Line 9: Line 14:
|ontology_enrichment_celltype=
|ontology_enrichment_celltype=
|ontology_enrichment_celltype_v019=
|ontology_enrichment_celltype_v019=
|ontology_enrichment_celltype_v019_2=
|ontology_enrichment_development_v019=UBERON:0010122;5.04e-34;2
|ontology_enrichment_development_v019=UBERON:0010122;5.04e-34;2
|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_disease_v019=
|ontology_enrichment_disease_v019=
|ontology_enrichment_disease_v019_2=
|ontology_enrichment_uberon=UBERON:0002780!1.57e-73!41;UBERON:0001890!1.57e-73!41;UBERON:0006240!1.57e-73!41;UBERON:0001893!4.90e-73!34;UBERON:0003080!1.00e-71!42;UBERON:0001869!4.23e-70!32;UBERON:0002791!7.00e-68!33;UBERON:0002020!7.73e-66!34;UBERON:0003528!7.73e-66!34;UBERON:0002619!1.46e-54!22;UBERON:0003056!4.45e-53!61;UBERON:0001049!4.09e-52!57;UBERON:0005068!4.09e-52!57;UBERON:0006241!4.09e-52!57;UBERON:0007135!4.09e-52!57;UBERON:0001950!1.70e-51!20;UBERON:0002616!3.07e-50!59;UBERON:0000956!5.84e-48!25;UBERON:0000203!5.84e-48!25;UBERON:0000955!5.56e-46!69;UBERON:0006238!5.56e-46!69;UBERON:0001017!3.36e-38!82;UBERON:0003075!1.35e-36!86;UBERON:0007284!1.35e-36!86;UBERON:0005743!2.88e-36!86;UBERON:0007023!5.86e-35!115;UBERON:0002346!8.52e-35!90;UBERON:0000073!1.68e-32!94;UBERON:0001016!1.68e-32!94;UBERON:0000153!5.19e-30!129;UBERON:0007811!5.19e-30!129;UBERON:0000033!4.41e-29!123;UBERON:0002420!4.63e-27!9;UBERON:0007245!4.63e-27!9;UBERON:0010009!4.63e-27!9;UBERON:0010011!4.63e-27!9;UBERON:0000454!4.63e-27!9;UBERON:0009663!2.45e-24!7;UBERON:0001872!4.95e-22!5;UBERON:0002308!6.68e-19!9;UBERON:0000125!6.68e-19!9;UBERON:0004121!4.40e-18!169;UBERON:0000200!6.18e-18!6;UBERON:0000924!1.44e-17!173;UBERON:0006601!1.44e-17!173;UBERON:0000369!1.72e-16!4;UBERON:0002435!1.72e-16!4;UBERON:0000204!1.72e-16!4;UBERON:0010082!1.72e-16!4;UBERON:0001871!7.32e-14!7;UBERON:0000349!3.56e-13!5;UBERON:0000025!1.65e-12!194;UBERON:0002021!1.71e-12!5;UBERON:0000477!4.19e-11!286;UBERON:0000064!1.71e-10!219;UBERON:0005383!1.75e-10!3;UBERON:0005382!1.75e-10!3;UBERON:0004111!2.26e-10!241;UBERON:0002771!8.21e-10!3;UBERON:0001874!1.65e-08!1;UBERON:0001882!2.90e-08!1;UBERON:0005403!2.90e-08!1;UBERON:0001000!3.34e-08!1;UBERON:0005352!3.34e-08!1;UBERON:0002902!3.83e-08!1;UBERON:0009899!3.83e-08!1;UBERON:0002581!4.11e-08!1;UBERON:0000483!6.04e-08!309;UBERON:0007190!7.10e-08!1;UBERON:0003112!7.59e-08!1;UBERON:0000032!7.59e-08!1;UBERON:0005253!7.59e-08!1;UBERON:0003128!7.59e-08!1;UBERON:0002241!7.59e-08!1;UBERON:0001703!7.59e-08!1;UBERON:0004761!7.59e-08!1;UBERON:0009617!7.59e-08!1;UBERON:0000119!7.97e-08!312;UBERON:0002038!8.69e-08!1;UBERON:0009661!8.69e-08!1;UBERON:0002022!1.14e-07!1;UBERON:0000475!1.32e-07!365
|ontology_enrichment_uberon=UBERON:0002780!1.57e-73!41;UBERON:0001890!1.57e-73!41;UBERON:0006240!1.57e-73!41;UBERON:0001893!4.90e-73!34;UBERON:0003080!1.00e-71!42;UBERON:0001869!4.23e-70!32;UBERON:0002791!7.00e-68!33;UBERON:0002020!7.73e-66!34;UBERON:0003528!7.73e-66!34;UBERON:0002619!1.46e-54!22;UBERON:0003056!4.45e-53!61;UBERON:0001049!4.09e-52!57;UBERON:0005068!4.09e-52!57;UBERON:0006241!4.09e-52!57;UBERON:0007135!4.09e-52!57;UBERON:0001950!1.70e-51!20;UBERON:0002616!3.07e-50!59;UBERON:0000956!5.84e-48!25;UBERON:0000203!5.84e-48!25;UBERON:0000955!5.56e-46!69;UBERON:0006238!5.56e-46!69;UBERON:0001017!3.36e-38!82;UBERON:0003075!1.35e-36!86;UBERON:0007284!1.35e-36!86;UBERON:0005743!2.88e-36!86;UBERON:0007023!5.86e-35!115;UBERON:0002346!8.52e-35!90;UBERON:0000073!1.68e-32!94;UBERON:0001016!1.68e-32!94;UBERON:0000153!5.19e-30!129;UBERON:0007811!5.19e-30!129;UBERON:0000033!4.41e-29!123;UBERON:0002420!4.63e-27!9;UBERON:0007245!4.63e-27!9;UBERON:0010009!4.63e-27!9;UBERON:0010011!4.63e-27!9;UBERON:0000454!4.63e-27!9;UBERON:0009663!2.45e-24!7;UBERON:0001872!4.95e-22!5;UBERON:0002308!6.68e-19!9;UBERON:0000125!6.68e-19!9;UBERON:0004121!4.40e-18!169;UBERON:0000200!6.18e-18!6;UBERON:0000924!1.44e-17!173;UBERON:0006601!1.44e-17!173;UBERON:0000369!1.72e-16!4;UBERON:0002435!1.72e-16!4;UBERON:0000204!1.72e-16!4;UBERON:0010082!1.72e-16!4;UBERON:0001871!7.32e-14!7;UBERON:0000349!3.56e-13!5;UBERON:0000025!1.65e-12!194;UBERON:0002021!1.71e-12!5;UBERON:0000477!4.19e-11!286;UBERON:0000064!1.71e-10!219;UBERON:0005383!1.75e-10!3;UBERON:0005382!1.75e-10!3;UBERON:0004111!2.26e-10!241;UBERON:0002771!8.21e-10!3;UBERON:0001874!1.65e-08!1;UBERON:0001882!2.90e-08!1;UBERON:0005403!2.90e-08!1;UBERON:0001000!3.34e-08!1;UBERON:0005352!3.34e-08!1;UBERON:0002902!3.83e-08!1;UBERON:0009899!3.83e-08!1;UBERON:0002581!4.11e-08!1;UBERON:0000483!6.04e-08!309;UBERON:0007190!7.10e-08!1;UBERON:0003112!7.59e-08!1;UBERON:0000032!7.59e-08!1;UBERON:0005253!7.59e-08!1;UBERON:0003128!7.59e-08!1;UBERON:0002241!7.59e-08!1;UBERON:0001703!7.59e-08!1;UBERON:0004761!7.59e-08!1;UBERON:0009617!7.59e-08!1;UBERON:0000119!7.97e-08!312;UBERON:0002038!8.69e-08!1;UBERON:0009661!8.69e-08!1;UBERON:0002022!1.14e-07!1;UBERON:0000475!1.32e-07!365
|ontology_enrichment_uberon_v019=UBERON:0005383;6.24e-88;3!UBERON:0005382;6.24e-88;3!UBERON:0001874;1.23e-66;1!UBERON:0000369;2.40e-66;4!UBERON:0002435;2.40e-66;4!UBERON:0000204;2.40e-66;4!UBERON:0002420;3.75e-66;9!UBERON:0007245;3.75e-66;9!UBERON:0010009;3.75e-66;9!UBERON:0010011;3.75e-66;9!UBERON:0000454;3.75e-66;9!UBERON:0009663;1.49e-38;7!UBERON:0001873;5.04e-34;2!UBERON:0001876;7.05e-34;2!UBERON:0000125;2.66e-30;9!UBERON:0002308;2.66e-30;9!UBERON:0002791;1.08e-19;32!UBERON:0001869;1.61e-17;32!UBERON:0003528;1.94e-16;34!UBERON:0002020;1.94e-16;34!UBERON:0001893;1.94e-16;34!UBERON:0000349;1.83e-14;5!UBERON:0002780;1.31e-13;41!UBERON:0001890;1.31e-13;41!UBERON:0000073;5.59e-11;53!UBERON:0002616;5.59e-11;53!UBERON:0001871;9.89e-11;6!UBERON:0000955;9.13e-08;68!UBERON:0001017;4.09e-07;75
|ontology_enrichment_uberon_v019=UBERON:0005383;6.24e-88;3!UBERON:0005382;6.24e-88;3!UBERON:0001874;1.23e-66;1!UBERON:0000369;2.40e-66;4!UBERON:0002435;2.40e-66;4!UBERON:0000204;2.40e-66;4!UBERON:0002420;3.75e-66;9!UBERON:0007245;3.75e-66;9!UBERON:0010009;3.75e-66;9!UBERON:0010011;3.75e-66;9!UBERON:0000454;3.75e-66;9!UBERON:0009663;1.49e-38;7!UBERON:0001873;5.04e-34;2!UBERON:0001876;7.05e-34;2!UBERON:0000125;2.66e-30;9!UBERON:0002308;2.66e-30;9!UBERON:0002791;1.08e-19;32!UBERON:0001869;1.61e-17;32!UBERON:0003528;1.94e-16;34!UBERON:0002020;1.94e-16;34!UBERON:0001893;1.94e-16;34!UBERON:0000349;1.83e-14;5!UBERON:0002780;1.31e-13;41!UBERON:0001890;1.31e-13;41!UBERON:0000073;5.59e-11;53!UBERON:0002616;5.59e-11;53!UBERON:0001871;9.89e-11;6!UBERON:0000955;9.13e-08;68!UBERON:0001017;4.09e-07;75
|ontology_enrichment_uberon_v019_2=UBERON:0005383,6.24e-88,3;UBERON:0005382,6.24e-88,3;UBERON:0001874,1.23e-66,1;UBERON:0000369,2.40e-66,4;UBERON:0002435,2.40e-66,4;UBERON:0000204,2.40e-66,4;UBERON:0010082,2.40e-66,4;UBERON:0002420,3.75e-66,9;UBERON:0007245,3.75e-66,9;UBERON:0010009,3.75e-66,9;UBERON:0010011,3.75e-66,9;UBERON:0000454,3.75e-66,9;UBERON:0009663,1.49e-38,7;UBERON:0001873,5.04e-34,2;UBERON:0010122,5.04e-34,2;UBERON:0001876,7.05e-34,2;UBERON:0000125,2.66e-30,9;UBERON:0002308,2.66e-30,9;UBERON:0002791,5.33e-19,32;UBERON:0001869,5.33e-19,32;UBERON:0003528,5.55e-18,34;UBERON:0002020,5.55e-18,34;UBERON:0001893,5.55e-18,34;UBERON:0002780,3.52e-15,41;UBERON:0001890,3.52e-15,41;UBERON:0003080,3.52e-15,41;UBERON:0006240,3.52e-15,41;UBERON:0000349,1.83e-14,5;UBERON:0000073,4.68e-12,53;UBERON:0002616,4.68e-12,53;UBERON:0001049,1.77e-11,56;UBERON:0005068,1.77e-11,56;UBERON:0006241,1.77e-11,56;UBERON:0007135,1.77e-11,56;UBERON:0001871,9.89e-11,6;UBERON:0003056,1.22e-10,61;UBERON:0000955,1.53e-09,68;UBERON:0006238,1.53e-09,68;UBERON:0001017,3.31e-08,81;UBERON:0003075,3.31e-08,82;UBERON:0007284,3.31e-08,82;UBERON:0002346,7.10e-08,86;UBERON:0001016,1.68e-07,89
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288239906833923,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1253553312841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371072392647405,0,0,0,0,0,0,0,0,0,0,0,2.29133233388275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.937057782901357,0,0,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.759729551470544,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.273810757783986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.681017030557878,0,0,0,0,0,0.121499113316049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244052529803926,0.250381861413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.449604575675217,0,0.159633859057151,0.205116364240755,0,0.345786262321089,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202612753855184,0.781078098613847,0.206686796501184,0.443910671357348,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328863867814245,0,0,0,3.61365856806804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0.475940431336403,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.310298987585686,0,0,0.129177819672012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288239906833923,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1253553312841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371072392647405,0,0,0,0,0,0,0,0,0,0,0,2.29133233388275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.937057782901357,0,0,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.759729551470544,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.273810757783986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.681017030557878,0,0,0,0,0,0.121499113316049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244052529803926,0.250381861413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.449604575675217,0,0.159633859057151,0.205116364240755,0,0.345786262321089,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202612753855184,0.781078098613847,0.206686796501184,0.443910671357348,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328863867814245,0,0,0,3.61365856806804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0.475940431336403,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.310298987585686,0,0,0.129177819672012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|short_description=p8@SOWAHA
|short_description=p8@SOWAHA
}}
}}

Latest revision as of 06:14, 20 September 2015

Short description:p8@SOWAHA
Species:Human (Homo sapiens)
DPI dataset: Robust
TSS-like-by-RIKEN-classifier(Yes/No): Yes
DHS support(Yes/No): Yes
Description: CAGE_peak_8_at_SOWAHA_5end
Coexpression cluster:C35_caudate_putamen_diencephalon_nucleus_globus_thalamus_insula
Association with transcript: 48bp_to_ENST00000378693, NM_175873, uc003kxw.2_5end
EntrezGene:SOWAHA
HGNC: 27033
UniProt: Q2M3V2
Genome view:ZENBU


View on UCSC genome browser

Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression



0.0
0.5
1.0
1.5
2.0
2.5
3.0
3.5
4.0




  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FFCP_PHASE1:Hg19::chr5:132149081..132149086,%2B&oldid=4168226"