FFCP PHASE1:Hg19::chr10:99187568..99187591,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5223 | |EntrezGene=5223 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8888 | |HGNC=8888 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=134bp_to_uc010qov.1_5end | |association_with_transcript=134bp_to_uc010qov.1_5end | ||
|cluster_id=chr10:99187568..99187591,+ | |||
|description=CAGE_peak_4_at_PGAM1_5end | |description=CAGE_peak_4_at_PGAM1_5end | ||
|id=chr10:99187568..99187591,+ | |id=chr10:99187568..99187591,+ | ||
|ontology_enrichment_celltype=CL:0002321!5.45e-23!248;CL:0000220!6.63e-22!246;CL:0000066!4.91e-17!254;CL:0000055!2.72e-13!180;CL:0000222!8.08e-13!119;CL:0000548!1.55e-12!679;CL:0000004!1.55e-12!679;CL:0000255!1.55e-12!679;CL:0000012!4.49e-12!682;CL:0000144!1.94e-08!625;CL:0000077!3.96e-08!19;CL:0000359!6.80e-08!32;CL:1000449!1.49e-07!16;CL:1000497!2.53e-07!18;CL:0002518!2.53e-07!18;CL:0000003!3.23e-07!722;CL:0000192!3.40e-07!42;CL:0000514!3.40e-07!42;CL:1000507!6.68e-07!12;CL:1000494!6.68e-07!12;CL:0000183!7.71e-07!59;CL:0000393!8.67e-07!60;CL:0000211!8.67e-07!60 | |ontology_enrichment_celltype=CL:0002321!5.45e-23!248;CL:0000220!6.63e-22!246;CL:0000066!4.91e-17!254;CL:0000055!2.72e-13!180;CL:0000222!8.08e-13!119;CL:0000548!1.55e-12!679;CL:0000004!1.55e-12!679;CL:0000255!1.55e-12!679;CL:0000012!4.49e-12!682;CL:0000144!1.94e-08!625;CL:0000077!3.96e-08!19;CL:0000359!6.80e-08!32;CL:1000449!1.49e-07!16;CL:1000497!2.53e-07!18;CL:0002518!2.53e-07!18;CL:0000003!3.23e-07!722;CL:0000192!3.40e-07!42;CL:0000514!3.40e-07!42;CL:1000507!6.68e-07!12;CL:1000494!6.68e-07!12;CL:0000183!7.71e-07!59;CL:0000393!8.67e-07!60;CL:0000211!8.67e-07!60 | ||
|ontology_enrichment_celltype_v019=CL:0000077;1.88e-12;19!CL:0002322;1.01e-11;5!CL:0000359;6.90e-11;32!CL:0002539;1.39e-09;10!CL:1000507;3.94e-09;10!CL:1000494;3.94e-09;10!CL:0002166;2.12e-08;3!CL:1000497;5.20e-08;17!CL:0002518;5.20e-08;17!CL:0002621;7.67e-08;3!CL:0000192;2.09e-07;43!CL:1000449;2.16e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.17e-20,250;CL:0000222,6.33e-15,121;CL:0000077,1.03e-12,19;CL:0002322,1.48e-11,5;CL:0000359,2.88e-11,32;CL:0000066,3.11e-11,253;CL:0000192,1.08e-09,43;CL:0000514,1.08e-09,43;CL:0002539,1.09e-09,10;CL:1000507,1.76e-09,10;CL:1000494,1.76e-09,10;CL:0000393,9.99e-09,61;CL:0000211,9.99e-09,61;CL:0002166,2.14e-08,3;CL:1000497,3.93e-08,17;CL:0002518,3.93e-08,17;CL:0002621,5.91e-08,3;CL:0000213,8.73e-08,58;CL:0000215,8.73e-08,58;CL:1000449,1.39e-07,15;CL:0000680,4.99e-07,58;CL:0000056,4.99e-07,58;CL:0000355,4.99e-07,58 | |||
|ontology_enrichment_development_v019=CL:0000514;2.09e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!7.71e-11!143;UBERON:0006554!3.44e-09!44;UBERON:0002100!4.54e-09!216;UBERON:0003104!9.57e-09!238;UBERON:0009142!9.57e-09!238;UBERON:0001008!9.94e-09!45;UBERON:0000481!3.07e-08!347;UBERON:0000486!4.92e-08!82;UBERON:0003914!5.69e-08!118;UBERON:0003064!5.74e-08!37;UBERON:0003886!1.22e-07!63;UBERON:0004211!1.49e-07!16;UBERON:0001285!1.49e-07!16;UBERON:0007684!1.49e-07!16;UBERON:0003220!1.49e-07!16;UBERON:0004208!1.49e-07!16;UBERON:0000080!4.48e-07!18;UBERON:0002120!4.48e-07!18;UBERON:0004875!4.48e-07!18;UBERON:0005721!4.48e-07!18;UBERON:0005754!4.48e-07!18;UBERON:0007297!4.48e-07!18;UBERON:0009773!6.68e-07!12;UBERON:0001231!6.68e-07!12;UBERON:0004810!6.68e-07!12;UBERON:0000914!7.78e-07!83;UBERON:0002329!7.78e-07!83;UBERON:0003077!7.78e-07!83;UBERON:0003059!7.78e-07!83;UBERON:0007282!7.78e-07!83;UBERON:0009618!7.78e-07!83;UBERON:0007285!7.78e-07!83;UBERON:0006555!8.62e-07!17;UBERON:0005103!8.62e-07!17;UBERON:0000083!8.62e-07!17;UBERON:0009201!8.62e-07!17;UBERON:0004819!8.62e-07!17;UBERON:0006553!8.62e-07!17;UBERON:0003074!8.62e-07!17;UBERON:0003060!8.62e-07!17 | |||
|ontology_enrichment_uberon_v019=UBERON:0001135;6.58e-12;15!UBERON:0004237;1.39e-09;10!UBERON:0004695;1.39e-09;10!UBERON:0002111;1.39e-09;10!UBERON:0004178;1.39e-09;10!UBERON:0004211;3.94e-09;10!UBERON:0009773;3.94e-09;10!UBERON:0001231;3.94e-09;10!UBERON:0004810;3.94e-09;10!UBERON:0001949;7.67e-08;3!UBERON:0006555;2.16e-07;15!UBERON:0004819;2.16e-07;15!UBERON:0001285;2.16e-07;15!UBERON:0007684;2.16e-07;15!UBERON:0004573;3.67e-07;33!UBERON:0004571;3.67e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001135,6.27e-12,15;UBERON:0004237,1.09e-09,10;UBERON:0004695,1.09e-09,10;UBERON:0002111,1.09e-09,10;UBERON:0004178,1.09e-09,10;UBERON:0004810,1.76e-09,10;UBERON:0000486,4.68e-09,83;UBERON:0004573,5.88e-08,33;UBERON:0004571,5.88e-08,33;UBERON:0001949,5.91e-08,3;UBERON:0001637,1.02e-07,42;UBERON:0003509,1.02e-07,42;UBERON:0004572,1.02e-07,42;UBERON:0004211,1.39e-07,15;UBERON:0009773,1.39e-07,15;UBERON:0001231,1.39e-07,15;UBERON:0001285,1.39e-07,15;UBERON:0007684,1.39e-07,15;UBERON:0004208,1.39e-07,15;UBERON:0007503,4.83e-07,78;UBERON:0006555,5.06e-07,16;UBERON:0004819,5.06e-07,16;UBERON:0002385,7.43e-07,64;UBERON:0001015,7.43e-07,64;UBERON:0000383,7.43e-07,64 | |||
|phase1_expression=0.363356758541113,0,0.281908808191942,1.0007329835313,0,0,0,0,0.261185628199839,0.245733936501509,0.697801167972428,0.218441372130172,0,0.247532705920093,0.331397375727916,2.01697543935533,1.20538905604795,2.19093027116212,1.95173119516203,0.861847406537515,0.612002073732759,0.313454721478088,0,0.684372125364421,0.125542639594803,0,0.164201178899891,0,0,0,0,0,1.204823675113,1.47901604066715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0.722878304769133,0.50133791063589,1.15877215168659,1.5905718941022,0.486634870302636,0.567208902984407,0.221729397462564,0.351339142772504,0,0,0,0,0,0,0,0,0,0.39752481473341,0,0.347140501607594,0,0,0,0.626984899610432,0.258416759169329,0.35576626268671,0,2.01414658554573,2.28081631715554,0.976248230192678,0.367663080345869,0,0,0,0.112611480483322,0,0,0,0,0,0.436094052142534,0,0.12663051166458,0.529636723252875,0,0,0.560677600142307,2.1349799145941,0.74000264525148,0,0,0.490385709340376,0,0,0.234321431833797,0.312160076830321,0.570471821544449,0,0.117434498643765,0,0.280901613404497,0.61246251376468,0.122834317311768,0,2.37600571456411,0.494533858557114,0,0.718618141816238,0,0,0.277064115484183,0.438977620880838,0.30648779579902,0.150238058906597,0.340296549480063,0.358779271377724,0.427114777637135,0.211931901159562,0,0.206105058476878,0.257640540045629,1.30281799432113,0.506328996723799,0.68205903612839,0.252433774244115,0.276149695926898,0.80823028409406,0,0.806016785821122,0.339121184620975,3.28543450377605,3.54569956768085,2.86804595389004,3.17131635936948,3.04818467139416,2.09149097165133,2.17688215532278,2.27088765788066,0.72995471815166,0,0,1.38134921352481,0,0.721879481669586,0.236613600079688,0,0.482022059766964,0.330881918197182,0.435758888184812,0.237270619111097,0.539325232640658,0.784885860501384,0.769494313892781,0,0,0.8231480226628,0,0,0,0,0,0.860919069801795,0.514703430895577,2.41450627898976,0,0.100528972411631,0,0.651616610620649,0,0,0.115930404975077,0.352226082707465,3.03169540298255,1.85194205030644,0.951270761172991,0,0,0,0,0,6.56136837907439,7.39121364074982,5.81277898693785,0.0895585227028483,0,0,0,0,0,0,0,0,0.381988425558278,0,0,0.102827492703324,0.600686115687835,0,0.112131084345361,0,0.22001485746285,1.29271715757778,0,0,0.531876233169741,0,0,0,0,0,0,0,0.325736184293735,0,0,2.41151501647669,8.71533458600294,4.69873058555668,0,0,0,0,0,0,1.30303176000821,0,0.358121926479791,0,0,0,0,0.254094624222463,0,0,0.335032530668698,0,0,0,0,0,0,0,0.207970861530807,0.356857977594324,0.157702415033935,0,0,0,0,0,0,0.173767228936166,0.391602314925481,0,0,0,0,0,0,0,1.48864684691266,0,0.561320188866147,0.256278298511402,0,0.321707842287215,0,0.154209693802656,0.532685175939381,0.492762936082855,1.03850885836724,0.464841513839837,1.32945394550784,4.0101294060657,0.368323955743585,0.34444334449382,0.364182336013434,0.262248829918848,1.35359883872224,1.61732207919271,0.784349769176855,1.46139224653261,2.74434235121477,1.13733384070897,0.510281115829547,0.863663664408557,0,1.89662506280697,2.00675909541941,0.509752546090077,0.831076008928724,1.56712328305525,0,0,0.256450125116389,0.328014645699706,0,0,0,0,0.574265537996172,0.650060246036521,0,0,0,0.15350367472613,0,0.214840489736547,0.145016693914229,0.170453254832202,0.178064071293475,1.4875642382488,0,0.127612712494584,0.2023155617111,0.464845549297286,0,2.0911118104818,1.54016790088044,2.66153015158511,0,1.11194531462352,0.286249773483982,0,0,0.571890581771475,0,0,0.318203247925937,2.35484592059769,1.07923474549989,0.54907405947211,1.06031162111118,0.808729926293264,1.58510321173008,1.26377536871694,0,3.89941583410055,0,0.136499911407986,0.424216295861138,0,0,0.66343897524122,2.63070531152258,0,0,2.23201414658974,0,0.281695602532241,0.286822704408103,0.196498082026242,1.07001315444375,0,1.05553817648832,1.31717957183961,0,0.349934720244983,0.673554789078584,2.01090682660736,2.17781969722645,0,3.87454835404107,0,0.443430153536676,0.689170200620878,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.333698283423817,0,0,0,0,0,0,0,0,0.121360521749513,0,0,0,0.296964680832639,0,0,0,0.222617410045812,0.16480387422676,0.211125408127993,0,0,0,0,0.123084805461069,0.311039587661807,0,0.537063524026827,0,0.0986434056369336,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0.10893846351899,0.557694977114413,0.230850775511391,0.113942055847001,0.46112780877612,0.0897576444097721,0.108647371922008,0.31900115973192,1.00757352742049,0,0,0,0,0,0,0,0,0,1.47698645169619,0.163232808159148,0.848118428603645,0,0,0.0884575645033392,0,0.296521128680622,0.123563938946503,0.208843899010911,0,0.802577647298789,0,0,0.19566461893209,0,0,0,0,0,3.45743864653333,0,0,0,0,0,0,0.138674673013139,0,0.391969589657511,0,0,0,0.19351266257817,0,0.246346371159628,0,0,0,0,0,0,0.782205530939212,0,0.213452994739353,1.39866726707491,0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| ||
|short_description=p4@PGAM1 | |short_description=p4@PGAM1 | ||
}} | }} |
Latest revision as of 06:30, 20 September 2015
Short description: | p4@PGAM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_PGAM1_5end |
Coexpression cluster: | NA |
Association with transcript: | 134bp_to_uc010qov.1_5end |
EntrezGene: | PGAM1 |
HGNC: | 8888 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.17e-20 | 250 |
mesodermal cell | 6.33e-15 | 121 |
mesothelial cell | 1.03e-12 | 19 |
embryonic stem cell | 1.48e-11 | 5 |
vascular associated smooth muscle cell | 2.88e-11 | 32 |
epithelial cell | 3.11e-11 | 253 |
smooth muscle cell | 1.08e-09 | 43 |
smooth muscle myoblast | 1.08e-09 | 43 |
aortic smooth muscle cell | 1.09e-09 | 10 |
kidney tubule cell | 1.76e-09 | 10 |
nephron tubule epithelial cell | 1.76e-09 | 10 |
electrically responsive cell | 9.99e-09 | 61 |
electrically active cell | 9.99e-09 | 61 |
epithelial cell of Malassez | 2.14e-08 | 3 |
kidney cell | 3.93e-08 | 17 |
kidney epithelial cell | 3.93e-08 | 17 |
gingival epithelial cell | 5.91e-08 | 3 |
lining cell | 8.73e-08 | 58 |
barrier cell | 8.73e-08 | 58 |
epithelial cell of nephron | 1.39e-07 | 15 |
muscle precursor cell | 4.99e-07 | 58 |
myoblast | 4.99e-07 | 58 |
multi-potent skeletal muscle stem cell | 4.99e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
smooth muscle tissue | 6.27e-12 | 15 |
blood vessel smooth muscle | 1.09e-09 | 10 |
arterial system smooth muscle | 1.09e-09 | 10 |
artery smooth muscle tissue | 1.09e-09 | 10 |
aorta smooth muscle tissue | 1.09e-09 | 10 |
nephron tubule epithelium | 1.76e-09 | 10 |
multilaminar epithelium | 4.68e-09 | 83 |
systemic artery | 5.88e-08 | 33 |
systemic arterial system | 5.88e-08 | 33 |
gingival epithelium | 5.91e-08 | 3 |
artery | 1.02e-07 | 42 |
arterial blood vessel | 1.02e-07 | 42 |
arterial system | 1.02e-07 | 42 |
nephron epithelium | 1.39e-07 | 15 |
renal tubule | 1.39e-07 | 15 |
nephron tubule | 1.39e-07 | 15 |
nephron | 1.39e-07 | 15 |
uriniferous tubule | 1.39e-07 | 15 |
nephrogenic mesenchyme | 1.39e-07 | 15 |
epithelial vesicle | 4.83e-07 | 78 |
excretory tube | 5.06e-07 | 16 |
kidney epithelium | 5.06e-07 | 16 |
muscle tissue | 7.43e-07 | 64 |
musculature | 7.43e-07 | 64 |
musculature of body | 7.43e-07 | 64 |